Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G06320 Arabidopsis thaliana HOM05D006335 ORTHO05D007617 1.5e-99 366.3 196 100.0
AL1G16330 Arabidopsis lyrata HOM05D006335 ORTHO05D007617 4.1e-70 268.5 200 77.5
Thhalv10009758m.g Eutrema salsugineum HOM05D006335 ORTHO05D007617 9.0e-41 171.0 127 74.0
BcaB03g13422 Brassica carinata HOM05D006335 ORTHO05D007617 2.6e-40 169.5 135 69.6
BolC8t47040H Brassica oleracea HOM05D006335 ORTHO05D007617 3.4e-40 169.1 130 71.5
BraA08t35509Z Brassica rapa HOM05D006335 ORTHO05D007617 3.4e-40 169.1 130 71.5
BcaC07g36801 Brassica carinata HOM05D006335 ORTHO05D007617 5.8e-40 168.3 131 71.0
BcaC07g42074 Brassica carinata HOM05D006335 ORTHO05D007617 7.6e-40 167.9 125 70.4
CARHR005880 Cardamine hirsuta HOM05D006335 ORTHO05D007617 9.9e-40 167.5 170 60.6
A08p36030 Brassica napus HOM05D006335 ORTHO05D007617 1.7e-39 166.8 130 70.8
C08p02480 Brassica napus HOM05D006335 ORTHO05D007617 3.8e-39 165.6 131 70.2
Carub.0001s0568 Capsella rubella HOM05D006335 ORTHO05D007617 1.4e-38 163.7 201 53.2
C08p51300 Brassica napus HOM05D006335 ORTHO05D007617 2.1e-37 159.8 127 68.5
BolC8t52656H Brassica oleracea HOM05D006335 ORTHO05D007617 2.1e-37 159.8 127 68.5
A09p67040 Brassica napus HOM05D006335 ORTHO05D007617 4.6e-37 158.7 124 68.5
BraA09t42038Z Brassica rapa HOM05D006335 ORTHO05D007617 4.6e-37 158.7 124 68.5
Sp1g05110 Schrenkiella parvula HOM05D006335 ORTHO05D007617 1.1e-35 154.1 133 66.2
Aa31LG1G7320 Aethionema arabicum HOM05D006335 ORTHO05D007617 1.1e-27 127.5 146 50.7
THA.LOC104816084 Tarenaya hassleriana HOM05D006335 ORTHO05D007617 5.5e-22 108.6 128 46.1
Hma1.2p1_0178F.1_g078870 Hydrangea macrophylla HOM05D006335 ORTHO05D007617 7.1e-22 108.2 136 44.9
Duzib147G1311 Durio zibethinus HOM05D006335 ORTHO05D007617 3.3e-19 99.4 132 42.4
QL08p041551 Quercus lobata HOM05D006335 ORTHO05D007617 5.7e-19 98.6 102 46.1
Gohir.A09G001600 Gossypium hirsutum HOM05D006335 ORTHO05D007617 2.8e-18 96.3 125 44.8
COL.COLO4_33572 Corchorus olitorius HOM05D006335 ORTHO05D007617 6.3e-18 95.1 110 44.5
Thecc.01G149900 Theobroma cacao HOM05D006335 ORTHO05D007617 1.4e-17 94.0 115 44.3
Cc05_g08270 Coffea canephora HOM05D006335 ORTHO05D007617 1.8e-17 93.6 103 45.6
RcHm_v2.0_Chr2g0129361 Rosa chinensis HOM05D006335 ORTHO05D007617 2.4e-17 93.2 109 39.4
Actinidia04365 Actinidia chinensis HOM05D006335 ORTHO05D007617 3.1e-17 92.8 128 40.6
Gorai.006G001500 Gossypium raimondii HOM05D006335 ORTHO05D007617 4.1e-17 92.4 120 43.3
Lalb_Chr01g0005971 Lupinus albus HOM05D006335 ORTHO05D007617 6.9e-17 91.7 102 42.2
Gohir.D09G001300 Gossypium hirsutum HOM05D006335 ORTHO05D007617 9.0e-17 91.3 120 42.5
Solyc12g010850.1 Solanum lycopersicum HOM05D006335 ORTHO05D007617 1.5e-16 90.5 100 48.0
RcHm_v2.0_Chr2g0129291 Rosa chinensis HOM05D006335 ORTHO05D007617 2.0e-16 90.1 116 40.5
arahy.Tifrunner.gnm1.ann1.E7WT9K Arachis hypogaea HOM05D006335 ORTHO05D007617 4.5e-16 89.0 97 44.3
Medtr4g079810 Medicago truncatula HOM05D006335 ORTHO05D007617 5.9e-16 88.6 103 39.8
Phvul.011G133700 Phaseolus vulgaris HOM05D006335 ORTHO05D007617 5.9e-16 88.6 174 34.5
FAN09G0462 Fragaria x ananassa HOM05D006335 ORTHO05D007617 7.7e-16 88.2 101 41.6
Sopen12g006210 Solanum pennellii HOM05D006335 ORTHO05D007617 7.7e-16 88.2 100 46.0
CiPaw.04G132900 Carya illinoinensis HOM05D006335 ORTHO05D007617 1.0e-15 87.8 105 42.9
FvH4_6g27220 Fragaria vesca HOM05D006335 ORTHO05D007617 1.0e-15 87.8 101 42.6
FAN14G0983 Fragaria x ananassa HOM05D006335 ORTHO05D007617 1.0e-15 87.8 101 42.6
Lj3g0002577 Lotus japonicus HOM05D006335 ORTHO05D007617 1.0e-15 87.8 184 33.7
Phvul.011G133000 Phaseolus vulgaris HOM05D006335 ORTHO05D007617 1.3e-15 87.4 174 33.3
Sed0026533 Sechium edule HOM05D006335 ORTHO05D007617 1.3e-15 87.4 126 39.7
BcaC07g42071 Brassica carinata HOM05D006335 ORTHO05D007617 1.7e-15 87.0 68 69.1
Prupe.3G117900 Prunus persica HOM05D006335 ORTHO05D007617 2.2e-15 86.7 120 37.5
VMungo1127G1825 Vigna mungo HOM05D006335 ORTHO05D007617 2.2e-15 86.7 156 34.6
arahy.Tifrunner.gnm1.ann1.IJ2KIS Arachis hypogaea HOM05D006335 ORTHO05D007617 2.9e-15 86.3 144 37.5
FAN05G4039 Fragaria x ananassa HOM05D006335 ORTHO05D007617 3.8e-15 85.9 133 37.6
Glyma.06G279000 Glycine max HOM05D006335 ORTHO05D007617 3.8e-15 85.9 114 36.8
MD09G1238400 Malus domestica HOM05D006335 ORTHO05D007617 5.0e-15 85.5 113 38.9
arahy.Tifrunner.gnm1.ann1.Y7YMH3 Arachis hypogaea HOM05D006335 ORTHO05D007617 6.5e-15 85.1 144 36.8
CANSAT64G2990 Cannabis sativa HOM05D006335 ORTHO05D007617 8.5e-15 84.7 101 40.6
Manes.01G133300 Manihot esculenta HOM05D006335 ORTHO05D007617 1.4e-14 84.0 136 34.6
Sabra05G0153900 Salix brachista HOM05D006335 ORTHO05D007617 2.5e-14 83.2 107 35.5
Aqoxy2G02728 Aquilegia oxysepala HOM05D006335 ORTHO05D007617 3.2e-14 82.8 105 41.0
FvH4_6g27231 Fragaria vesca HOM05D006335 ORTHO05D007617 3.2e-14 82.8 105 37.1
Lj1A685T55 Lonicera japonica HOM05D006335 ORTHO05D007617 3.2e-14 82.8 154 37.7
Cpa.g.sc209.36 Carica papaya HOM05D006335 ORTHO05D007617 4.2e-14 82.4 94 42.6
Glyma.06G277900 Glycine max HOM05D006335 ORTHO05D007617 4.2e-14 82.4 178 30.3
Medtr4g079460 Medicago truncatula HOM05D006335 ORTHO05D007617 5.5e-14 82.0 173 31.8
SHI18965 Sapria himalayana HOM05D006335 ORTHO05D007617 5.5e-14 82.0 102 43.1
Psat7g165440 Pisum sativum HOM05D006335 ORTHO05D007617 9.4e-14 81.3 179 33.5
Ca_18884_v3 Cicer arietinum L. HOM05D006335 ORTHO05D007617 1.6e-13 80.5 175 33.1
Phvul.011G131000 Phaseolus vulgaris HOM05D006335 ORTHO05D007617 1.6e-13 80.5 174 33.9
VMungo1127G1181 Vigna mungo HOM05D006335 ORTHO05D007617 2.1e-13 80.1 187 30.5
TWI59G1087 Tripterygium wilfordii HOM05D006335 ORTHO05D007617 2.7e-13 79.7 102 41.2
TAR626G0568 Trochodendron aralioides HOM05D006335 ORTHO05D007617 2.7e-13 79.7 138 37.7
Glyma.15G020200 Glycine max HOM05D006335 ORTHO05D007617 3.6e-13 79.3 178 29.8
Psat7g165600 Pisum sativum HOM05D006335 ORTHO05D007617 7.9e-13 78.2 179 32.4
TPR.G28309 Trifolium pratense HOM05D006335 ORTHO05D007617 1.0e-12 77.8 178 32.0
GSVIVG01034999001 Vitis vinifera HOM05D006335 ORTHO05D007617 1.0e-12 77.8 141 37.6
Potri.005G202500 Populus trichocarpa HOM05D006335 ORTHO05D007617 2.3e-12 76.6 102 38.2
Eucgr.K01124 Eucalyptus grandis HOM05D006335 ORTHO05D007617 3.9e-12 75.9 121 33.9
MD08G1181200 Malus domestica HOM05D006335 ORTHO05D007617 3.9e-12 75.9 101 37.6
TAR624G0615 Trochodendron aralioides HOM05D006335 ORTHO05D007617 3.9e-12 75.9 133 36.8
Prupe.3G121400 Prunus persica HOM05D006335 ORTHO05D007617 8.8e-12 74.7 107 36.4
RcHm_v2.0_Chr2g0129301 Rosa chinensis HOM05D006335 ORTHO05D007617 4.3e-11 72.4 109 33.9
Thecc.04G299900 Theobroma cacao HOM05D006335 ORTHO05D007617 1.7e-10 70.5 101 38.6
Dinv15448 Davidia involucrata HOM05D006335 ORTHO05D007617 2.8e-10 69.7 129 37.2
Sc05g0006750 Simmondsia chinensis HOM05D006335 ORTHO05D007617 2.8e-10 69.7 130 38.5
Nitab4.5_0008326g0020 Nicotiana tabacum HOM05D006335 ORTHO05D007617 4.8e-10 68.9 135 34.1
PGR142G3040 Punica granatum HOM05D006335 ORTHO05D007617 4.8e-10 68.9 137 36.5
AUR62038933 Chenopodium quinoa HOM05D006335 ORTHO05D007617 6.3e-10 68.6 187 31.0
Nn4g25571 Nelumbo nucifera HOM05D006335 ORTHO05D007617 6.3e-10 68.6 101 37.6
Dinv15181 Davidia involucrata HOM05D006335 ORTHO05D007617 1.4e-09 67.4 101 39.6
PGSC0003DMG400007858 Solanum tuberosum HOM05D006335 ORTHO05D007617 1.4e-09 67.4 100 39.0
Nitab4.5_0000537g0060 Nicotiana tabacum HOM05D006335 ORTHO05D007617 2.4e-09 66.6 151 35.1
Zm00001eb014800 Zea mays HOM05D006335 ORTHO05D007617 6.9e-09 65.1 93 40.9
Migut.D02221 Erythranthe guttata HOM05D006335 ORTHO05D007617 1.2e-08 64.3 98 35.7
Lsat_1_v5_gn_8_120600 Lactuca sativa HOM05D006335 ORTHO05D007617 1.5e-08 63.9 101 40.6
AUR62039006 Chenopodium quinoa HOM05D006335 ORTHO05D007617 2.0e-08 63.5 204 28.4
Aqoxy1G02076 Aquilegia oxysepala HOM05D006335 ORTHO05D007617 2.6e-08 63.2 130 33.1
arahy.Tifrunner.gnm1.ann1.DF2I7I Arachis hypogaea HOM05D006335 ORTHO05D007617 2.6e-08 63.2 97 34.0
Os03g0308600 Oryza sativa ssp. japonica HOM05D006335 ORTHO05D007617 2.6e-08 63.2 120 33.3
COL.COLO4_34622 Corchorus olitorius HOM05D006335 ORTHO05D007617 3.4e-08 62.8 118 34.7
Ciclev10016971m.g Citrus clementina HOM05D006335 ORTHO05D007617 4.5e-08 62.4 105 37.1
FAN14G0259 Fragaria x ananassa HOM05D006335 ORTHO05D007617 4.5e-08 62.4 74 40.5
ECA246G1597 Erigeron canadensis HOM05D006335 ORTHO05D007617 1.7e-07 60.5 101 37.6
TAR633G2592 Trochodendron aralioides HOM05D006335 ORTHO05D007617 1.7e-07 60.5 157 29.3
Zm00001eb014790 Zea mays HOM05D006335 ORTHO05D007617 2.2e-07 60.1 113 30.1
Hund07816 Selenicereus undatus HOM05D006335 ORTHO05D007617 2.9e-07 59.7 180 31.1
vmacro14418 Vaccinium macrocarpon HOM05D000550 ORTHO05D000400 6.5e-07 58.5 94 39.4
ECA238G3583 Erigeron canadensis HOM05D006335 ORTHO05D007617 1.9e-06 57.0 73 46.6
PSO170G4547 Papaver somniferum HOM05D006335 ORTHO05D007617 4.2e-06 55.8 143 28.7
Os03g0308700 Oryza sativa ssp. japonica HOM05D006335 ORTHO05D007617 5.5e-06 55.5 137 29.2


User provided reference genes

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