Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 0.0e+00 1198.7 631 100.0
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 0.0e+00 1115.1 614 95.8
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 0.0e+00 1102.8 614 92.7
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 0.0e+00 1093.6 614 94.0
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 0.0e+00 1084.3 615 93.3
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 0.0e+00 1082.4 615 91.2
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 1.5e-302 1042.3 618 88.5
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 7.3e-302 1040.0 618 88.3
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 9.5e-302 1039.6 618 88.3
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 4.0e-300 1034.2 617 88.3
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 1.3e-295 1019.2 621 86.8
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 8.1e-293 1010.0 615 85.9
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 8.4e-290 1000.0 635 84.1
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 3.6e-277 958.0 615 81.3
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 3.8e-274 948.0 631 81.8
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 2.7e-272 941.8 632 81.5
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.8e-244 849.4 617 73.6
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 9.1e-244 847.0 600 78.3
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 1.0e-242 843.6 616 71.3
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 1.7e-242 842.8 617 72.8
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 1.1e-241 840.1 616 71.8
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 3.2e-241 838.6 617 72.1
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 1.2e-240 836.6 617 72.1
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 2.3e-239 832.4 618 70.4
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 6.7e-239 830.9 616 71.3
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 8.8e-239 830.5 616 70.5
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 1.3e-237 826.6 645 69.3
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 1.1e-236 823.5 616 70.6
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 2.6e-235 818.9 615 70.9
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 8.8e-231 803.9 618 69.1
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 4.4e-230 801.6 616 69.3
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 4.4e-230 801.6 617 69.5
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 1.7e-229 799.7 617 68.4
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 6.3e-229 797.7 620 68.9
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 8.2e-229 797.3 617 69.2
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 5.3e-228 794.7 618 68.0
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 9.1e-228 793.9 622 67.7
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 1.0e-226 790.4 619 67.4
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.7e-226 789.6 618 67.5
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 3.8e-226 788.5 618 67.2
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 4.2e-225 785.0 619 67.9
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 4.2e-225 785.0 621 67.0
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 9.4e-225 783.9 620 68.1
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 6.1e-224 781.2 616 67.5
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 8.0e-224 780.8 617 66.9
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 1.4e-223 780.0 619 67.5
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 1.2e-222 776.9 617 67.4
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 2.0e-222 776.2 619 67.9
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 9.7e-222 773.9 622 66.4
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 2.2e-221 772.7 615 66.7
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 5.3e-220 768.1 617 67.4
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 7.7e-219 764.2 615 66.3
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 3.8e-218 761.9 616 65.6
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 6.5e-218 761.1 646 64.1
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 8.5e-218 760.8 652 64.4
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 1.1e-217 760.4 641 65.2
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 1.9e-217 759.6 615 66.0
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 1.0e-215 753.8 617 65.3
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 2.0e-214 749.6 619 63.8
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 3.4e-214 748.8 617 64.8
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 1.4e-212 743.4 619 64.9
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 3.1e-212 742.3 617 64.2
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 5.4e-212 741.5 620 65.5
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 5.4e-212 741.5 616 64.1
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 1.2e-211 740.3 616 63.8
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 2.0e-211 739.6 617 64.0
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 2.7e-211 739.2 616 63.5
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 4.5e-211 738.4 615 63.7
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 5.9e-211 738.0 562 70.8
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 7.7e-211 737.6 624 63.8
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 7.7e-211 737.6 697 59.3
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 7.7e-211 737.6 624 63.9
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 1.0e-210 737.3 616 64.8
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 1.3e-210 736.9 616 64.9
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 1.7e-210 736.5 617 63.4
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 2.3e-210 736.1 617 64.2
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 2.9e-210 735.7 624 64.3
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 5.0e-210 734.9 616 64.8
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 6.6e-210 734.6 616 63.8
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 8.6e-210 734.2 616 63.0
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 1.9e-209 733.0 630 63.7
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 3.3e-209 732.3 615 63.1
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 4.2e-209 731.9 617 63.9
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 9.5e-209 730.7 621 63.8
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 9.5e-209 730.7 621 64.1
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 9.5e-209 730.7 616 63.1
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 2.1e-208 729.6 619 62.8
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 1.0e-207 727.2 616 63.3
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 2.3e-207 726.1 624 63.0
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 8.9e-207 724.2 620 64.0
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 2.4e-204 716.1 616 63.6
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 3.5e-203 712.2 617 62.2
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 4.5e-203 711.8 620 62.6
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 4.5e-203 711.8 615 61.6
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 5.9e-203 711.4 616 62.2
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 9.5e-201 704.1 622 60.8
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 1.2e-200 703.7 617 60.6
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 1.7e-197 693.3 617 60.6
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 1.7e-197 693.3 616 61.0
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 2.9e-197 692.6 616 61.5
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 1.4e-196 690.3 624 59.8
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 2.4e-196 689.5 617 60.3
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 6.0e-195 684.9 617 60.3
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 5.6e-193 678.3 622 59.3
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 3.1e-191 672.5 617 59.6
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 4.9e-189 665.2 617 60.6
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 6.4e-189 664.8 618 59.7
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 3.2e-188 662.5 623 57.1
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 1.6e-187 660.2 551 65.0
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 1.6e-187 660.2 617 58.5
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.0e-186 657.5 620 58.7
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 6.6e-186 654.8 616 58.1
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 5.6e-185 651.7 618 58.9
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 7.3e-185 651.4 623 56.8
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 9.5e-185 651.0 592 60.8
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 6.2e-176 621.7 603 55.9
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 2.8e-168 596.3 465 70.1
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 3.4e-166 589.3 616 54.1
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.1e-161 574.3 488 65.2
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 2.8e-160 569.7 615 51.7
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 4.8e-160 568.9 620 54.0
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 2.6e-158 563.1 561 58.1
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 6.0e-155 552.0 481 64.4
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 9.9e-150 534.6 465 65.4
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 2.9e-149 533.1 522 58.8
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 3.0e-146 523.1 627 49.0
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 1.3e-138 497.7 569 51.5
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 1.8e-138 497.3 616 48.7
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 1.9e-132 477.2 324 78.7
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 2.5e-132 476.9 628 46.0
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 8.8e-130 468.4 405 61.7
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 6.8e-106 389.0 468 50.0
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 5.5e-100 369.4 788 35.7
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 8.3e-96 355.5 247 74.1
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 1.9e-92 344.4 290 66.2
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 2.4e-87 327.4 355 56.3
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 1.2e-83 315.1 372 48.9
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 1.1e-71 275.4 363 50.7
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 7.8e-70 269.2 327 51.7
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 9.6e-60 235.7 174 70.7
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 6.8e-58 229.6 171 69.6
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 3.3e-52 210.7 131 80.9
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 2.2e-48 198.0 125 80.0
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 8.4e-40 169.5 123 72.4
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 3.7e-35 154.1 139 59.7
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 1.1e-34 152.5 420 31.9
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 9.6e-28 129.4 178 43.3
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 5.1e-21 107.1 91 60.4
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 3.1e-18 97.8 115 50.4
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 2.9e-16 91.3 84 56.0
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 6.5e-16 90.1 66 74.2
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 1.1e-12 79.3 83 55.4
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 1.3e-11 75.9 87 44.8
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 4.1e-10 70.9 58 63.8
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 2.0e-09 68.6 85 43.5
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 1.0e-08 66.2 71 50.7
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 8.5e-08 63.2 32 81.2
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.9e-07 62.0 37 81.1
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 4.2e-07 60.8 58 55.2


User provided reference genes

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