Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G06515 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 3.1e-26 120.9 57 100.0
AL1G16530 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 5.3e-26 120.2 57 98.2
Carub.0001s0587 Capsella rubella HOM05D006514 ORTHO05D008138 5.3e-26 120.2 57 98.2
Thhalv10009956m.g Eutrema salsugineum HOM05D006514 ORTHO05D008138 5.8e-25 116.7 57 94.7
AT2G30942 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 2.5e-23 111.3 57 87.7
Carub.0004s1216 Capsella rubella HOM05D006514 ORTHO05D008138 2.5e-23 111.3 57 86.0
CARHR006120 Cardamine hirsuta HOM05D006514 ORTHO05D008138 5.5e-23 110.2 53 92.5
BcaB02g06800 Brassica carinata HOM05D006514 ORTHO05D008138 1.2e-22 109.0 53 94.3
BcaC07g42061 Brassica carinata HOM05D006514 ORTHO05D008138 1.2e-22 109.0 53 94.3
A09p66940 Brassica napus HOM05D006514 ORTHO05D008138 1.2e-22 109.0 53 94.3
A10p05150 Brassica napus HOM05D006514 ORTHO05D008138 1.2e-22 109.0 53 94.3
C05p04760 Brassica napus HOM05D006514 ORTHO05D008138 1.2e-22 109.0 53 94.3
C08p51170 Brassica napus HOM05D006514 ORTHO05D008138 1.2e-22 109.0 53 94.3
BolC5t29247H Brassica oleracea HOM05D006514 ORTHO05D008138 1.2e-22 109.0 53 94.3
BolC8t52644H Brassica oleracea HOM05D006514 ORTHO05D008138 1.2e-22 109.0 53 94.3
BraA09t42029Z Brassica rapa HOM05D006514 ORTHO05D008138 1.2e-22 109.0 53 94.3
BraA10t42782Z Brassica rapa HOM05D006514 ORTHO05D008138 1.2e-22 109.0 53 94.3
THA.LOC104800827 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 2.7e-22 107.8 56 83.9
BcaB06g28396 Brassica carinata HOM05D006514 ORTHO05D008138 4.6e-22 107.1 53 90.6
BcaB06g28465 Brassica carinata HOM05D006514 ORTHO05D008138 4.6e-22 107.1 53 90.6
C04p60100 Brassica napus HOM05D006514 ORTHO05D008138 4.6e-22 107.1 53 90.6
BolC4t27513H Brassica oleracea HOM05D006514 ORTHO05D008138 4.6e-22 107.1 53 90.6
AL4G25910 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 6.0e-22 106.7 53 88.7
A04p23650 Brassica napus HOM05D006514 ORTHO05D008138 2.3e-21 104.8 53 88.7
BraA04t17890Z Brassica rapa HOM05D006514 ORTHO05D008138 2.3e-21 104.8 53 88.7
Ciclev10023245m.g Citrus clementina HOM05D006514 ORTHO05D008138 2.3e-21 104.8 56 80.4
Gohir.D02G094200 Gossypium hirsutum HOM05D006514 ORTHO05D008138 3.9e-21 104.0 57 78.9
Gorai.005G107100 Gossypium raimondii HOM05D006514 ORTHO05D008138 3.9e-21 104.0 57 78.9
Dinv36061 Davidia involucrata HOM05D006514 ORTHO05D008138 6.7e-21 103.2 55 81.8
Gohir.A03G078101 Gossypium hirsutum HOM05D006514 ORTHO05D008138 8.7e-21 102.8 57 78.9
CiPaw.13G075100 Carya illinoinensis HOM05D006514 ORTHO05D008138 1.1e-20 102.4 55 80.0
Duzib093G1568 Durio zibethinus HOM05D000207 ORTHO05D001482 3.3e-20 100.9 56 76.8
RcHm_v2.0_Chr7g0176991 Rosa chinensis HOM05D006514 ORTHO05D008138 3.3e-20 100.9 55 80.0
THA.LOC104815841 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 3.3e-20 100.9 53 83.0
QL12p026537 Quercus lobata HOM05D006514 ORTHO05D008138 4.3e-20 100.5 53 83.0
QL12p026562 Quercus lobata HOM05D006514 ORTHO05D008138 4.3e-20 100.5 53 83.0
RcHm_v2.0_Chr5g0070251 Rosa chinensis HOM05D006514 ORTHO05D008138 4.3e-20 100.5 55 80.0
Migut.N00499 Erythranthe guttata HOM05D006514 ORTHO05D008138 5.7e-20 100.1 55 78.2
GSVIVG01037960001 Vitis vinifera HOM05D006514 ORTHO05D008138 5.7e-20 100.1 55 78.2
Duzib116G0168 Durio zibethinus HOM05D006514 ORTHO05D008138 7.4e-20 99.8 57 77.2
Thecc.08G024100 Theobroma cacao HOM05D006514 ORTHO05D008138 7.4e-20 99.8 57 77.2
FAN16G2060 Fragaria x ananassa HOM05D006514 ORTHO05D008138 9.7e-20 99.4 53 81.1
Prupe.6G054600 Prunus persica HOM05D006514 ORTHO05D008138 9.7e-20 99.4 53 83.0
Manes.05G162000 Manihot esculenta HOM05D006514 ORTHO05D008138 1.3e-19 99.0 55 80.0
Potri.002G263100 Populus trichocarpa HOM05D006514 ORTHO05D008138 1.6e-19 98.6 55 76.4
MSTRG.24295 Avicennia marina HOM05D006514 ORTHO05D008138 3.7e-19 97.4 55 80.0
FvH4_3g38980 Fragaria vesca HOM05D006514 ORTHO05D008138 4.8e-19 97.1 56 76.8
Hma1.2p1_0203F.1_g086530 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 4.8e-19 97.1 54 77.8
CiPaw.07G206900 Carya illinoinensis HOM05D006514 ORTHO05D008138 6.3e-19 96.7 53 75.5
Hma1.2p1_0023F.1_g014910 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 6.3e-19 96.7 54 77.8
Sed0005431 Sechium edule HOM05D006514 ORTHO05D008138 6.3e-19 96.7 55 76.4
CARHR124460 Cardamine hirsuta HOM05D006514 ORTHO05D008138 8.2e-19 96.3 53 79.2
Cc07_g09230 Coffea canephora HOM05D006514 ORTHO05D008138 8.2e-19 96.3 55 81.8
CsaV3_5G038690 Cucumis sativus L. HOM05D006514 ORTHO05D008138 8.2e-19 96.3 55 74.5
FAN21G1628 Fragaria x ananassa HOM05D006514 ORTHO05D008138 8.2e-19 96.3 53 79.2
Potri.001G000400 Populus trichocarpa HOM05D006514 ORTHO05D008138 8.2e-19 96.3 55 76.4
Potri.002G263300 Populus trichocarpa HOM05D006514 ORTHO05D008138 8.2e-19 96.3 55 76.4
MD11G1070700 Malus domestica HOM05D006514 ORTHO05D008138 1.1e-18 95.9 57 78.9
Oeu025460.1 Olea europaea HOM05D006514 ORTHO05D008138 1.1e-18 95.9 53 77.4
TWI12G0206 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 1.1e-18 95.9 55 76.4
Duzib041G0253 Durio zibethinus HOM05D006514 ORTHO05D008138 1.8e-18 95.1 53 75.5
PGSC0003DMG400015499 Solanum tuberosum HOM05D006514 ORTHO05D008138 2.4e-18 94.7 55 78.2
Migut.H00182 Erythranthe guttata HOM05D006514 ORTHO05D008138 3.1e-18 94.4 56 76.8
Oeu009866.1 Olea europaea HOM05D006514 ORTHO05D008138 3.1e-18 94.4 53 75.5
PGR004G0716 Punica granatum HOM05D006514 ORTHO05D008138 5.3e-18 93.6 55 72.7
unitig_85.g27236 Utricularia gibba HOM05D006514 ORTHO05D008138 5.3e-18 93.6 55 74.5
DCAR_025932 Daucus carota HOM05D006514 ORTHO05D008138 6.9e-18 93.2 50 82.0
MD03G1065900 Malus domestica HOM05D006514 ORTHO05D008138 6.9e-18 93.2 49 83.7
SalBow8G0801 Salvia bowleyana HOM05D006514 ORTHO05D008138 6.9e-18 93.2 53 79.2
Cc10_g03090 Coffea canephora HOM05D006514 ORTHO05D008138 9.0e-18 92.8 53 71.7
PSO339G3417 Papaver somniferum HOM05D006514 ORTHO05D008138 1.5e-17 92.0 55 72.7
CAN.G358.121 Capsicum annuum HOM05D006514 ORTHO05D008138 2.0e-17 91.7 54 70.4
Rhsim08G0113100 Rhododendron simsii HOM05D006514 ORTHO05D008138 2.6e-17 91.3 50 86.0
PSO801G0156 Papaver somniferum HOM05D006514 ORTHO05D008138 3.4e-17 90.9 55 72.7
CANSAT01G0756 Cannabis sativa HOM05D006514 ORTHO05D008138 7.6e-17 89.7 52 75.0
TWI36G0631 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 7.6e-17 89.7 53 71.7
Eucgr.F04183 Eucalyptus grandis HOM05D006514 ORTHO05D008138 1.0e-16 89.4 46 82.6
Nn1g05070 Nelumbo nucifera HOM05D006514 ORTHO05D008138 1.0e-16 89.4 52 71.2
PSO017G0544 Papaver somniferum HOM05D006514 ORTHO05D008138 1.0e-16 89.4 54 70.4
SHI24607 Sapria himalayana HOM05D006514 ORTHO05D008138 1.3e-16 89.0 52 75.0
vmacro17857 Vaccinium macrocarpon HOM05D006514 ORTHO05D008138 2.9e-16 87.8 53 75.5
Gohir.A01G116600 Gossypium hirsutum HOM05D006514 ORTHO05D008138 5.0e-16 87.0 46 82.6
Gohir.D01G105000 Gossypium hirsutum HOM05D006514 ORTHO05D008138 6.5e-16 86.7 46 82.6
Gorai.002G129000 Gossypium raimondii HOM05D006514 ORTHO05D008138 6.5e-16 86.7 46 82.6
CSS0043768 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 8.5e-16 86.3 55 76.4
TAR628G0909 Trochodendron aralioides HOM05D006514 ORTHO05D008138 2.5e-15 84.7 52 73.1
Lalb_Chr11g0074141 Lupinus albus HOM05D006514 ORTHO05D008138 3.2e-15 84.3 55 74.5
Aa31LG1G7590 Aethionema arabicum HOM05D006514 ORTHO05D008138 5.5e-15 83.6 87 52.9
Lalb_Chr13g0293771 Lupinus albus HOM05D006514 ORTHO05D008138 5.5e-15 83.6 55 65.5
FAN11G3963 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.6e-14 82.0 56 67.9
Zm00001eb368290 Zea mays HOM05D006514 ORTHO05D008138 1.6e-14 82.0 55 60.0
arahy.Tifrunner.gnm1.ann1.40255N Arachis hypogaea HOM05D006514 ORTHO05D008138 3.6e-14 80.9 55 67.3
Lalb_Chr08g0232711 Lupinus albus HOM05D006514 ORTHO05D008138 3.6e-14 80.9 51 76.5
Os07g0446900 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 3.6e-14 80.9 56 64.3
arahy.Tifrunner.gnm1.ann1.0361F1 Arachis hypogaea HOM05D006514 ORTHO05D008138 4.6e-14 80.5 55 67.3
arahy.Tifrunner.gnm1.ann1.TUTF01 Arachis hypogaea HOM05D006514 ORTHO05D008138 4.6e-14 80.5 55 67.3
Lj4g0001345 Lotus japonicus HOM05D006514 ORTHO05D008138 4.6e-14 80.5 55 69.1
arahy.Tifrunner.gnm1.ann1.4217G9 Arachis hypogaea HOM05D006514 ORTHO05D008138 6.1e-14 80.1 53 69.8
Phvul.002G183600 Phaseolus vulgaris HOM05D006514 ORTHO05D008138 2.3e-13 78.2 47 78.7
CDE04G3777 Ceratophyllum demersum HOM05D006514 ORTHO05D008138 6.7e-13 76.6 55 61.8
Glyma.05G140300 Glycine max HOM05D006514 ORTHO05D008138 6.7e-13 76.6 55 67.3
Glyma.08G095700 Glycine max HOM05D006514 ORTHO05D008138 8.8e-13 76.3 55 65.5
SEGI_00006 Sequoiadendron giganteum HOM05D006514 ORTHO05D008138 2.5e-12 74.7 50 64.0
Ca_07248_v3 Cicer arietinum L. HOM05D006514 ORTHO05D008138 7.4e-12 73.2 47 74.5
FAN16G1919 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.7e-11 72.0 92 43.5
Os04g0518650 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 3.7e-11 70.9 55 60.0
Zm00001eb096700 Zea mays HOM05D007724 ORTHO05D009363 6.3e-11 70.1 54 55.6
FAN25G0650 Fragaria x ananassa HOM05D006514 ORTHO05D008138 2.4e-10 68.2 31 96.8
ATR0733G176 Amborella trichopoda HOM05D006514 ORTHO05D008138 4.1e-10 67.4 55 60.0
FAN11G3335 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.2e-09 65.9 31 93.5
CSS0047171 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 3.4e-09 64.3 34 82.4
C04p41290 Brassica napus HOM05D006514 ORTHO05D008138 7.7e-09 63.2 31 83.9
Nitab4.5_0003410g0060 Nicotiana tabacum HOM05D006514 ORTHO05D008138 1.0e-08 62.8 47 68.1
Ah.06g182360 Amaranthus hybridus HOM05D006514 ORTHO05D008138 6.5e-08 60.1 28 92.9
Lsat_1_v5_gn_1_26540 Lactuca sativa HOM05D006514 ORTHO05D008138 6.5e-08 60.1 35 77.1
BolC4t25707H Brassica oleracea HOM05D040072 ORTHO05D033253 2.5e-07 58.2 57 54.4
CSS0042829 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 7.2e-07 56.6 79 48.1
CSS0047355 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 7.2e-07 56.6 79 48.1
Medtr7g024350 Medicago truncatula HOM05D006514 ORTHO05D008138 9.4e-07 56.2 31 77.4
Os07g0446600 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 9.4e-07 56.2 31 80.6
AagrBONN_evm.TU.Sc2ySwM_228.3660 Anthoceros agrestis HOM05D006514 ORTHO05D008138 2.1e-06 55.1 36 63.9
A04p07600 Brassica napus HOM05D040072 ORTHO05D033253 2.7e-06 54.7 57 54.4
BraA04t16452Z Brassica rapa HOM05D040072 ORTHO05D033253 2.7e-06 54.7 57 54.4


User provided reference genes

Program Settings