Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G07060 Arabidopsis thaliana HOM05D007204 ORTHO05D008593 1.7e-149 532.7 278 100.0
AL1G17180 Arabidopsis lyrata HOM05D007204 ORTHO05D008593 1.1e-119 433.7 251 90.8
CARHR006750 Cardamine hirsuta HOM05D007204 ORTHO05D008593 9.2e-108 394.0 251 82.5
Sp1g05780 Schrenkiella parvula HOM05D007204 ORTHO05D008593 2.3e-106 389.4 252 82.9
Carub.0001s0635 Capsella rubella HOM05D007204 ORTHO05D008593 1.9e-105 386.3 248 81.0
C05p05140 Brassica napus HOM05D007204 ORTHO05D008593 1.1e-100 370.5 251 78.9
BcaC05g24670 Brassica carinata HOM05D007204 ORTHO05D008593 4.2e-100 368.6 251 78.1
A10p05600 Brassica napus HOM05D007204 ORTHO05D008593 2.7e-99 365.9 252 78.6
BcaNung06767 Brassica carinata HOM05D007204 ORTHO05D008593 1.3e-96 357.1 245 77.1
BraA10t42821Z Brassica rapa HOM05D007204 ORTHO05D008593 1.3e-96 357.1 276 72.8
Aa31LG1G8110 Aethionema arabicum HOM05D007204 ORTHO05D008593 3.1e-95 352.4 244 77.0
BolC5t29286H Brassica oleracea HOM05D007204 ORTHO05D008593 5.3e-95 351.7 275 70.5
Thhalv10009490m.g Eutrema salsugineum HOM05D007204 ORTHO05D008593 2.0e-94 349.7 214 86.9
BcaNung06763 Brassica carinata HOM05D007204 ORTHO05D008593 2.2e-93 346.3 272 70.2
THA.LOC104800761 Tarenaya hassleriana HOM05D007204 ORTHO05D008593 4.6e-75 285.4 249 62.7
BcaC05g24674 Brassica carinata HOM05D007204 ORTHO05D008593 1.1e-71 274.2 194 76.8
TWI31G1133 Tripterygium wilfordii HOM05D007204 ORTHO05D008593 4.5e-54 215.7 242 48.8
GSVIVG01024663001 Vitis vinifera HOM05D007204 ORTHO05D008593 2.6e-49 199.9 227 48.9
QL01p040026 Quercus lobata HOM05D007204 ORTHO05D008593 1.3e-48 197.6 234 49.6
Atru.chr3.4133 Acer truncatum HOM05D007204 ORTHO05D008593 4.8e-48 195.7 240 45.8
Duzib168G0028 Durio zibethinus HOM05D007204 ORTHO05D008593 1.1e-47 194.5 239 44.4
Dinv09663 Davidia involucrata HOM05D007204 ORTHO05D008593 7.0e-47 191.8 234 46.6
CiPaw.14G055100 Carya illinoinensis HOM05D007204 ORTHO05D008593 3.5e-46 189.5 233 47.2
PGR102G0940 Punica granatum HOM05D007204 ORTHO05D008593 4.5e-46 189.1 240 43.8
COL.COLO4_11129 Corchorus olitorius HOM05D007204 ORTHO05D008593 5.9e-46 188.7 247 43.7
Actinidia32616 Actinidia chinensis HOM05D007204 ORTHO05D008593 1.0e-45 188.0 247 46.2
FAN16G2350 Fragaria x ananassa HOM05D007204 ORTHO05D008593 8.5e-45 184.9 241 45.6
Nn2g10986 Nelumbo nucifera HOM05D007204 ORTHO05D008593 3.2e-44 183.0 234 45.7
Thecc.09G355900 Theobroma cacao HOM05D007204 ORTHO05D008593 3.2e-44 183.0 232 45.3
Gohir.D03G142400 Gossypium hirsutum HOM05D007204 ORTHO05D008593 5.5e-44 182.2 235 43.0
RcHm_v2.0_Chr5g0071301 Rosa chinensis HOM05D007204 ORTHO05D008593 5.5e-44 182.2 241 45.2
FvH4_3g39530 Fragaria vesca HOM05D007204 ORTHO05D008593 7.2e-44 181.8 241 45.2
MD11G1063300 Malus domestica HOM05D007204 ORTHO05D008593 9.4e-44 181.4 234 46.2
FAN25G1877 Fragaria x ananassa HOM05D007204 ORTHO05D008593 1.6e-43 180.6 241 45.2
Prupe.6G050500 Prunus persica HOM05D007204 ORTHO05D008593 1.6e-43 180.6 242 44.2
Gorai.003G149500 Gossypium raimondii HOM05D007204 ORTHO05D008593 2.3e-42 176.8 232 42.7
Nitab4.5_0007880g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 1.2e-41 174.5 243 42.0
PSO801G0770 Papaver somniferum HOM05D007204 ORTHO05D008593 9.7e-41 171.4 233 45.9
Ciclev10029273m.g Citrus clementina HOM05D007204 ORTHO05D008593 1.3e-40 171.0 197 46.2
Migut.N00766 Erythranthe guttata HOM05D007204 ORTHO05D008593 1.8e-39 167.2 233 42.1
Sed0020276 Sechium edule HOM05D007204 ORTHO05D008593 1.8e-39 167.2 235 40.9
Potri.001G281500 Populus trichocarpa HOM05D007204 ORTHO05D008593 2.4e-39 166.8 242 44.2
VMungo0540G1924 Vigna mungo HOM05D007204 ORTHO05D008593 3.1e-39 166.4 218 44.5
MELO3C026086.2 Cucumis melo HOM05D007204 ORTHO05D008593 4.1e-39 166.0 227 44.9
Rhsim13G0065200 Rhododendron simsii HOM05D007204 ORTHO05D008593 5.3e-39 165.6 311 38.6
HanXRQChr08g0229231 Helianthus annuus HOM05D007204 ORTHO05D008593 9.1e-39 164.9 236 44.5
Phvul.006G073000 Phaseolus vulgaris HOM05D007204 ORTHO05D008593 2.0e-38 163.7 225 44.0
Cfa011760 Carpinus fangiana HOM05D007204 ORTHO05D008593 3.5e-38 162.9 195 49.2
PSO339G1295 Papaver somniferum HOM05D007204 ORTHO05D008593 3.5e-38 162.9 231 42.9
Cc01_g14730 Coffea canephora HOM05D007204 ORTHO05D008593 5.9e-38 162.2 229 42.8
TAR623G0341 Trochodendron aralioides HOM05D007204 ORTHO05D008593 7.7e-38 161.8 192 46.9
Lj6g0005890 Lotus japonicus HOM05D007204 ORTHO05D008593 1.3e-37 161.0 231 41.6
Manes.17G034600 Manihot esculenta HOM05D007204 ORTHO05D008593 2.9e-37 159.8 228 42.1
SGA_v2.0_scaffold146G36125 Striga asiatica HOM05D007204 ORTHO05D008593 3.8e-37 159.5 235 40.9
Eucgr.B03990 Eucalyptus grandis HOM05D007204 ORTHO05D008593 5.0e-37 159.1 238 39.5
Lsat_1_v5_gn_9_18401 Lactuca sativa HOM05D007204 ORTHO05D008593 5.0e-37 159.1 238 41.2
FAN11G3207 Fragaria x ananassa HOM05D007204 ORTHO05D008593 6.5e-37 158.7 211 45.0
CsaV3_1G015330 Cucumis sativus L. HOM05D007204 ORTHO05D008593 1.5e-36 157.5 226 42.9
PGSC0003DMG400030457 Solanum tuberosum HOM05D007204 ORTHO05D008593 1.9e-36 157.1 235 41.7
Psat5g153840 Pisum sativum HOM05D007204 ORTHO05D008593 3.2e-36 156.4 236 42.8
TPR.G32886 Trifolium pratense HOM05D007204 ORTHO05D008593 9.4e-36 154.8 235 42.1
Peaxi162Scf00390g00079 Petunia axillaris HOM05D007204 ORTHO05D008593 2.1e-35 153.7 247 39.7
FAN21G2638 Fragaria x ananassa HOM05D007204 ORTHO05D008593 6.1e-35 152.1 216 44.0
MBI03_g33621_MAGBIO Magnolia biondii HOM05D007204 ORTHO05D008593 8.0e-35 151.8 296 37.2
DCAR_012274 Daucus carota HOM05D007204 ORTHO05D008593 1.0e-34 151.4 179 46.9
Hma1.2p1_0841F.1_g226930 Hydrangea macrophylla HOM05D007204 ORTHO05D008593 3.0e-34 149.8 165 52.7
AUR62009682 Chenopodium quinoa HOM05D007204 ORTHO05D008593 5.2e-34 149.1 226 42.0
Sc21g0005220 Simmondsia chinensis HOM05D007204 ORTHO05D008593 2.0e-33 147.1 225 41.3
CANSAT54G2573 Cannabis sativa HOM05D007204 ORTHO05D008593 5.7e-33 145.6 182 47.3
arahy.Tifrunner.gnm1.ann1.IVNQ32 Arachis hypogaea HOM05D007204 ORTHO05D008593 1.7e-32 144.1 255 36.9
ClCG03G000270 Citrullus lanatus HOM05D007204 ORTHO05D008593 1.7e-32 144.1 231 40.3
arahy.Tifrunner.gnm1.ann1.QCA2Y7 Arachis hypogaea HOM05D007204 ORTHO05D008593 3.7e-32 142.9 244 38.1
Gohir.A03G026100 Gossypium hirsutum HOM05D007204 ORTHO05D008593 3.7e-32 142.9 190 41.1
MSTRG.9779 Avicennia marina HOM05D007204 ORTHO05D008593 1.6e-30 137.5 226 38.5
Zm00001eb195020 Zea mays HOM05D007204 ORTHO05D008593 1.6e-30 137.5 247 38.1
HPP92_019711 Vanilla planifolia HOM05D000883 ORTHO05D002942 4.5e-30 136.0 232 40.1
Aqoxy2G00798 Aquilegia oxysepala HOM05D007204 ORTHO05D008593 5.9e-30 135.6 174 45.4
AUR62001886 Chenopodium quinoa HOM05D007204 ORTHO05D008593 1.9e-28 130.6 267 36.3
ECA247G3086 Erigeron canadensis HOM05D007204 ORTHO05D008593 3.3e-28 129.8 343 31.8
Os12g0106100 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 1.6e-27 127.5 223 40.4
Os11g0106800 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 4.7e-27 125.9 238 40.3
Medtr3g031720 Medicago truncatula HOM05D007204 ORTHO05D008593 2.3e-26 123.6 194 42.8
Nitab4.5_0009741g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 2.3e-26 123.6 296 32.1
Medtr3g031680 Medicago truncatula HOM05D007204 ORTHO05D008593 6.8e-26 122.1 186 40.9
Lj2A1091T48 Lonicera japonica HOM05D007204 ORTHO05D008593 2.6e-25 120.2 118 53.4
SalBow2G2431 Salvia bowleyana HOM05D007204 ORTHO05D008593 2.2e-24 117.1 180 40.0
Glyma.18G058101 Glycine max HOM05D007204 ORTHO05D008593 3.7e-24 116.3 133 45.1
Oeu034090.2 Olea europaea HOM05D007204 ORTHO05D008593 3.7e-24 116.3 240 35.8
Lalb_Chr15g0083171 Lupinus albus HOM05D007204 ORTHO05D008593 1.1e-23 114.8 134 47.0
SGA_v2.0_scaffold120G32948 Striga asiatica HOM05D007204 ORTHO05D008593 3.5e-22 109.8 326 30.4
unitig_94.g28350 Utricularia gibba HOM05D007204 ORTHO05D008593 3.5e-22 109.8 216 34.3
Hund18956 Selenicereus undatus HOM05D007204 ORTHO05D008593 6.6e-21 105.5 173 39.3
Solyc06g082320.4 Solanum lycopersicum HOM05D007204 ORTHO05D008593 8.6e-21 105.1 135 46.7
Sabra16G0175100 Salix brachista HOM05D007204 ORTHO05D008593 3.7e-16 89.7 153 42.5
SEGI_02179 Sequoiadendron giganteum HOM05D056589 ORTHO05D008593 3.7e-16 89.7 216 31.9
vmacro02927 Vaccinium macrocarpon HOM05D007204 ORTHO05D008593 3.7e-16 89.7 194 34.5
CSS0017241 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 2.0e-14 84.0 132 39.4
ATR0174G030 Amborella trichopoda HOM05D007204 ORTHO05D008593 2.7e-14 83.6 176 32.4
CSS0041349 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 6.0e-14 82.4 132 38.6
Sopen06g033710 Solanum pennellii HOM05D007204 ORTHO05D008593 1.1e-12 78.2 140 36.4


User provided reference genes

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