Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 1.1e-51 206.5 107 100.0
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 2.4e-48 195.3 107 94.4
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 3.8e-41 171.4 107 84.1
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 4.9e-41 171.0 107 84.1
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 4.9e-41 171.0 107 84.1
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 6.4e-41 170.6 107 83.2
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 1.4e-40 169.5 107 84.1
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 5.4e-40 167.5 107 81.3
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 7.1e-40 167.2 107 79.4
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 1.6e-39 166.0 107 81.3
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 1.6e-39 166.0 107 80.4
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 1.6e-39 166.0 107 81.3
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 1.6e-39 166.0 107 81.3
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 2.1e-39 165.6 107 81.3
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 2.1e-39 165.6 107 81.3
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 4.6e-39 164.5 107 80.4
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 6.0e-39 164.1 107 81.3
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 6.0e-39 164.1 107 81.3
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 7.8e-39 163.7 107 80.4
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 2.3e-38 162.2 107 78.5
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 1.5e-37 159.5 100 81.0
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 9.6e-37 156.8 107 76.6
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 2.8e-36 155.2 106 75.5
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 3.6e-36 154.8 104 76.0
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 1.1e-35 153.3 107 75.7
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 2.6e-34 148.7 107 72.9
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 3.4e-34 148.3 107 72.9
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 3.2e-32 141.7 105 69.5
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 1.6e-31 139.4 105 68.6
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.6e-31 139.4 105 68.6
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 2.1e-31 139.0 105 68.6
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 2.1e-31 139.0 107 68.2
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 2.7e-31 138.7 105 68.6
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 2.7e-31 138.7 105 68.6
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 2.7e-31 138.7 105 68.6
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 3.5e-31 138.3 107 69.2
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 1.0e-30 136.7 107 69.2
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 1.0e-30 136.7 106 67.9
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 1.7e-30 136.0 107 71.0
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 1.7e-30 136.0 107 64.5
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 1.7e-30 136.0 106 68.9
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 1.7e-30 136.0 106 67.0
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 2.3e-30 135.6 106 67.9
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 2.3e-30 135.6 106 67.9
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 3.9e-30 134.8 106 67.0
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 5.1e-30 134.4 105 66.7
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 6.6e-30 134.0 114 65.8
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 6.6e-30 134.0 116 62.1
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 8.7e-30 133.7 105 66.7
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 1.1e-29 133.3 107 64.5
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 1.1e-29 133.3 107 64.5
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 1.5e-29 132.9 107 64.5
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 1.5e-29 132.9 107 66.4
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 1.9e-29 132.5 107 65.4
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 2.5e-29 132.1 107 67.3
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 4.3e-29 131.3 107 60.7
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 4.3e-29 131.3 107 65.4
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 5.6e-29 131.0 105 60.0
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 5.6e-29 131.0 107 61.7
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 7.3e-29 130.6 107 59.8
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 9.6e-29 130.2 107 62.6
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 1.6e-28 129.4 107 61.7
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 1.6e-28 129.4 107 62.6
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 1.6e-28 129.4 107 62.6
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 1.6e-28 129.4 107 62.6
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 1.6e-28 129.4 107 66.4
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 2.1e-28 129.0 107 59.8
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 2.1e-28 129.0 105 61.9
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 2.8e-28 128.6 104 64.4
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 3.6e-28 128.3 105 63.8
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 4.8e-28 127.9 107 61.7
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 4.8e-28 127.9 105 63.8
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 6.2e-28 127.5 107 62.6
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 6.2e-28 127.5 104 62.5
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 1.1e-27 126.7 104 63.5
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 1.1e-27 126.7 104 63.5
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 1.4e-27 126.3 102 62.7
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 1.4e-27 126.3 102 62.7
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 1.4e-27 126.3 102 61.8
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 1.4e-27 126.3 104 59.6
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 2.4e-27 125.6 106 61.3
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 3.1e-27 125.2 109 64.2
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 3.1e-27 125.2 102 62.7
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 4.0e-27 124.8 102 62.7
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 6.9e-27 124.0 95 69.5
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 6.9e-27 124.0 104 61.5
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 9.0e-27 123.6 107 63.6
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 1.5e-26 122.9 104 58.7
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 2.6e-26 122.1 106 59.4
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 3.4e-26 121.7 102 62.7
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 3.4e-26 121.7 85 74.1
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 4.5e-26 121.3 107 57.0
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 4.5e-26 121.3 120 57.5
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 5.8e-26 120.9 107 57.9
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 1.7e-25 119.4 106 58.5
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 1.7e-25 119.4 108 63.0
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 1.7e-25 119.4 93 66.7
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 2.2e-25 119.0 107 58.9
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 2.9e-25 118.6 87 69.0
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 2.9e-25 118.6 125 50.4
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 3.8e-25 118.2 94 60.6
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 6.4e-25 117.5 93 61.3
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 1.1e-24 116.7 108 58.3
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 1.1e-24 116.7 98 59.2
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 1.9e-24 115.9 104 59.6
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 1.9e-24 115.9 126 53.2
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 2.4e-24 115.5 93 60.2
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 3.2e-24 115.2 108 60.2
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 4.2e-24 114.8 107 59.8
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 5.4e-24 114.4 99 62.6
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 9.3e-24 113.6 105 58.1
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 1.6e-23 112.8 96 55.2
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 1.6e-23 112.8 84 67.9
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 2.1e-23 112.5 90 61.1
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 4.6e-23 111.3 96 56.2
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 4.6e-23 111.3 93 63.4
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 7.9e-23 110.5 108 63.9
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.8e-22 109.4 108 63.0
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 2.3e-22 109.0 104 57.7
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 3.9e-22 108.2 99 59.6
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 5.1e-22 107.8 108 55.6
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 2.8e-20 102.1 105 51.4
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 2.8e-20 102.1 88 59.1
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 3.7e-20 101.7 98 58.2
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 4.8e-20 101.3 88 59.1
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 6.2e-20 100.9 89 59.6
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 6.2e-20 100.9 108 52.8
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 1.8e-19 99.4 108 51.9
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 1.3e-17 93.2 108 50.0
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 3.2e-16 88.6 75 61.3
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 9.3e-16 87.0 75 61.3
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 9.3e-16 87.0 75 66.7
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 1.5e-13 79.7 97 46.4
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 1.9e-13 79.3 73 54.8
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 3.3e-13 78.6 59 66.1
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 7.4e-13 77.4 57 68.4
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 9.6e-13 77.0 88 50.0
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 9.6e-13 77.0 86 50.0
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 2.1e-12 75.9 55 65.5
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 5.3e-11 71.2 70 60.0
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 7.6e-10 67.4 85 51.8
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 1.0e-09 67.0 67 49.3
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 1.3e-09 66.6 75 57.3
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 1.3e-09 66.6 51 64.7
Sp1g13000 Schrenkiella parvula HOM05D005271 ORTHO05D006072 9.3e-08 60.5 34 82.4
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 7.9e-07 57.4 83 47.0
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 3.0e-06 55.5 69 44.9
Cfa013238 Carpinus fangiana HOM05D005271 ORTHO05D006072 3.9e-06 55.1 37 73.0
Solyc11g065610.1 Solanum lycopersicum HOM05D005271 ORTHO05D006072 8.7e-06 53.9 37 67.6


User provided reference genes

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