Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G05440 Arabidopsis thaliana HOM05D005574 ORTHO05D007102 8.9e-181 637.1 394 100.0
AL1G15280 Arabidopsis lyrata HOM05D005574 ORTHO05D007102 7.1e-138 494.6 379 77.6
Sp1g04310 Schrenkiella parvula HOM05D005574 ORTHO05D007102 7.4e-119 431.4 381 66.4
Carub.0001s0477 Capsella rubella HOM05D005574 ORTHO05D007102 1.6e-113 413.7 382 69.4
Thhalv10002568m.g Eutrema salsugineum HOM05D005574 ORTHO05D007102 7.9e-113 411.4 387 63.8
BcaB02g06860 Brassica carinata HOM05D005574 ORTHO05D007102 3.0e-112 409.5 356 67.1
CARHR004930 Cardamine hirsuta HOM05D005574 ORTHO05D007102 1.5e-111 407.1 381 66.7
BcaC05g24386 Brassica carinata HOM05D005574 ORTHO05D007102 1.8e-101 373.6 350 60.6
C05p03780 Brassica napus HOM05D005574 ORTHO05D007102 1.8e-101 373.6 350 60.6
BolC5t29155H Brassica oleracea HOM05D005574 ORTHO05D007102 1.8e-101 373.6 350 60.6
THA.LOC104800960 Tarenaya hassleriana HOM05D005574 ORTHO05D007102 5.0e-99 365.5 379 53.3
A10p04140 Brassica napus HOM05D005574 ORTHO05D007102 4.8e-94 349.0 349 60.2
BraA10t42684Z Brassica rapa HOM05D005574 ORTHO05D007102 1.8e-93 347.1 349 59.9
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 2.2e-78 297.0 327 51.7
Atru.chr4.2447 Acer truncatum HOM05D005574 ORTHO05D007102 3.9e-67 259.6 347 41.5
Ciclev10005241m.g Citrus clementina HOM05D005574 ORTHO05D007102 5.0e-67 259.2 350 44.3
Potri.010G086100 Populus trichocarpa HOM05D005574 ORTHO05D007102 1.5e-66 257.7 343 43.7
COL.COLO4_05700 Corchorus olitorius HOM05D005574 ORTHO05D007102 7.5e-63 245.4 352 40.6
Sabra10G0057600 Salix brachista HOM05D005574 ORTHO05D007102 2.4e-61 240.4 337 42.1
Nn6g34090 Nelumbo nucifera HOM05D005574 ORTHO05D007102 9.2e-61 238.4 374 36.6
Thecc.04G192400 Theobroma cacao HOM05D005574 ORTHO05D007102 1.6e-60 237.7 385 38.2
MELO3C006525.2 Cucumis melo HOM05D005574 ORTHO05D007102 2.7e-60 236.9 351 40.5
TWI53G0495 Tripterygium wilfordii HOM05D005574 ORTHO05D007102 6.0e-60 235.7 347 39.8
QL06p002087 Quercus lobata HOM05D005574 ORTHO05D007102 1.0e-59 235.0 348 39.7
CsaV3_3G013190 Cucumis sativus L. HOM05D005574 ORTHO05D007102 1.5e-58 231.1 346 40.2
ClCG05G005090 Citrullus lanatus HOM05D005574 ORTHO05D007102 7.3e-58 228.8 346 39.6
Cfa015664 Carpinus fangiana HOM05D005574 ORTHO05D007102 2.1e-57 227.3 364 40.4
Sed0027704 Sechium edule HOM05D005574 ORTHO05D007102 2.1e-57 227.3 346 38.7
CiPaw.02G098000 Carya illinoinensis HOM05D005574 ORTHO05D007102 4.0e-56 223.0 386 38.3
Gorai.011G151700 Gossypium raimondii HOM05D005574 ORTHO05D007102 6.8e-56 222.2 348 39.4
GSVIVG01017997001 Vitis vinifera HOM05D005574 ORTHO05D007102 8.9e-56 221.9 354 37.3
CANSAT78G2217 Cannabis sativa HOM05D005574 ORTHO05D007102 1.2e-55 221.5 328 39.0
Gohir.A10G129500 Gossypium hirsutum HOM05D005574 ORTHO05D007102 1.2e-55 221.5 348 38.8
Gohir.D10G136700 Gossypium hirsutum HOM05D005574 ORTHO05D007102 2.6e-55 220.3 348 39.4
Duzib268G0255 Durio zibethinus HOM05D005574 ORTHO05D007102 1.3e-54 218.0 352 38.6
Haze_00883 Corylus avellana HOM05D005574 ORTHO05D007102 4.9e-54 216.1 364 39.3
Sed0003604 Sechium edule HOM05D005574 ORTHO05D007102 6.4e-54 215.7 347 38.9
BolC1t04542H Brassica oleracea HOM05D005574 ORTHO05D007102 1.1e-53 214.9 236 48.7
VMungo0720G0566 Vigna mungo HOM05D005574 ORTHO05D007102 1.1e-53 214.9 330 38.5
DCAR_030644 Daucus carota HOM05D005574 ORTHO05D007102 1.4e-53 214.5 335 40.6
AUR62034712 Chenopodium quinoa HOM05D005574 ORTHO05D007102 2.4e-53 213.8 352 39.5
Solyc09g082180.3 Solanum lycopersicum HOM05D005574 ORTHO05D007102 2.4e-53 213.8 342 36.5
BolC5t33236H Brassica oleracea HOM05D005574 ORTHO05D007102 3.2e-53 213.4 208 54.3
Phvul.007G058100 Phaseolus vulgaris HOM05D005574 ORTHO05D007102 5.4e-53 212.6 352 37.2
Prupe.1G015700 Prunus persica HOM05D005574 ORTHO05D007102 1.6e-52 211.1 347 38.6
RcHm_v2.0_Chr4g0415861 Rosa chinensis HOM05D005574 ORTHO05D007102 1.6e-52 211.1 349 38.7
Ah.13g071610 Amaranthus hybridus HOM05D005574 ORTHO05D007102 2.1e-52 210.7 349 37.0
Glyma.10G247300 Glycine max HOM05D005574 ORTHO05D007102 2.7e-52 210.3 360 36.1
Sopen09g031060 Solanum pennellii HOM05D005574 ORTHO05D007102 2.7e-52 210.3 342 36.3
Dinv44545 Davidia involucrata HOM05D005574 ORTHO05D007102 3.5e-52 209.9 355 39.2
Peaxi162Scf00092g00614 Petunia axillaris HOM05D005574 ORTHO05D007102 3.5e-52 209.9 334 36.2
MD16G1195700 Malus domestica HOM05D005574 ORTHO05D007102 1.3e-51 208.0 349 38.7
Hma1.2p1_0602F.1_g187410 Hydrangea macrophylla HOM05D005574 ORTHO05D007102 3.9e-51 206.5 332 38.6
Hund12118 Selenicereus undatus HOM05D005574 ORTHO05D007102 3.9e-51 206.5 340 38.5
FAN07G2976 Fragaria x ananassa HOM05D005574 ORTHO05D007102 5.1e-51 206.1 350 38.3
Duzib151G0572 Durio zibethinus HOM05D005574 ORTHO05D007102 8.6e-51 205.3 211 48.3
TAR362G0087 Trochodendron aralioides HOM05D005574 ORTHO05D007102 8.6e-51 205.3 326 41.7
AUR62033680 Chenopodium quinoa HOM05D005574 ORTHO05D007102 1.1e-50 204.9 294 41.5
C01p35960 Brassica napus HOM05D005574 ORTHO05D007102 1.9e-50 204.1 177 55.9
Nitab4.5_0001920g0060 Nicotiana tabacum HOM05D005574 ORTHO05D007102 1.9e-50 204.1 329 37.4
Glyma.20G147200 Glycine max HOM05D005574 ORTHO05D007102 2.5e-50 203.8 330 37.0
CSS0019466 Camellia sinensis var. sinensis HOM05D005574 ORTHO05D007102 3.3e-50 203.4 372 36.6
TPR.G5479 Trifolium pratense HOM05D005574 ORTHO05D007102 3.3e-50 203.4 353 36.0
Psat6g206920 Pisum sativum HOM05D005574 ORTHO05D007102 4.3e-50 203.0 353 36.3
Nitab4.5_0004135g0020 Nicotiana tabacum HOM05D005574 ORTHO05D007102 5.6e-50 202.6 331 36.6
FvH4_4g16270 Fragaria vesca HOM05D005574 ORTHO05D007102 7.3e-50 202.2 383 36.3
FAN02G2947 Fragaria x ananassa HOM05D005574 ORTHO05D007102 7.3e-50 202.2 350 37.7
MD13G1194900 Malus domestica HOM05D005574 ORTHO05D007102 1.6e-49 201.1 349 37.8
FAN12G2145 Fragaria x ananassa HOM05D005574 ORTHO05D007102 2.1e-49 200.7 387 34.6
FAN12G2997 Fragaria x ananassa HOM05D005574 ORTHO05D007102 2.1e-49 200.7 387 34.6
Rhsim04G0201500 Rhododendron simsii HOM05D005574 ORTHO05D007102 2.1e-49 200.7 374 37.2
FAN12G0525 Fragaria x ananassa HOM05D005574 ORTHO05D007102 2.8e-49 200.3 350 36.6
Medtr1g103560 Medicago truncatula HOM05D005574 ORTHO05D007102 2.8e-49 200.3 325 36.6
EL10Ac3g06494 Beta vulgaris HOM05D005574 ORTHO05D007102 4.7e-49 199.5 324 37.3
arahy.Tifrunner.gnm1.ann1.R5YE9W Arachis hypogaea HOM05D005574 ORTHO05D007102 8.1e-49 198.7 343 35.0
Ca_10888_v3 Cicer arietinum L. HOM05D005574 ORTHO05D007102 8.1e-49 198.7 331 37.5
Manes.03G177100 Manihot esculenta HOM05D005574 ORTHO05D007102 1.4e-48 198.0 339 38.9
arahy.Tifrunner.gnm1.ann1.PUQJ4X Arachis hypogaea HOM05D005574 ORTHO05D007102 1.8e-48 197.6 346 34.7
Actinidia23520 Actinidia chinensis HOM05D005574 ORTHO05D007102 5.2e-48 196.1 329 38.3
PSO210G4004 Papaver somniferum HOM05D005574 ORTHO05D007102 5.2e-48 196.1 336 36.3
Cc03_g03930 Coffea canephora HOM05D005574 ORTHO05D007102 1.5e-47 194.5 336 38.1
SalBow2G1029 Salvia bowleyana HOM05D005574 ORTHO05D007102 4.9e-46 189.5 382 33.0
Aqoxy2G03411 Aquilegia oxysepala HOM05D005574 ORTHO05D007102 3.2e-45 186.8 332 34.9
Lj5g0023935 Lotus japonicus HOM05D005574 ORTHO05D007102 4.2e-45 186.4 331 35.3
MSTRG.4036 Avicennia marina HOM05D005574 ORTHO05D007102 9.2e-45 185.3 352 33.5
Oeu058969.1 Olea europaea HOM05D005574 ORTHO05D007102 1.6e-44 184.5 336 36.3
Eucgr.B01081 Eucalyptus grandis HOM05D005574 ORTHO05D007102 1.0e-43 181.8 294 36.7
Migut.G00347 Erythranthe guttata HOM05D005574 ORTHO05D007102 1.7e-43 181.0 348 36.8
Lalb_Chr02g0140631 Lupinus albus HOM05D005574 ORTHO05D007102 2.3e-43 180.6 327 33.0
CAN.G2204.4 Capsicum annuum HOM05D005574 ORTHO05D007102 1.9e-42 177.6 169 48.5
Dinv14005 Davidia involucrata HOM05D005574 ORTHO05D007102 1.2e-41 174.9 337 36.8
CAN.G2204.2 Capsicum annuum HOM05D000340 ORTHO05D007102 6.2e-41 172.6 205 42.0
Lsat_1_v5_gn_5_104360 Lactuca sativa HOM05D005574 ORTHO05D007102 1.1e-40 171.8 328 34.8
PSO761G0453 Papaver somniferum HOM05D005574 ORTHO05D007102 1.1e-40 171.8 356 33.1
MSTRG.9977 Avicennia marina HOM05D005574 ORTHO05D007102 3.1e-40 170.2 319 33.9
Potri.008G154400 Populus trichocarpa HOM05D005574 ORTHO05D007102 4.0e-40 169.9 248 42.3
CDE07G0532 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 2.6e-39 167.2 311 35.7
SGA_v2.0_scaffold257G45710 Striga asiatica HOM05D005574 ORTHO05D007102 3.4e-39 166.8 325 33.2
BcaB07g33702 Brassica carinata HOM05D005574 ORTHO05D007102 9.9e-39 165.2 200 47.5
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 2.2e-38 164.1 312 34.3
MBI15_g31435_MAGBIO Magnolia biondii HOM05D005574 ORTHO05D007102 2.1e-36 157.5 196 42.9
HanXRQChr10g0294751 Helianthus annuus HOM05D005574 ORTHO05D007102 3.0e-35 153.7 340 34.1
C03p05690 Brassica napus HOM05D005574 ORTHO05D022054 1.1e-34 151.8 122 59.0
A09p67440 Brassica napus HOM05D005574 ORTHO05D007102 4.3e-34 149.8 102 71.6
BcaC07g42131 Brassica carinata HOM05D005574 ORTHO05D007102 1.6e-33 147.9 112 65.2
C08p51720 Brassica napus HOM05D005574 ORTHO05D007102 1.6e-33 147.9 112 65.2
ECA234G0493 Erigeron canadensis HOM05D005574 ORTHO05D007102 8.1e-33 145.6 334 32.3
BcaC09g49493 Brassica carinata HOM05D005574 ORTHO05D007102 4.0e-32 143.3 166 48.8
BolC1t03554H Brassica oleracea HOM05D005574 ORTHO05D022054 3.4e-31 140.2 114 58.8
Cpa.g.sc58.90 Carica papaya HOM05D005574 ORTHO05D007102 2.9e-30 137.1 132 50.0
ATR0697G187 Amborella trichopoda HOM05D005574 ORTHO05D007102 3.8e-30 136.7 307 32.6
SEGI_38250 Sequoiadendron giganteum HOM05D005574 ORTHO05D007102 3.8e-30 136.7 191 36.6
BolC3t13081H Brassica oleracea HOM05D005574 ORTHO05D007102 6.4e-30 136.0 122 58.2
C01p45800 Brassica napus HOM05D005574 ORTHO05D007102 1.4e-29 134.8 175 42.3
A03p47670 Brassica napus HOM05D005574 ORTHO05D007102 2.4e-29 134.0 119 58.0
BraA09t37853Z Brassica rapa HOM05D005574 ORTHO05D007102 2.4e-29 134.0 119 58.0
A02p27770 Brassica napus HOM05D005574 ORTHO05D007102 3.2e-29 133.7 119 59.7
BraA02t07818Z Brassica rapa HOM05D005574 ORTHO05D007102 3.2e-29 133.7 119 59.7
BraA07t27929Z Brassica rapa HOM05D005574 ORTHO05D007102 7.1e-29 132.5 119 58.8
BraA09t41109Z Brassica rapa HOM05D005574 ORTHO05D007102 9.3e-29 132.1 119 58.8
Actinidia40140 Actinidia chinensis HOM05D005574 ORTHO05D007102 1.6e-28 131.3 139 49.6
HPP92_009613 Vanilla planifolia HOM05D005574 ORTHO05D007102 2.7e-28 130.6 337 31.2
ECA234G4095 Erigeron canadensis HOM05D005574 ORTHO05D007102 2.5e-26 124.0 184 40.2
PGR142G0953 Punica granatum HOM05D005574 ORTHO05D007102 5.6e-26 122.9 338 28.1
CDE06G2673 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 1.6e-25 121.3 251 33.5
BcaC09g48798 Brassica carinata HOM05D005574 ORTHO05D007102 1.4e-24 118.2 99 57.6
SMO174G0025 Selaginella moellendorffii HOM05D005574 ORTHO05D007102 1.4e-24 118.2 164 34.1
Zm00001eb057090 Zea mays HOM05D005574 ORTHO05D007102 3.2e-21 107.1 221 31.2
A09p57160 Brassica napus HOM05D005574 ORTHO05D007102 9.3e-21 105.5 83 65.1
BcaC07g42130 Brassica carinata HOM05D005574 ORTHO05D007102 2.7e-20 104.0 112 51.8
AagrBONN_evm.TU.Sc2ySwM_117.3111 Anthoceros agrestis HOM05D005574 ORTHO05D007102 6.0e-20 102.8 140 34.3
Os03g0747100 Oryza sativa ssp. japonica HOM05D005574 ORTHO05D007102 1.6e-17 94.7 320 28.4
unitig_32.g11728 Utricularia gibba HOM05D005574 ORTHO05D007102 3.4e-15 87.0 370 27.0
C09p41690 Brassica napus HOM05D005574 ORTHO05D022054 4.8e-09 66.6 59 52.5
Sabra08G0117800 Salix brachista HOM05D000633 ORTHO05D000477 7.7e-07 59.3 82 39.0


User provided reference genes

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