Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G04530 Arabidopsis thaliana HOM05D006910 ORTHO05D008937 2.1e-148 529.3 311 100.0
AL1G14180 Arabidopsis lyrata HOM05D006910 ORTHO05D008937 2.4e-136 489.2 315 82.2
Carub.0001s0374 Capsella rubella HOM05D006910 ORTHO05D008937 4.5e-119 431.8 315 71.1
CARHR003870 Cardamine hirsuta HOM05D006910 ORTHO05D008937 2.5e-117 426.0 318 70.8
Thhalv10008199m.g Eutrema salsugineum HOM05D006910 ORTHO05D008937 7.1e-117 424.5 327 70.6
Sp1g03360 Schrenkiella parvula HOM05D006910 ORTHO05D008937 2.3e-115 419.5 314 67.8
A10p02950 Brassica napus HOM05D006910 ORTHO05D008937 2.2e-105 386.3 311 65.3
BolC5t29051H Brassica oleracea HOM05D006910 ORTHO05D008937 2.6e-103 379.4 312 63.8
BraA10t42564Z Brassica rapa HOM05D006910 ORTHO05D008937 1.7e-102 376.7 311 63.7
Aa31LG1G20340 Aethionema arabicum HOM05D006910 ORTHO05D008937 2.3e-99 366.3 317 74.4
C05p02700 Brassica napus HOM05D006910 ORTHO05D008937 6.7e-99 364.8 312 62.2
THA.LOC104801064 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 3.0e-75 286.2 366 44.3
THA.LOC104826095 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 1.5e-74 283.9 382 50.5
C08p52150 Brassica napus HOM05D006910 ORTHO05D008937 4.4e-50 202.6 179 62.0
BolC8t52749H Brassica oleracea HOM05D006910 ORTHO05D008937 1.1e-48 198.0 179 60.9
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 1.2e-34 151.4 201 43.3
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 2.9e-33 146.7 205 43.4
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 1.6e-31 141.0 318 38.1
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 2.3e-30 137.1 321 35.2
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 2.5e-29 133.7 201 41.8
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 5.6e-29 132.5 203 42.9
FAN12G3461 Fragaria x ananassa HOM05D006910 ORTHO05D008937 1.6e-28 131.0 319 30.7
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 4.8e-28 129.4 202 42.1
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 6.2e-28 129.0 204 38.7
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 6.2e-28 129.0 204 41.2
Potri.010G065400 Populus trichocarpa HOM05D006910 ORTHO05D008937 1.1e-27 128.3 213 37.6
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 3.1e-27 126.7 197 40.1
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 3.1e-27 126.7 201 39.3
Ah.13g074730 Amaranthus hybridus HOM05D006910 ORTHO05D008937 6.9e-27 125.6 193 41.5
FAN17G1396 Fragaria x ananassa HOM05D006910 ORTHO05D008937 6.9e-27 125.6 197 40.6
AUR62015241 Chenopodium quinoa HOM05D006910 ORTHO05D008937 9.0e-27 125.2 197 43.7
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 9.0e-27 125.2 204 42.2
Glyma.20G199800 Glycine max HOM05D006910 ORTHO05D008937 1.2e-26 124.8 196 38.8
Hund20492 Selenicereus undatus HOM05D006910 ORTHO05D008937 3.4e-26 123.2 315 35.6
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 5.8e-26 122.5 196 39.8
Phvul.011G133545 Phaseolus vulgaris HOM05D006910 ORTHO05D008937 7.6e-26 122.1 296 36.1
FvH4_4g04670 Fragaria vesca HOM05D006910 ORTHO05D008937 9.9e-26 121.7 193 38.9
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 1.7e-25 120.9 204 38.2
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 2.2e-25 120.6 201 37.3
Lj5g0027299 Lotus japonicus HOM05D006910 ORTHO05D008937 2.9e-25 120.2 203 36.5
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 4.9e-25 119.4 192 41.1
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 6.4e-25 119.0 167 41.3
RcHm_v2.0_Chr4g0395481 Rosa chinensis HOM05D006910 ORTHO05D008937 6.4e-25 119.0 196 39.3
Sc13g0003110 Simmondsia chinensis HOM05D006910 ORTHO05D008937 8.4e-25 118.6 167 42.5
VMungo0720G1174 Vigna mungo HOM05D006910 ORTHO05D008937 8.4e-25 118.6 197 39.1
PGR031G1691 Punica granatum HOM05D006910 ORTHO05D008937 1.1e-24 118.2 202 36.6
PGR031G1888 Punica granatum HOM05D006910 ORTHO05D008937 1.1e-24 118.2 202 36.6
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 1.4e-24 117.9 183 42.6
EL10Ac3g06675 Beta vulgaris HOM05D006910 ORTHO05D008937 2.4e-24 117.1 195 38.5
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 3.2e-24 116.7 178 43.3
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 1.2e-23 114.8 197 39.1
CAN.G638.37 Capsicum annuum HOM05D006910 ORTHO05D008937 2.7e-23 113.6 214 37.4
Medtr1g073230 Medicago truncatula HOM05D006910 ORTHO05D008937 7.9e-23 112.1 195 35.4
Psat6g131280 Pisum sativum HOM05D006910 ORTHO05D008937 1.0e-22 111.7 169 38.5
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 1.7e-22 110.9 183 38.3
Lalb_Chr06g0169541 Lupinus albus HOM05D006910 ORTHO05D008937 2.3e-22 110.5 246 37.0
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 2.3e-22 110.5 196 37.2
Glyma.10G190700 Glycine max HOM05D006910 ORTHO05D008937 3.9e-22 109.8 191 36.1
Nitab4.5_0000592g0430 Nicotiana tabacum HOM05D006910 ORTHO05D008937 3.9e-22 109.8 200 35.5
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 6.6e-22 109.0 185 40.5
ClCG05G003960 Citrullus lanatus HOM05D006910 ORTHO05D008937 8.7e-22 108.6 323 31.0
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 1.1e-21 108.2 216 35.2
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 1.9e-21 107.5 227 37.4
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 1.9e-21 107.5 178 41.6
PGSC0003DMG400001551 Solanum tuberosum HOM05D006910 ORTHO05D008937 2.5e-21 107.1 200 38.0
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 7.3e-21 105.5 134 41.0
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 9.6e-21 105.1 206 35.0
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 1.6e-20 104.4 222 34.2
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 2.1e-20 104.0 210 36.2
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 2.8e-20 103.6 198 36.9
Solyc09g090930.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 2.8e-20 103.6 201 37.3
Sopen09g033910 Solanum pennellii HOM05D006910 ORTHO05D008937 4.8e-20 102.8 201 37.8
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 8.1e-20 102.1 192 38.0
arahy.Tifrunner.gnm1.ann1.DX8ZNF Arachis hypogaea HOM05D006910 ORTHO05D008937 2.4e-19 100.5 206 35.0
CAN.G524.13 Capsicum annuum HOM05D006910 ORTHO05D008937 2.4e-19 100.5 202 38.1
arahy.Tifrunner.gnm1.ann1.YFRU1Z Arachis hypogaea HOM05D006910 ORTHO05D008937 3.1e-19 100.1 206 35.4
TWI53G1612 Tripterygium wilfordii HOM05D006910 ORTHO05D008937 3.1e-19 100.1 200 35.0
CsaV3_3G011640 Cucumis sativus L. HOM05D006910 ORTHO05D008937 5.3e-19 99.4 317 29.7
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 9.0e-19 98.6 200 37.5
Eucgr.H00126 Eucalyptus grandis HOM05D006910 ORTHO05D008937 1.2e-18 98.2 107 42.1
Nitab4.5_0002210g0060 Nicotiana tabacum HOM05D006910 ORTHO05D008937 7.6e-18 95.5 362 25.4
Lsat_1_v5_gn_6_66101 Lactuca sativa HOM05D006910 ORTHO05D008937 2.9e-17 93.6 188 34.6
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 3.8e-17 93.2 207 33.8
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 6.4e-17 92.4 173 32.9
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.4e-16 91.3 113 43.4
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 3.2e-16 90.1 184 42.9
MELO3C006372.2 Cucumis melo HOM05D006910 ORTHO05D008937 3.2e-16 90.1 323 31.9
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 1.2e-15 88.2 124 38.7
SGA_v2.0_scaffold67G22680 Striga asiatica HOM05D006910 ORTHO05D008937 7.9e-15 85.5 192 31.2
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 1.8e-14 84.3 202 34.2
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 3.0e-14 83.6 201 32.3
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 7.4e-13 79.0 110 38.2
Sed0015418 Sechium edule HOM05D006910 ORTHO05D008937 7.4e-13 79.0 197 33.0
Lsat_1_v5_gn_1_75580 Lactuca sativa HOM05D006910 ORTHO05D008937 1.6e-12 77.8 183 34.4
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 2.1e-12 77.4 93 40.9
HanXRQChr01g0023021 Helianthus annuus HOM05D006910 ORTHO05D008937 3.7e-12 76.6 71 46.5
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 1.8e-11 74.3 156 35.3
Ca_09799_v3 Cicer arietinum L. HOM05D006910 ORTHO05D008937 6.9e-11 72.4 166 29.5
ECA248G3309 Erigeron canadensis HOM05D006910 ORTHO05D008937 6.9e-11 72.4 66 47.0
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 1.2e-10 71.6 168 33.9
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 3.4e-10 70.1 162 31.5
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 3.4e-10 70.1 182 36.8
TPR.G18548 Trifolium pratense HOM05D006910 ORTHO05D008937 4.5e-10 69.7 162 32.1
Rhsim02G0044100 Rhododendron simsii HOM05D006910 ORTHO05D008937 5.8e-10 69.3 140 31.4
Duzib150G1231 Durio zibethinus HOM05D001903 ORTHO05D001847 1.7e-09 67.8 79 45.6
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 1.7e-09 67.8 77 45.5
Aa31LG4G420 Aethionema arabicum HOM05D001903 ORTHO05D001847 3.8e-09 66.6 129 32.6
AL2G41400 Arabidopsis lyrata HOM05D001903 ORTHO05D001847 3.8e-09 66.6 101 35.6
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 3.8e-09 66.6 176 36.9
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 4.9e-09 66.2 151 34.4
AT1G80130 Arabidopsis thaliana HOM05D001903 ORTHO05D001847 6.5e-09 65.9 101 34.7
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 8.4e-09 65.5 179 33.0
unitig_748.g8295 Utricularia gibba HOM05D006910 ORTHO05D008937 1.9e-08 64.3 96 36.5
A01p06030 Brassica napus HOM05D001903 ORTHO05D001847 4.2e-08 63.2 101 37.6
BraA01t00568Z Brassica rapa HOM05D001903 ORTHO05D001847 4.2e-08 63.2 101 37.6
Sabra06G0198700 Salix brachista HOM05D001903 ORTHO05D001847 5.5e-08 62.8 109 33.0
MBI10_g26041_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 7.1e-08 62.4 157 33.8
ATR0787G077 Amborella trichopoda HOM05D007706 ORTHO05D009593 9.3e-08 62.0 147 35.4
BolC1t00658H Brassica oleracea HOM05D001903 ORTHO05D001847 9.3e-08 62.0 102 36.3
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 9.3e-08 62.0 128 38.3
Peaxi162Scf01044g00225 Petunia axillaris HOM05D006910 ORTHO05D008937 9.3e-08 62.0 77 49.4
PGR044G1481 Punica granatum HOM05D001903 ORTHO05D001847 9.3e-08 62.0 112 31.2
AUR62012392 Chenopodium quinoa HOM05D001903 ORTHO05D001847 1.2e-07 61.6 92 38.0
Potri.006G254300 Populus trichocarpa HOM05D001903 ORTHO05D001847 1.2e-07 61.6 108 33.3
BcaC09g52017 Brassica carinata HOM05D001903 ORTHO05D001847 2.1e-07 60.8 96 38.5
PGR044G1754 Punica granatum HOM05D001903 ORTHO05D001847 2.1e-07 60.8 112 30.4
Thhalv10026052m.g Eutrema salsugineum HOM05D001903 ORTHO05D001847 2.7e-07 60.5 96 38.5
CDE05G1228 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 3.5e-07 60.1 173 31.8
Os04g0496700 Oryza sativa ssp. japonica HOM05D001903 ORTHO05D001847 4.6e-07 59.7 63 46.0
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 4.6e-07 59.7 167 31.7
C01p06630 Brassica napus HOM05D001903 ORTHO05D001847 6.0e-07 59.3 96 38.5
MBI02_g19811_MAGBIO Magnolia biondii HOM05D006910 ORTHO05D025782 6.0e-07 59.3 152 31.6
Sp7g30100 Schrenkiella parvula HOM05D001903 ORTHO05D001847 7.9e-07 58.9 96 37.5
Hma1.2p1_0366F.1_g136940 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 1.0e-06 58.5 181 26.0
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 1.3e-06 58.2 120 30.8
Aa31LG2G18260 Aethionema arabicum HOM05D001903 ORTHO05D001847 2.3e-06 57.4 75 42.7
THA.LOC104810716 Tarenaya hassleriana HOM05D001986 ORTHO05D002283 2.3e-06 57.4 119 34.5
FAN27G2030 Fragaria x ananassa HOM05D007706 ORTHO05D009593 3.0e-06 57.0 129 38.8
BcaC03g16002 Brassica carinata HOM05D001903 ORTHO05D001847 6.7e-06 55.8 158 29.1
AUR62018038 Chenopodium quinoa HOM05D006910 ORTHO05D008937 6.7e-06 55.8 42 54.8
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 6.7e-06 55.8 74 43.2
Hund26517 Selenicereus undatus HOM05D001903 ORTHO05D001847 6.7e-06 55.8 67 40.3
CDE11G0528 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 8.7e-06 55.5 143 33.6


User provided reference genes

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