Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G07210 Arabidopsis thaliana HOM05D005913 ORTHO05D007138 9.2e-142 506.9 262 100.0
AL1G17350 Arabidopsis lyrata HOM05D005913 ORTHO05D007138 2.1e-133 479.2 262 94.7
Carub.0001s0651 Capsella rubella HOM05D005913 ORTHO05D007138 1.2e-120 436.8 262 87.0
CARHR006930 Cardamine hirsuta HOM05D005913 ORTHO05D007138 1.9e-102 376.3 268 77.2
Thhalv10008508m.g Eutrema salsugineum HOM05D005913 ORTHO05D007138 8.7e-100 367.5 263 76.4
Sp1g05970 Schrenkiella parvula HOM05D005913 ORTHO05D007138 1.0e-95 354.0 263 74.1
A10p05770 Brassica napus HOM05D005913 ORTHO05D007138 1.2e-85 320.5 278 68.0
BraA10t42838Z Brassica rapa HOM05D005913 ORTHO05D007138 1.2e-85 320.5 278 68.0
C05p05290 Brassica napus HOM05D005913 ORTHO05D007138 1.4e-84 317.0 263 71.1
BolC5t29300H Brassica oleracea HOM05D005913 ORTHO05D007138 3.0e-84 315.8 263 70.7
BolC8t52604H Brassica oleracea HOM05D005913 ORTHO05D007138 2.2e-82 309.7 263 68.8
BraA09t41996Z Brassica rapa HOM05D005913 ORTHO05D007138 1.7e-79 300.1 262 67.2
C08p50760 Brassica napus HOM05D005913 ORTHO05D007138 2.2e-79 299.7 291 62.5
BcaC07g42020 Brassica carinata HOM05D005913 ORTHO05D007138 8.5e-79 297.7 291 62.2
A09p66580 Brassica napus HOM05D005913 ORTHO05D007138 1.9e-78 296.6 262 66.0
Aa31LG1G6450 Aethionema arabicum HOM05D005913 ORTHO05D007138 5.2e-68 261.9 275 57.8
BcaC07g42452 Brassica carinata HOM05D005913 ORTHO05D007138 1.1e-65 254.2 261 57.9
Cpa.g.sc112.8 Carica papaya HOM05D005913 ORTHO05D007138 8.3e-50 201.4 276 49.6
QL05p072708 Quercus lobata HOM05D005913 ORTHO05D007138 3.2e-49 199.5 262 50.0
Peaxi162Scf00228g00514 Petunia axillaris HOM05D000044 ORTHO05D007138 3.5e-48 196.1 236 53.0
Nitab4.5_0000037g0040 Nicotiana tabacum HOM05D005913 ORTHO05D007138 1.3e-47 194.1 228 54.4
CiPaw.13G076700 Carya illinoinensis HOM05D005913 ORTHO05D007138 2.3e-47 193.4 273 49.1
BcaB07g33371 Brassica carinata HOM05D005913 ORTHO05D007138 5.0e-47 192.2 163 65.0
Sopen10g034140 Solanum pennellii HOM05D005913 ORTHO05D007138 3.3e-46 189.5 236 52.1
Prupe.6G056500 Prunus persica HOM05D005913 ORTHO05D007138 5.6e-46 188.7 267 47.2
TWI31G0765 Tripterygium wilfordii HOM05D005913 ORTHO05D007138 5.6e-46 188.7 276 46.7
GSVIVG01024730001 Vitis vinifera HOM05D005913 ORTHO05D007138 7.3e-46 188.3 268 49.3
Solyc10g084700.2 Solanum lycopersicum HOM05D005913 ORTHO05D007138 1.2e-45 187.6 236 51.7
CAN.G324.3 Capsicum annuum HOM05D005913 ORTHO05D007138 1.6e-45 187.2 238 50.8
Hma1.2p1_1287F.1_g273300 Hydrangea macrophylla HOM05D005913 ORTHO05D007138 2.1e-45 186.8 283 48.1
PGSC0003DMG402011001 Solanum tuberosum HOM05D005913 ORTHO05D007138 3.6e-45 186.0 236 51.7
PGSC0003DMG400016288 Solanum tuberosum HOM05D005913 ORTHO05D007138 4.7e-45 185.7 236 51.3
Cfa011705 Carpinus fangiana HOM05D005913 ORTHO05D007138 1.8e-44 183.7 270 48.1
Duzib150G0854 Durio zibethinus HOM05D005913 ORTHO05D007138 3.1e-44 183.0 273 48.4
CSS0022052 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 4.0e-44 182.6 242 49.2
CSS0006724 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 5.2e-44 182.2 275 46.5
RcHm_v2.0_Chr5g0069871 Rosa chinensis HOM05D005913 ORTHO05D007138 6.8e-44 181.8 263 46.4
Oeu008301.1 Olea europaea HOM05D005913 ORTHO05D007138 1.5e-43 180.6 270 45.9
FAN25G2063 Fragaria x ananassa HOM05D005913 ORTHO05D007138 2.0e-43 180.3 265 49.4
FAN11G0587 Fragaria x ananassa HOM05D005913 ORTHO05D007138 7.5e-43 178.3 268 48.9
Eucgr.J01039 Eucalyptus grandis HOM05D005913 ORTHO05D007138 9.8e-43 177.9 263 45.2
BcaC07g42451 Brassica carinata HOM05D005913 ORTHO05D007138 1.7e-42 177.2 109 83.5
FvH4_3g38720 Fragaria vesca HOM05D005913 ORTHO05D007138 1.7e-42 177.2 267 48.3
TAR633G1775 Trochodendron aralioides HOM05D005913 ORTHO05D007138 1.7e-42 177.2 265 45.7
CANSAT56G2716 Cannabis sativa HOM05D005913 ORTHO05D007138 2.9e-42 176.4 255 47.8
FAN21G0630 Fragaria x ananassa HOM05D005913 ORTHO05D007138 3.7e-42 176.0 268 48.5
Gohir.D13G228900 Gossypium hirsutum HOM05D005913 ORTHO05D007138 4.9e-42 175.6 268 46.3
Sc21g0006380 Simmondsia chinensis HOM05D005913 ORTHO05D007138 4.9e-42 175.6 266 47.7
Sc21g0006400 Simmondsia chinensis HOM05D005913 ORTHO05D007138 6.4e-42 175.3 266 47.7
Ciclev10029073m.g Citrus clementina HOM05D005913 ORTHO05D007138 8.3e-42 174.9 271 45.4
Nn2g15825 Nelumbo nucifera HOM05D005913 ORTHO05D007138 1.1e-41 174.5 264 47.3
Thecc.09G300200 Theobroma cacao HOM05D005913 ORTHO05D007138 1.4e-41 174.1 275 46.9
DCAR_002129 Daucus carota HOM05D005913 ORTHO05D007138 1.9e-41 173.7 271 45.4
Gorai.013G259900 Gossypium raimondii HOM05D005913 ORTHO05D007138 4.1e-41 172.6 268 45.9
vmacro14595 Vaccinium macrocarpon HOM05D005913 ORTHO05D007138 4.1e-41 172.6 247 48.2
Rhsim01G0236700 Rhododendron simsii HOM05D005913 ORTHO05D007138 5.4e-41 172.2 267 46.1
CsaV3_6G016190 Cucumis sativus L. HOM05D005913 ORTHO05D007138 7.0e-41 171.8 254 47.2
HanXRQChr16g0518331 Helianthus annuus HOM05D005913 ORTHO05D007138 7.0e-41 171.8 236 47.5
Cc01_g14290 Coffea canephora HOM05D005913 ORTHO05D007138 1.2e-40 171.0 203 52.2
Dinv28648 Davidia involucrata HOM05D005913 ORTHO05D007138 1.2e-40 171.0 278 44.2
FAN16G2194 Fragaria x ananassa HOM05D005913 ORTHO05D007138 1.2e-40 171.0 265 47.2
Lsat_1_v5_gn_9_20000 Lactuca sativa HOM05D005913 ORTHO05D007138 1.2e-40 171.0 240 47.5
MD11G1073200 Malus domestica HOM05D005913 ORTHO05D007138 1.6e-40 170.6 271 46.5
Lj3A585T46 Lonicera japonica HOM05D005913 ORTHO05D007138 2.7e-40 169.9 229 48.0
Sed0020527 Sechium edule HOM05D005913 ORTHO05D007138 3.5e-40 169.5 277 44.4
Hund09257 Selenicereus undatus HOM05D005913 ORTHO05D007138 4.6e-40 169.1 233 47.2
PGR044G1475 Punica granatum HOM05D005913 ORTHO05D007138 7.8e-40 168.3 242 49.2
Gohir.A13G224200 Gossypium hirsutum HOM05D005913 ORTHO05D007138 1.0e-39 167.9 263 46.4
DCAR_012499 Daucus carota HOM05D005913 ORTHO05D007138 1.7e-39 167.2 232 47.8
MSTRG.24154 Avicennia marina HOM05D005913 ORTHO05D007138 3.0e-39 166.4 261 46.0
ATR0681G105 Amborella trichopoda HOM05D005913 ORTHO05D007138 5.0e-39 165.6 263 43.3
Dinv25093 Davidia involucrata HOM05D005913 ORTHO05D007138 8.6e-39 164.9 242 47.5
Manes.10G106300 Manihot esculenta HOM05D005913 ORTHO05D007138 1.5e-38 164.1 298 41.9
AUR62020144 Chenopodium quinoa HOM05D005913 ORTHO05D007138 2.5e-38 163.3 267 43.4
Potri.006G170500 Populus trichocarpa HOM05D005913 ORTHO05D007138 4.3e-38 162.5 244 48.0
Haze_24336 Corylus avellana HOM05D005913 ORTHO05D007138 5.6e-38 162.2 253 45.5
ECA247G1367 Erigeron canadensis HOM05D005913 ORTHO05D007138 5.6e-38 162.2 236 45.3
SGA_v2.0_scaffold25G11107 Striga asiatica HOM05D005913 ORTHO05D007138 5.6e-38 162.2 269 43.9
Lalb_Chr19g0128221 Lupinus albus HOM05D005913 ORTHO05D007138 1.2e-37 161.0 266 43.6
AUR62001638 Chenopodium quinoa HOM05D005913 ORTHO05D007138 2.1e-37 160.2 263 43.7
Sabra06G0131300 Salix brachista HOM05D005913 ORTHO05D007138 3.6e-37 159.5 252 46.4
MELO3C025845.2 Cucumis melo HOM05D005913 ORTHO05D007138 2.3e-36 156.8 271 42.4
arahy.Tifrunner.gnm1.ann1.6RYY2X Arachis hypogaea HOM05D005913 ORTHO05D007138 4.0e-36 156.0 224 47.8
CDE04G2145 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 4.0e-36 156.0 215 48.8
Ca_09509_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 8.9e-36 154.8 192 53.6
Ca_30058_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 8.9e-36 154.8 192 53.6
HPP92_028632 Vanilla planifolia HOM05D005913 ORTHO05D007138 2.0e-35 153.7 241 43.6
EL10Ac7g16180 Beta vulgaris HOM05D005913 ORTHO05D007138 2.6e-35 153.3 270 42.6
TAR369G0609 Trochodendron aralioides HOM05D005913 ORTHO05D007138 2.6e-35 153.3 249 43.4
Migut.N03298 Erythranthe guttata HOM05D005913 ORTHO05D007138 3.4e-35 152.9 269 45.0
Peaxi162Scf00384g00045 Petunia axillaris HOM05D005913 ORTHO05D007138 1.3e-34 151.0 234 45.7
HPP92_002930 Vanilla planifolia HOM05D005913 ORTHO05D007138 1.3e-34 151.0 158 53.2
LjContig00155g0009730 Lotus japonicus HOM05D005913 ORTHO05D007138 2.2e-34 150.2 255 45.5
Psat3g002480 Pisum sativum HOM05D005913 ORTHO05D007138 2.9e-34 149.8 259 44.4
Glyma.05G235600 Glycine max HOM05D005913 ORTHO05D007138 3.7e-34 149.4 272 42.6
Phvul.001G033300 Phaseolus vulgaris HOM05D005913 ORTHO05D007138 3.7e-34 149.4 179 53.1
VMungo0647G0764 Vigna mungo HOM05D005913 ORTHO05D007138 8.3e-34 148.3 272 44.1
MD03G1068700 Malus domestica HOM05D005913 ORTHO05D007138 2.4e-33 146.7 88 83.0
Medtr7g117410 Medicago truncatula HOM05D005913 ORTHO05D007138 4.1e-33 146.0 268 42.2
Lj4A493T9 Lonicera japonica HOM05D005913 ORTHO05D007138 5.4e-33 145.6 234 44.4
PSO675G7356 Papaver somniferum HOM05D005913 ORTHO05D007138 7.8e-32 141.7 260 41.5
COL.COLO4_19170 Corchorus olitorius HOM05D005913 ORTHO05D001548 2.3e-31 140.2 249 43.4
PSO339G4526 Papaver somniferum HOM05D005913 ORTHO05D007138 1.9e-30 137.1 260 40.8
CDE04G2770 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 1.6e-29 134.0 214 48.1
Aqoxy4G02545 Aquilegia oxysepala HOM05D005913 ORTHO05D007138 2.1e-29 133.7 256 40.6
QL01p038500 Quercus lobata HOM05D005913 ORTHO05D007138 2.1e-29 133.7 222 45.0
PSO801G0017 Papaver somniferum HOM05D005913 ORTHO05D007138 2.8e-29 133.3 222 44.6
unitig_26.g9973 Utricularia gibba HOM05D005913 ORTHO05D007138 3.1e-28 129.8 94 72.3
Ah.15g099480 Amaranthus hybridus HOM05D005913 ORTHO05D007138 4.0e-28 129.4 253 38.7
Os10g0500500 Oryza sativa ssp. japonica HOM05D005913 ORTHO05D007138 2.6e-27 126.7 211 42.7
Zm00001eb142300 Zea mays HOM05D005913 ORTHO05D007138 2.6e-27 126.7 153 51.6
Zm00001eb012770 Zea mays HOM05D005913 ORTHO05D007138 4.9e-26 122.5 214 44.4
TPR.G3936 Trifolium pratense HOM05D005913 ORTHO05D007138 5.4e-25 119.0 70 82.9
arahy.Tifrunner.gnm1.ann1.6CR394 Arachis hypogaea HOM05D005913 ORTHO05D007138 2.1e-24 117.1 71 84.5
SalBow6G3913 Salvia bowleyana HOM05D005913 ORTHO05D007138 3.0e-23 113.2 88 69.3
TPR.G37238 Trifolium pratense HOM05D005913 ORTHO05D007138 1.5e-22 110.9 123 55.3
Actinidia16099 Actinidia chinensis HOM05D005913 ORTHO05D007138 6.8e-20 102.1 222 36.9
SEGI_13957 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 3.4e-19 99.8 70 70.0
BcaC07g42450 Brassica carinata HOM05D005913 ORTHO05D007138 2.1e-16 90.5 151 41.1
Atru.chr3.4202 Acer truncatum HOM05D005913 ORTHO05D007138 6.0e-16 89.0 54 77.8
Peaxi162Scf00378g00212 Petunia axillaris HOM05D000011 ORTHO05D010520 1.7e-15 87.4 48 93.8
Pp3c9_1670 Physcomitrium patens HOM05D005913 ORTHO05D007138 6.6e-15 85.5 128 42.2
CARHR102160 Cardamine hirsuta HOM05D005913 ORTHO05D007138 8.7e-15 85.1 110 53.6
Solyc01g058530.4 Solanum lycopersicum HOM05D005913 ORTHO05D007138 1.1e-14 84.7 62 67.7
AagrBONN_evm.TU.Sc2ySwM_362.942 Anthoceros agrestis HOM05D005913 ORTHO05D007138 6.2e-13 79.0 132 39.4
Mapoly0046s0093 Marchantia polymorpha HOM05D005913 ORTHO05D007138 9.0e-12 75.1 204 34.3
CBR_g41534 Chara braunii HOM05D005913 ORTHO05D007138 1.3e-10 71.2 70 51.4
Atru.chr3.4201 Acer truncatum HOM05D005913 ORTHO05D007138 3.9e-07 59.7 179 31.8
SEGI_23907 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 9.6e-06 55.1 151 33.8


User provided reference genes

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