Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G07490 Arabidopsis thaliana HOM05D008503 ORTHO05D001075 1.4e-30 136.3 108 100.0
Carub.0001s0681 Capsella rubella HOM05D008503 ORTHO05D001075 2.1e-23 112.5 111 91.0
A09p66390 Brassica napus HOM05D008503 ORTHO05D001075 3.6e-23 111.7 108 75.0
BraA09t41975Z Brassica rapa HOM05D008503 ORTHO05D001075 3.6e-23 111.7 108 75.0
A08p35630 Brassica napus HOM05D008503 ORTHO05D001075 1.0e-17 93.6 110 81.8
C08p03100 Brassica napus HOM05D008503 ORTHO05D001075 1.0e-17 93.6 110 81.8
BraA08t35469Z Brassica rapa HOM05D008503 ORTHO05D001075 1.0e-17 93.6 110 81.8
AT2G29125 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 3.8e-17 91.7 117 70.1
THA.LOC104826316 Tarenaya hassleriana HOM05D008503 ORTHO05D001075 8.5e-17 90.5 112 65.2
AL4G23680 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 1.1e-16 90.1 117 69.2
BcaB06g28285 Brassica carinata HOM05D001415 ORTHO05D001075 2.5e-16 89.0 114 56.1
BcaB06g28286 Brassica carinata HOM05D001415 ORTHO05D001075 2.5e-16 89.0 114 56.1
A04p22250 Brassica napus HOM05D008503 ORTHO05D001075 3.2e-16 88.6 114 54.4
BraA04t17777Z Brassica rapa HOM05D008503 ORTHO05D001075 3.2e-16 88.6 114 54.4
BcaC02g08109 Brassica carinata HOM05D001415 ORTHO05D001075 9.4e-16 87.0 114 64.0
BcaC07g42471 Brassica carinata HOM05D008503 ORTHO05D001075 1.6e-15 86.3 111 71.2
Carub.0004s1014 Capsella rubella HOM05D008503 ORTHO05D001075 2.1e-15 85.9 115 64.3
Thhalv10017949m.g Eutrema salsugineum HOM05D001415 ORTHO05D001075 2.1e-15 85.9 119 54.6
Sp4g11940 Schrenkiella parvula HOM05D008503 ORTHO05D001075 2.1e-15 85.9 119 65.5
Thhalv10009168m.g Eutrema salsugineum HOM05D008503 ORTHO05D001075 1.0e-14 83.6 108 73.1
BcaC07g41995 Brassica carinata HOM05D001415 ORTHO05D001075 1.5e-13 79.7 110 67.3
C08p50550 Brassica napus HOM05D001415 ORTHO05D001075 1.5e-13 79.7 110 67.3
BolC8t52582H Brassica oleracea HOM05D001415 ORTHO05D001075 1.5e-13 79.7 110 67.3
Sp1g06220 Schrenkiella parvula HOM05D008503 ORTHO05D001075 2.0e-13 79.3 36 100.0
CARHR007270 Cardamine hirsuta HOM05D008503 ORTHO05D001075 4.4e-13 78.2 98 54.1
Duzib170G0931 Durio zibethinus HOM05D001415 ORTHO05D001075 5.7e-13 77.8 105 57.1
THA.LOC104800681 Tarenaya hassleriana HOM05D008503 ORTHO05D001075 4.8e-12 74.7 106 67.9
Duzib168G2106 Durio zibethinus HOM05D001415 ORTHO05D001075 6.3e-12 74.3 108 50.9
A10p06020 Brassica napus HOM05D001415 ORTHO05D001075 8.2e-12 73.9 33 100.0
BraA10t42864Z Brassica rapa HOM05D001415 ORTHO05D001075 8.2e-12 73.9 33 100.0
Gohir.A05G093900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 8.2e-12 73.9 108 54.6
Gohir.D05G094400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 8.2e-12 73.9 108 54.6
Gorai.009G097500 Gossypium raimondii HOM05D001415 ORTHO05D001075 8.2e-12 73.9 108 54.6
Ciclev10030229m.g Citrus clementina HOM05D001415 ORTHO05D001075 1.1e-11 73.6 112 53.6
THA.LOC104815782 Tarenaya hassleriana HOM05D008503 ORTHO05D001075 1.1e-11 73.6 100 49.0
Cpa.g.sc81.113 Carica papaya HOM05D001415 ORTHO05D001075 1.4e-11 73.2 112 58.0
CARHR122420 Cardamine hirsuta HOM05D008503 ORTHO05D001075 3.1e-11 72.0 114 67.5
Sed0008013 Sechium edule HOM05D001415 ORTHO05D001075 3.1e-11 72.0 105 42.9
Duzib150G0909 Durio zibethinus HOM05D001415 ORTHO05D001075 4.1e-11 71.6 107 52.3
MELO3C020615.2 Cucumis melo HOM05D001415 ORTHO05D001075 7.0e-11 70.9 108 54.6
Eucgr.B02318 Eucalyptus grandis HOM05D008503 ORTHO05D001075 1.2e-10 70.1 34 85.3
Atru.chr3.3969 Acer truncatum HOM05D001415 ORTHO05D001075 1.6e-10 69.7 110 50.0
Thecc.09G317800 Theobroma cacao HOM05D001415 ORTHO05D001075 1.6e-10 69.7 105 49.5
ClCG03G001360 Citrullus lanatus HOM05D001415 ORTHO05D001075 2.0e-10 69.3 38 81.6
CsaV3_1G034460 Cucumis sativus L. HOM05D001415 ORTHO05D001075 2.0e-10 69.3 38 81.6
Glyma.12G061000 Glycine max HOM05D008503 ORTHO05D001075 2.6e-10 68.9 105 48.6
PGR102G0519 Punica granatum HOM05D001415 ORTHO05D001075 3.5e-10 68.6 33 84.8
RcHm_v2.0_Chr5g0065921 Rosa chinensis HOM05D001415 ORTHO05D001075 3.5e-10 68.6 125 46.4
Manes.01G170700 Manihot esculenta HOM05D001415 ORTHO05D001075 4.5e-10 68.2 105 50.5
Manes.02G130200 Manihot esculenta HOM05D001415 ORTHO05D001075 4.5e-10 68.2 105 45.7
Lj3g0014912 Lotus japonicus HOM05D001415 ORTHO05D001075 5.9e-10 67.8 123 38.2
Cfa011527 Carpinus fangiana HOM05D001415 ORTHO05D001075 7.7e-10 67.4 38 78.9
TWI79G1693 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 7.7e-10 67.4 105 43.8
Potri.001G242800 Populus trichocarpa HOM05D001415 ORTHO05D001075 1.7e-09 66.2 116 49.1
Sed0023003 Sechium edule HOM05D001415 ORTHO05D001075 1.7e-09 66.2 107 69.2
TWI31G0218 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 1.7e-09 66.2 61 57.4
AT5G59510 Arabidopsis thaliana HOM05D008503 ORTHO05D001075 2.9e-09 65.5 61 52.5
Haze_24132 Corylus avellana HOM05D001415 ORTHO05D001075 2.9e-09 65.5 33 87.9
Potri.009G034300 Populus trichocarpa HOM05D001415 ORTHO05D001075 2.9e-09 65.5 33 87.9
FvH4_3g04210 Fragaria vesca HOM05D008503 ORTHO05D001075 3.8e-09 65.1 39 74.4
Sed0002507 Sechium edule HOM05D001415 ORTHO05D001075 3.8e-09 65.1 37 81.1
Lalb_Chr19g0137921 Lupinus albus HOM05D001415 ORTHO05D001075 5.0e-09 64.7 109 48.6
COL.COLO4_18559 Corchorus olitorius HOM05D001415 ORTHO05D001075 8.5e-09 63.9 109 48.6
MELO3C025900.2 Cucumis melo HOM05D001415 ORTHO05D001075 8.5e-09 63.9 33 87.9
Sp6g21220 Schrenkiella parvula HOM05D008503 ORTHO05D001075 8.5e-09 63.9 60 46.7
Medtr2g097570 Medicago truncatula HOM05D001415 ORTHO05D001075 1.1e-08 63.5 38 73.7
Gohir.A13G227216 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.5e-08 63.2 37 73.0
Gohir.D13G232500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.5e-08 63.2 37 73.0
Gorai.013G263300 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.5e-08 63.2 37 73.0
CANSAT54G2158 Cannabis sativa HOM05D001415 ORTHO05D001075 1.9e-08 62.8 32 87.5
Carub.0008s2019 Capsella rubella HOM05D008503 ORTHO05D001075 1.9e-08 62.8 59 47.5
CiPaw.13G091000 Carya illinoinensis HOM05D001415 ORTHO05D001075 1.9e-08 62.8 33 84.8
CiPaw.14G067100 Carya illinoinensis HOM05D001415 ORTHO05D001075 1.9e-08 62.8 33 84.8
TPR.G23565 Trifolium pratense HOM05D001415 ORTHO05D001075 2.5e-08 62.4 105 39.0
TPR.G5599 Trifolium pratense HOM05D001415 ORTHO05D001075 3.2e-08 62.0 33 81.8
Medtr4g064520 Medicago truncatula HOM05D001415 ORTHO05D001075 4.2e-08 61.6 105 45.7
Glyma.18G076400 Glycine max HOM05D001415 ORTHO05D001075 5.5e-08 61.2 33 81.8
Phvul.011G062700 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 5.5e-08 61.2 33 81.8
arahy.Tifrunner.gnm1.ann1.K7ANH9 Arachis hypogaea HOM05D001415 ORTHO05D001075 7.2e-08 60.8 33 78.8
BcaC09g49758 Brassica carinata HOM05D008503 ORTHO05D001075 7.2e-08 60.8 60 50.0
ClCG02G019980 Citrullus lanatus HOM05D001415 ORTHO05D001075 9.4e-08 60.5 27 96.3
BcaB08g36251 Brassica carinata HOM05D008503 ORTHO05D001075 1.2e-07 60.1 59 47.5
BcaC02g12100 Brassica carinata HOM05D001415 ORTHO05D001075 1.2e-07 60.1 107 35.5
A05p06700 Brassica napus HOM05D001415 ORTHO05D001075 1.2e-07 60.1 107 35.5
C04p07830 Brassica napus HOM05D001415 ORTHO05D001075 1.2e-07 60.1 107 35.5
BolC4t22402H Brassica oleracea HOM05D001415 ORTHO05D001075 1.2e-07 60.1 107 35.5
BraA05t19637Z Brassica rapa HOM05D001415 ORTHO05D001075 1.2e-07 60.1 107 35.5
Prupe.6G072200 Prunus persica HOM05D001415 ORTHO05D001075 1.2e-07 60.1 119 37.0
AT3G46613 Arabidopsis thaliana HOM05D008503 ORTHO05D001075 1.6e-07 59.7 60 48.3
BcaC03g14006 Brassica carinata HOM05D008503 ORTHO05D001075 1.6e-07 59.7 59 47.5
C02p12440 Brassica napus HOM05D008503 ORTHO05D001075 1.6e-07 59.7 59 47.5
BolC2t07344H Brassica oleracea HOM05D008503 ORTHO05D001075 1.6e-07 59.7 59 47.5
CARHR285880 Cardamine hirsuta HOM05D008503 ORTHO05D001075 1.6e-07 59.7 59 45.8
ClCG07G003480 Citrullus lanatus HOM05D001415 ORTHO05D001075 1.6e-07 59.7 106 34.0
Thhalv10014947m.g Eutrema salsugineum HOM05D008503 ORTHO05D001075 1.6e-07 59.7 59 49.2
arahy.Tifrunner.gnm1.ann1.Z87QWF Arachis hypogaea HOM05D008503 ORTHO05D001075 2.1e-07 59.3 33 75.8
BcaC04g19763 Brassica carinata HOM05D008503 ORTHO05D001075 2.1e-07 59.3 60 45.0
A10p16720 Brassica napus HOM05D008503 ORTHO05D001075 2.1e-07 59.3 60 45.0
C09p51910 Brassica napus HOM05D008503 ORTHO05D001075 2.1e-07 59.3 60 45.0
BolC9t58054H Brassica oleracea HOM05D008503 ORTHO05D001075 2.1e-07 59.3 60 45.0
BraA10t43753Z Brassica rapa HOM05D008503 ORTHO05D001075 2.1e-07 59.3 60 45.0
BraA02t05789Z Brassica rapa HOM05D008503 ORTHO05D001075 2.7e-07 58.9 59 47.5
BcaB02g09096 Brassica carinata HOM05D001415 ORTHO05D001075 3.6e-07 58.5 107 34.6
C01p33250 Brassica napus HOM05D008503 ORTHO05D001075 3.6e-07 58.5 60 48.3
MD03G1087500 Malus domestica HOM05D001415 ORTHO05D001075 3.6e-07 58.5 115 45.2
Oeu053887.1 Olea europaea HOM05D001415 ORTHO05D001075 3.6e-07 58.5 108 42.6
Lalb_Chr01g0003531 Lupinus albus HOM05D008503 ORTHO05D001075 4.7e-07 58.2 32 75.0
Lalb_Chr03g0026501 Lupinus albus HOM05D001415 ORTHO05D001075 4.7e-07 58.2 118 44.9
PGR119G1246 Punica granatum HOM05D008503 ORTHO05D001075 4.7e-07 58.2 32 71.9
Aqoxy2G02269 Aquilegia oxysepala HOM05D001415 ORTHO05D001075 6.1e-07 57.8 105 35.2
BcaB05g22516 Brassica carinata HOM05D008503 ORTHO05D001075 6.1e-07 57.8 59 45.8
BcaB05g23545 Brassica carinata HOM05D008503 ORTHO05D001075 6.1e-07 57.8 60 46.7
MELO3C023874.2 Cucumis melo HOM05D001415 ORTHO05D001075 6.1e-07 57.8 106 33.0
Glyma.13G338000 Glycine max HOM05D001415 ORTHO05D001075 6.1e-07 57.8 27 88.9
Glyma.15G036400 Glycine max HOM05D001415 ORTHO05D001075 6.1e-07 57.8 27 88.9
Carub.0004s2175 Capsella rubella HOM05D001415 ORTHO05D001075 8.0e-07 57.4 107 34.6
Lj3g0013501 Lotus japonicus HOM05D008503 ORTHO05D001075 1.0e-06 57.0 31 80.6
AL4G37150 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 1.4e-06 56.6 107 34.6
AT2G39705 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 1.4e-06 56.6 107 34.6
A02p07090 Brassica napus HOM05D008503 ORTHO05D001075 1.4e-06 56.6 59 45.8
Phvul.L007243 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 1.4e-06 56.6 26 88.5
Sp4g21960 Schrenkiella parvula HOM05D001415 ORTHO05D001075 1.4e-06 56.6 107 32.7
Sed0019804 Sechium edule HOM05D001415 ORTHO05D001075 1.4e-06 56.6 33 69.7
CARHR134540 Cardamine hirsuta HOM05D001415 ORTHO05D001075 1.8e-06 56.2 107 34.6
Ciclev10033183m.g Citrus clementina HOM05D001415 ORTHO05D001075 3.0e-06 55.5 106 37.7
Thhalv10017695m.g Eutrema salsugineum HOM05D001415 ORTHO05D001075 3.0e-06 55.5 107 32.7
Hma1.2p1_0757F.1_g213305 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 3.0e-06 55.5 31 71.0
Hma1.2p1_0757F.1_g213310 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 3.0e-06 55.5 31 71.0
MBI05_g29691_MAGBIO Magnolia biondii HOM05D001415 ORTHO05D001075 3.0e-06 55.5 113 39.8
HanXRQChr01g0010481 Helianthus annuus HOM05D001415 ORTHO05D001075 4.0e-06 55.1 121 33.1
Lsat_1_v5_gn_5_169241 Lactuca sativa HOM05D001415 ORTHO05D001075 4.0e-06 55.1 33 69.7
Cc02_g07600 Coffea canephora HOM05D001415 ORTHO05D001075 5.2e-06 54.7 104 32.7
CARHR155200 Cardamine hirsuta HOM05D008503 ORTHO05D001075 6.7e-06 54.3 37 64.9
HanXRQChr07g0201511 Helianthus annuus HOM05D001415 ORTHO05D001075 6.7e-06 54.3 106 30.2
Oeu045612.1 Olea europaea HOM05D001415 ORTHO05D001075 6.7e-06 54.3 108 35.2
Rhsim01G0230800 Rhododendron simsii HOM05D001415 ORTHO05D001075 6.7e-06 54.3 57 43.9
ClCG09G019600 Citrullus lanatus HOM05D001415 ORTHO05D001075 8.8e-06 53.9 104 31.7


User provided reference genes

Program Settings