Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G06810 Arabidopsis thaliana HOM05D026845 ORTHO05D018439 5.2e-116 421.0 203 100.0
AT1G05400 Arabidopsis thaliana HOM05D026845 ORTHO05D018439 6.0e-48 194.9 116 80.2
AT4G20480 Arabidopsis thaliana HOM05D001636 ORTHO05D018439 4.6e-32 142.1 157 51.6
CARHR002680 Cardamine hirsuta HOM05D001636 ORTHO05D018439 8.4e-26 121.3 177 42.9
AL1G17090 Arabidopsis lyrata HOM05D001456 ORTHO05D013186 3.9e-23 112.5 170 41.2
AL1G15310 Arabidopsis lyrata HOM05D001636 ORTHO05D011036 4.3e-22 109.0 175 41.1
AL6G52880 Arabidopsis lyrata HOM05D001636 ORTHO05D013186 5.9e-19 98.6 192 32.3
AL1G15240 Arabidopsis lyrata HOM05D003028 ORTHO05D018439 5.5e-17 92.0 110 48.2
CARHR005160 Cardamine hirsuta HOM05D001456 ORTHO05D011036 9.4e-17 91.3 170 38.2
Carub.0033s0006 Capsella rubella HOM05D001636 ORTHO05D013186 1.2e-16 90.9 170 35.9
Carub.0002s0630 Capsella rubella HOM05D001456 ORTHO05D013186 2.1e-16 90.1 174 37.4
AL3G48630 Arabidopsis lyrata HOM05D001456 ORTHO05D013186 3.9e-15 85.9 175 37.7
AL1G45330 Arabidopsis lyrata HOM05D001456 ORTHO05D011036 5.1e-15 85.5 169 34.9
AL1G16270 Arabidopsis lyrata HOM05D001456 ORTHO05D011036 6.7e-15 85.1 171 33.3
Carub.0005s2203 Capsella rubella HOM05D001636 ORTHO05D013186 7.4e-14 81.6 171 36.3
Carub.0006s3667 Capsella rubella HOM05D001636 ORTHO05D013186 7.4e-14 81.6 168 35.1
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 9.7e-14 81.3 170 35.9
Carub.0001s4175 Capsella rubella HOM05D001636 ORTHO05D013186 3.7e-13 79.3 170 37.1
AL1G14200 Arabidopsis lyrata HOM05D001636 ORTHO05D013186 4.8e-13 79.0 176 35.8
Carub.0008s0517 Capsella rubella HOM05D001636 ORTHO05D013186 4.8e-13 79.0 175 32.0
Carub.0007s3262 Capsella rubella HOM05D001636 ORTHO05D011036 6.3e-13 78.6 184 29.3
AL1G35600 Arabidopsis lyrata HOM05D001636 ORTHO05D013186 1.5e-11 73.9 170 32.4
CARHR000960 Cardamine hirsuta HOM05D001456 ORTHO05D018439 4.5e-11 72.4 72 54.2
CARHR249280 Cardamine hirsuta HOM05D001636 ORTHO05D018439 7.7e-11 71.6 55 65.5
C01p00030 Brassica napus HOM05D001456 ORTHO05D031996 1.3e-10 70.9 180 30.0
BolC1t00009H Brassica oleracea HOM05D001456 ORTHO05D031996 1.3e-10 70.9 176 30.7
BcaNung01309 Brassica carinata HOM05D001456 ORTHO05D031996 1.7e-10 70.5 171 29.2
Carub.0001s0454 Capsella rubella HOM05D001636 ORTHO05D013186 1.7e-10 70.5 170 32.9
A06p35510 Brassica napus HOM05D001636 ORTHO05D009134 2.2e-10 70.1 187 30.5
BraA06t26475Z Brassica rapa HOM05D001636 ORTHO05D009134 2.2e-10 70.1 183 30.1
AL9U10980 Arabidopsis lyrata HOM05D062308 ORTHO05D009134 3.8e-10 69.3 172 32.0
BraA09t42126Z Brassica rapa HOM05D001456 ORTHO05D011036 3.8e-10 69.3 180 26.7
Carub.0001s0200 Capsella rubella HOM05D001636 ORTHO05D013186 3.8e-10 69.3 175 33.7
AL5G21850 Arabidopsis lyrata HOM05D001456 ORTHO05D011036 5.0e-10 68.9 173 31.2
CARHR249230 Cardamine hirsuta HOM05D026845 ORTHO05D018439 5.0e-10 68.9 99 41.4
Thhalv10000121m.g Eutrema salsugineum HOM05D001636 ORTHO05D009134 6.5e-10 68.6 183 32.2
C01p33890 Brassica napus HOM05D001636 ORTHO05D009134 8.5e-10 68.2 201 31.3
BraA05t18996Z Brassica rapa HOM05D001636 ORTHO05D018456 3.2e-09 66.2 171 29.2
BolSC55t61225H Brassica oleracea HOM05D001636 ORTHO05D018456 4.2e-09 65.9 171 29.2
BcaC02g12798 Brassica carinata HOM05D001636 ORTHO05D018456 5.5e-09 65.5 171 29.2
C04p00350 Brassica napus HOM05D001636 ORTHO05D018456 5.5e-09 65.5 171 29.2
BolC4t21677H Brassica oleracea HOM05D001636 ORTHO05D018456 5.5e-09 65.5 171 29.2
AL3G40410 Arabidopsis lyrata HOM05D001636 ORTHO05D009134 9.4e-09 64.7 207 27.5
AL3G38360 Arabidopsis lyrata HOM05D001636 ORTHO05D018456 1.2e-08 64.3 188 27.7
BcaNung02002 Brassica carinata HOM05D001636 ORTHO05D009134 1.2e-08 64.3 187 29.9
C07p43040 Brassica napus HOM05D001636 ORTHO05D009134 1.2e-08 64.3 187 29.9
BolC7t44832H Brassica oleracea HOM05D001636 ORTHO05D009134 1.2e-08 64.3 187 29.9
BcaNung05633 Brassica carinata HOM05D001636 ORTHO05D009134 1.6e-08 63.9 183 26.2
BNapus_Darmor_BZH_scaffold_188p00110 Brassica napus HOM05D001636 ORTHO05D018456 1.6e-08 63.9 171 29.2
Thhalv10005934m.g Eutrema salsugineum HOM05D001636 ORTHO05D009134 3.6e-08 62.8 180 30.0
AL5G23770 Arabidopsis lyrata HOM05D001456 ORTHO05D011036 6.1e-08 62.0 147 32.0
Carub.0008s0675 Capsella rubella HOM05D001636 ORTHO05D013186 6.1e-08 62.0 169 32.5
AL1G11090 Arabidopsis lyrata HOM05D001456 ORTHO05D011036 7.9e-08 61.6 123 36.6
BcaC06g33505 Brassica carinata HOM05D001636 ORTHO05D009134 7.9e-08 61.6 181 28.7
C09p57360 Brassica napus HOM05D001636 ORTHO05D009134 7.9e-08 61.6 186 29.6
Thhalv10017826m.g Eutrema salsugineum HOM05D008913 ORTHO05D011317 7.9e-08 61.6 191 29.3
AL8G35170 Arabidopsis lyrata HOM05D001636 ORTHO05D009134 1.4e-07 60.8 179 26.8
Carub.0002s0629 Capsella rubella HOM05D001636 ORTHO05D013186 1.4e-07 60.8 170 30.6
C07p49300 Brassica napus HOM05D001636 ORTHO05D009134 1.8e-07 60.5 203 28.1
Carub.0003s0625 Capsella rubella HOM05D001636 ORTHO05D009134 1.8e-07 60.5 170 27.1
A07p35040 Brassica napus HOM05D001636 ORTHO05D009134 2.3e-07 60.1 195 27.7
C06p41230 Brassica napus HOM05D001636 ORTHO05D009134 2.3e-07 60.1 195 27.7
BolC6t39302H Brassica oleracea HOM05D001636 ORTHO05D009134 2.3e-07 60.1 195 27.7
Carub.0001s0130 Capsella rubella HOM05D001456 ORTHO05D009134 2.3e-07 60.1 204 27.0
BcaC08g46306 Brassica carinata HOM05D001636 ORTHO05D009134 3.0e-07 59.7 179 27.9
C02p62340 Brassica napus HOM05D001636 ORTHO05D009134 3.0e-07 59.7 178 29.2
BolC6t39297H Brassica oleracea HOM05D001636 ORTHO05D009134 3.0e-07 59.7 182 27.5
BolC9t58608H Brassica oleracea HOM05D001636 ORTHO05D009134 3.0e-07 59.7 184 29.3
C06p41280 Brassica napus HOM05D001636 ORTHO05D009134 3.9e-07 59.3 186 26.3
BcaC02g12800 Brassica carinata HOM05D001636 ORTHO05D018456 5.1e-07 58.9 185 25.9
C07p44880 Brassica napus HOM05D001456 ORTHO05D014991 5.1e-07 58.9 198 27.8
AL5G45620 Arabidopsis lyrata HOM05D001636 ORTHO05D009134 6.7e-07 58.5 181 30.4
BolC7t45437H Brassica oleracea HOM05D001636 ORTHO05D009134 6.7e-07 58.5 73 43.8
PGSC0003DMG400001456 Solanum tuberosum HOM05D001456 ORTHO05D002799 6.7e-07 58.5 126 37.3
BcaC04g23180 Brassica carinata HOM05D001636 ORTHO05D009134 8.8e-07 58.2 171 26.3
BcaC06g33215 Brassica carinata HOM05D001456 ORTHO05D014991 8.8e-07 58.2 203 27.1
C07p50280 Brassica napus HOM05D001636 ORTHO05D009134 1.5e-06 57.4 214 24.8
Carub.0002s1385 Capsella rubella HOM05D001636 ORTHO05D009134 1.5e-06 57.4 197 26.9
A01p18890 Brassica napus HOM05D006174 ORTHO05D007987 2.0e-06 57.0 176 25.6
C07p48170 Brassica napus HOM05D001636 ORTHO05D009134 2.0e-06 57.0 179 25.7
BolC7t45340H Brassica oleracea HOM05D001636 ORTHO05D009134 2.0e-06 57.0 179 25.7
BraA01t01830Z Brassica rapa HOM05D006174 ORTHO05D007987 2.0e-06 57.0 176 25.6
BraA01t04560Z Brassica rapa HOM05D001636 ORTHO05D033589 2.0e-06 57.0 184 29.9
CAN.G497.102 Capsicum annuum HOM05D001456 ORTHO05D002799 2.0e-06 57.0 125 36.8
Thhalv10024069m.g Eutrema salsugineum HOM05D001636 ORTHO05D009134 2.0e-06 57.0 177 28.2
AL8G26350 Arabidopsis lyrata HOM05D001456 ORTHO05D011036 2.6e-06 56.6 68 45.6
AT3G62850 Arabidopsis thaliana HOM05D001636 ORTHO05D009134 2.6e-06 56.6 122 34.4
C01p23810 Brassica napus HOM05D001636 ORTHO05D040027 2.6e-06 56.6 169 27.2
BolC2t08674H Brassica oleracea HOM05D001636 ORTHO05D009134 2.6e-06 56.6 179 26.3
Carub.0007s3604 Capsella rubella HOM05D001456 ORTHO05D023701 2.6e-06 56.6 186 30.1
CARHR070150 Cardamine hirsuta HOM05D001456 ORTHO05D009134 2.6e-06 56.6 104 33.7
A03p55260 Brassica napus HOM05D001636 ORTHO05D009134 3.3e-06 56.2 173 28.9
C04p70100 Brassica napus HOM05D001636 ORTHO05D009134 3.3e-06 56.2 179 26.3
Carub.0006s3666 Capsella rubella HOM05D026845 ORTHO05D013186 3.3e-06 56.2 116 31.0
A08p32940 Brassica napus HOM05D001636 ORTHO05D009134 4.4e-06 55.8 124 29.8
Ah.14g086290 Amaranthus hybridus HOM05D001456 ORTHO05D002799 5.7e-06 55.5 195 28.2
Nitab4.5_0003841g0010 Nicotiana tabacum HOM05D001456 ORTHO05D002799 5.7e-06 55.5 126 33.3
Solyc02g088850.3 Solanum lycopersicum HOM05D001456 ORTHO05D002799 5.7e-06 55.5 123 35.8
Sopen02g033560 Solanum pennellii HOM05D001456 ORTHO05D002799 5.7e-06 55.5 123 35.8
AL5G10320 Arabidopsis lyrata HOM05D001456 ORTHO05D001571 7.4e-06 55.1 92 34.8
BcaC09g52273 Brassica carinata HOM05D001636 ORTHO05D009134 7.4e-06 55.1 100 37.0
Nitab4.5_0007320g0020 Nicotiana tabacum HOM05D001456 ORTHO05D002799 7.4e-06 55.1 126 34.1
Atru.chr5.892 Acer truncatum HOM05D001456 ORTHO05D002799 9.7e-06 54.7 141 32.6
BcaB02g09846 Brassica carinata HOM05D001165 ORTHO05D001347 9.7e-06 54.7 188 25.5
BcaC03g15053 Brassica carinata HOM05D001636 ORTHO05D009134 9.7e-06 54.7 130 30.0
C07p44870 Brassica napus HOM05D001456 ORTHO05D014991 9.7e-06 54.7 105 36.2
Dinv12091 Davidia involucrata HOM05D001456 ORTHO05D002799 9.7e-06 54.7 143 31.5
PGR031G3055 Punica granatum HOM05D001456 ORTHO05D002799 9.7e-06 54.7 113 35.4
THA.LOC104818337 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 9.7e-06 54.7 135 33.3


User provided reference genes

Program Settings