Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G04190 Arabidopsis thaliana HOM05D006451 ORTHO05D007680 1.2e-154 550.1 329 100.0
AL1G13790 Arabidopsis lyrata HOM05D006451 ORTHO05D007680 1.3e-148 530.0 329 97.3
Carub.0001s0338 Capsella rubella HOM05D006451 ORTHO05D007680 2.7e-146 522.3 329 95.1
CARHR003520 Cardamine hirsuta HOM05D006451 ORTHO05D007680 3.0e-142 508.8 329 93.3
Sp1g03010 Schrenkiella parvula HOM05D006451 ORTHO05D007680 4.1e-139 498.4 327 92.4
Thhalv10008141m.g Eutrema salsugineum HOM05D006451 ORTHO05D007680 1.2e-138 496.9 328 91.5
Aa31LG1G20650 Aethionema arabicum HOM05D006451 ORTHO05D007680 4.3e-136 488.4 326 90.5
A08p37070 Brassica napus HOM05D006451 ORTHO05D007680 1.4e-134 483.4 332 77.7
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 3.1e-134 482.3 326 78.2
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 3.1e-134 482.3 326 78.2
BcaC07g42200 Brassica carinata HOM05D006451 ORTHO05D007680 5.2e-134 481.5 330 77.6
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 5.2e-134 481.5 326 78.5
BraA08t35607Z Brassica rapa HOM05D006451 ORTHO05D007680 7.5e-133 477.6 327 77.7
THA.LOC104826059 Tarenaya hassleriana HOM05D006451 ORTHO05D007680 1.4e-126 456.8 328 71.6
THA.LOC104801113 Tarenaya hassleriana HOM05D006451 ORTHO05D007680 5.2e-126 454.9 332 84.0
COL.COLO4_21546 Corchorus olitorius HOM05D006451 ORTHO05D007680 1.7e-121 439.9 324 69.1
Manes.15G032000 Manihot esculenta HOM05D006451 ORTHO05D007680 2.5e-120 436.0 320 70.9
Thecc.04G237100 Theobroma cacao HOM05D006451 ORTHO05D007680 4.7e-119 431.8 319 69.6
Atru.chr4.2375 Acer truncatum HOM05D006451 ORTHO05D007680 6.2e-119 431.4 316 69.0
Atru.chr4.2399 Acer truncatum HOM05D006451 ORTHO05D007680 8.9e-118 427.6 316 68.4
CiPaw.01G196900 Carya illinoinensis HOM05D006451 ORTHO05D007680 8.9e-118 427.6 308 69.8
Gohir.A01G023900 Gossypium hirsutum HOM05D006451 ORTHO05D007680 1.5e-117 426.8 328 67.7
Potri.008G156500 Populus trichocarpa HOM05D006451 ORTHO05D007680 1.5e-117 426.8 330 67.6
Duzib052G1229 Durio zibethinus HOM05D006451 ORTHO05D007680 2.0e-117 426.4 328 66.5
Potri.010G082900 Populus trichocarpa HOM05D006451 ORTHO05D007680 2.6e-117 426.0 330 67.0
Gorai.002G024400 Gossypium raimondii HOM05D006451 ORTHO05D007680 3.4e-117 425.6 328 67.7
Gohir.D01G021900 Gossypium hirsutum HOM05D006451 ORTHO05D007680 7.6e-117 424.5 328 67.4
Manes.03G174100 Manihot esculenta HOM05D006451 ORTHO05D007680 1.3e-116 423.7 328 67.4
Sabra10G0060200 Salix brachista HOM05D006451 ORTHO05D007680 2.9e-116 422.5 331 66.2
GSVIVG01018026001 Vitis vinifera HOM05D006451 ORTHO05D007680 3.8e-116 422.2 325 67.7
TWI09G1365 Tripterygium wilfordii HOM05D006451 ORTHO05D007680 6.4e-116 421.4 321 68.2
CANSAT78G2142 Cannabis sativa HOM05D006451 ORTHO05D007680 7.1e-115 417.9 319 66.8
QL06p001354 Quercus lobata HOM05D006451 ORTHO05D007680 7.1e-115 417.9 309 67.6
Ciclev10005444m.g Citrus clementina HOM05D006451 ORTHO05D007680 4.6e-114 415.2 315 66.3
Glyma.02G004400 Glycine max HOM05D006451 ORTHO05D007680 1.3e-113 413.7 319 66.1
Ca_12151_v3 Cicer arietinum L. HOM05D006451 ORTHO05D007680 1.7e-113 413.3 319 66.1
Solyc09g082540.3 Solanum lycopersicum HOM05D006451 ORTHO05D007680 1.7e-113 413.3 312 67.9
Duzib151G0283 Durio zibethinus HOM05D006451 ORTHO05D007680 3.0e-113 412.5 328 65.5
Sopen09g031400 Solanum pennellii HOM05D006451 ORTHO05D007680 3.9e-113 412.1 312 67.6
Prupe.1G019800 Prunus persica HOM05D006451 ORTHO05D007680 5.1e-113 411.8 322 65.2
Cc03_g04170 Coffea canephora HOM05D006451 ORTHO05D007680 8.7e-113 411.0 309 67.6
TAR362G1293 Trochodendron aralioides HOM05D006451 ORTHO05D007680 1.1e-112 410.6 328 63.7
PGSC0003DMG402007686 Solanum tuberosum HOM05D006451 ORTHO05D007680 1.5e-112 410.2 310 67.4
CSS0023735 Camellia sinensis var. sinensis HOM05D006451 ORTHO05D007680 3.3e-112 409.1 316 65.8
Sabra08G0119100 Salix brachista HOM05D006451 ORTHO05D007680 4.3e-112 408.7 330 65.5
Lj6g0024617 Lotus japonicus HOM05D006451 ORTHO05D007680 5.6e-112 408.3 312 66.7
MD13G1198100 Malus domestica HOM05D006451 ORTHO05D007680 5.6e-112 408.3 320 65.6
CsaV3_2G013500 Cucumis sativus L. HOM05D006451 ORTHO05D007680 7.3e-112 407.9 332 64.2
Oeu058962.1 Olea europaea HOM05D006451 ORTHO05D007680 7.3e-112 407.9 308 66.9
CAN.G1402.12 Capsicum annuum HOM05D006451 ORTHO05D007680 2.1e-111 406.4 309 66.7
Glyma.10G003800 Glycine max HOM05D006451 ORTHO05D007680 2.1e-111 406.4 316 65.5
Aqoxy2G03443 Aquilegia oxysepala HOM05D006451 ORTHO05D007680 2.8e-111 406.0 323 64.1
MD16G1198200 Malus domestica HOM05D006451 ORTHO05D007680 2.8e-111 406.0 309 66.7
Phvul.007G277400 Phaseolus vulgaris HOM05D006451 ORTHO05D007680 8.1e-111 404.4 319 65.2
Actinidia08470 Actinidia chinensis HOM05D006451 ORTHO05D007680 1.4e-110 403.7 310 65.2
Psat6g104120 Pisum sativum HOM05D006451 ORTHO05D007680 1.4e-110 403.7 319 64.3
Medtr1g041435 Medicago truncatula HOM05D006451 ORTHO05D007680 5.2e-110 401.7 319 64.3
FvH4_4g00880 Fragaria vesca HOM05D006451 ORTHO05D007680 6.9e-110 401.4 329 63.8
PGR004G2173 Punica granatum HOM05D006451 ORTHO05D007680 9.0e-110 401.0 309 67.3
Sed0026394 Sechium edule HOM05D006451 ORTHO05D007680 9.0e-110 401.0 325 63.7
Sc25g0004270 Simmondsia chinensis HOM05D006451 ORTHO05D007680 9.0e-110 401.0 315 63.2
MELO3C014291.2 Cucumis melo HOM05D006451 ORTHO05D007680 1.2e-109 400.6 332 63.0
Lalb_Chr01g0020941 Lupinus albus HOM05D006451 ORTHO05D007680 1.2e-109 400.6 325 63.7
MSTRG.4055 Avicennia marina HOM05D006451 ORTHO05D007680 1.5e-109 400.2 310 65.2
PSO170G5536 Papaver somniferum HOM05D006451 ORTHO05D007680 7.6e-109 397.9 316 63.6
VMungo0720G2899 Vigna mungo HOM05D006451 ORTHO05D007680 1.3e-108 397.1 309 66.3
ClCG06G006410 Citrullus lanatus HOM05D006451 ORTHO05D007680 2.2e-108 396.4 345 61.7
AUR62034703 Chenopodium quinoa HOM05D006451 ORTHO05D007680 2.9e-108 396.0 319 63.3
PSO210G4482 Papaver somniferum HOM05D006451 ORTHO05D007680 2.9e-108 396.0 316 63.6
Nitab4.5_0000085g0050 Nicotiana tabacum HOM05D006451 ORTHO05D007680 1.4e-107 393.7 311 65.6
RcHm_v2.0_Chr4g0387501 Rosa chinensis HOM05D006451 ORTHO05D007680 2.1e-106 389.8 329 62.6
ECA248G3783 Erigeron canadensis HOM05D006451 ORTHO05D007680 7.8e-106 387.9 307 63.2
AUR62043956 Chenopodium quinoa HOM05D006451 ORTHO05D007680 1.0e-105 387.5 319 62.4
Zm00001eb031280 Zea mays HOM05D006451 ORTHO05D007680 6.6e-105 384.8 321 62.0
Lsat_1_v5_gn_1_112581 Lactuca sativa HOM05D006451 ORTHO05D007680 1.9e-104 383.3 299 64.2
Peaxi162Scf00520g00039 Petunia axillaris HOM05D006451 ORTHO05D007680 2.1e-103 379.8 292 67.1
Rhsim02G0028200 Rhododendron simsii HOM05D006451 ORTHO05D007680 2.1e-103 379.8 322 61.5
HanXRQChr11g0342781 Helianthus annuus HOM05D006451 ORTHO05D007680 2.8e-103 379.4 311 62.4
FAN22G0671 Fragaria x ananassa HOM05D006451 ORTHO05D007680 8.1e-103 377.9 361 57.9
HPP92_001912 Vanilla planifolia HOM05D006451 ORTHO05D007680 2.6e-101 372.9 327 60.2
Os12g0604800 Oryza sativa ssp. japonica HOM05D006451 ORTHO05D007680 5.8e-101 371.7 307 60.9
arahy.Tifrunner.gnm1.ann1.E7JLC4 Arachis hypogaea HOM05D006451 ORTHO05D007680 1.3e-100 370.5 419 51.3
CDE10G0543 Ceratophyllum demersum HOM05D006451 ORTHO05D007680 1.3e-100 370.5 307 61.9
CSS0014602 Camellia sinensis var. sinensis HOM05D006451 ORTHO05D007680 3.8e-100 369.0 316 61.1
Haze_11218 Corylus avellana HOM05D006451 ORTHO05D007680 3.8e-100 369.0 327 61.2
FAN17G1940 Fragaria x ananassa HOM05D006451 ORTHO05D007680 6.4e-100 368.2 373 55.8
Nitab4.5_0003249g0030 Nicotiana tabacum HOM05D006451 ORTHO05D007680 2.4e-99 366.3 291 66.0
CDE10G0598 Ceratophyllum demersum HOM05D006451 ORTHO05D007680 2.1e-98 363.2 312 61.2
Lj6A610G48 Lonicera japonica HOM05D006451 ORTHO05D007680 2.1e-98 363.2 297 63.6
EL10Ac3g06461 Beta vulgaris HOM05D006451 ORTHO05D007680 1.0e-97 360.9 393 51.1
Ah.07g204140 Amaranthus hybridus HOM05D006451 ORTHO05D007680 2.3e-97 359.8 330 58.5
SGA_v2.0_scaffold191G40453 Striga asiatica HOM05D006451 ORTHO05D007680 9.6e-96 354.4 304 61.5
ATR0665G102 Amborella trichopoda HOM05D006451 ORTHO05D007680 6.2e-95 351.7 303 59.7
vmacro15365 Vaccinium macrocarpon HOM05D006451 ORTHO05D007680 8.1e-95 351.3 270 65.6
Migut.G00375 Erythranthe guttata HOM05D006451 ORTHO05D007680 9.9e-93 344.4 306 60.1
Cfa008457 Carpinus fangiana HOM05D006451 ORTHO05D007680 1.4e-91 340.5 209 77.5
Nn6g34139 Nelumbo nucifera HOM05D006451 ORTHO05D007680 2.4e-91 339.7 312 57.7
Dinv44567 Davidia involucrata HOM05D006451 ORTHO05D007680 5.5e-91 338.6 208 76.9
unitig_899.g14873 Utricularia gibba HOM05D006451 ORTHO05D007680 1.0e-89 334.3 334 56.0
Eucgr.H03421 Eucalyptus grandis HOM05D006451 ORTHO05D007680 6.9e-86 321.6 214 71.0
arahy.Tifrunner.gnm1.ann1.9LTU7I Arachis hypogaea HOM05D006451 ORTHO05D007680 1.8e-78 297.0 170 81.8
arahy.Tifrunner.gnm1.ann1.D3KIH0 Arachis hypogaea HOM05D006451 ORTHO05D007680 1.8e-78 297.0 170 81.8
DCAR_027237 Daucus carota HOM05D006451 ORTHO05D007680 9.0e-78 294.7 248 64.1
FAN12G3362 Fragaria x ananassa HOM05D006451 ORTHO05D007680 1.4e-75 287.3 261 60.9
TPR.G25159 Trifolium pratense HOM05D006451 ORTHO05D007680 2.6e-69 266.5 233 60.5
Mapoly0182s0013 Marchantia polymorpha HOM05D006451 ORTHO05D007680 1.2e-66 257.7 324 45.4
SalBow2G3248 Salvia bowleyana HOM05D006451 ORTHO05D007680 4.2e-59 232.6 144 71.5
CBR_g18988 Chara braunii HOM05D006451 ORTHO05D007680 1.3e-44 184.5 318 35.8
SMO348G0048 Selaginella moellendorffii HOM05D006451 ORTHO05D007680 7.2e-43 178.7 210 44.3
Haze_11222 Corylus avellana HOM05D006451 ORTHO05D007680 2.7e-42 176.8 315 40.0
AagrBONN_evm.TU.Sc2ySwM_362.195 Anthoceros agrestis HOM05D006451 ORTHO05D007680 9.1e-38 161.8 192 41.7
arahy.Tifrunner.gnm1.ann1.1SA9RR Arachis hypogaea HOM05D006451 ORTHO05D007680 2.9e-28 130.2 166 50.0
arahy.Tifrunner.gnm1.ann1.45YQSM Arachis hypogaea HOM05D006451 ORTHO05D007680 6.1e-26 122.5 159 49.7
arahy.Tifrunner.gnm1.ann1.Q3A75N Arachis hypogaea HOM05D006451 ORTHO05D007680 6.1e-26 122.5 159 49.7
FAN12G0848 Fragaria x ananassa HOM05D006451 ORTHO05D007680 4.4e-24 116.3 75 69.3
Cpa.g.sc44.112 Carica papaya HOM05D006451 ORTHO05D007680 7.8e-21 105.5 62 88.7
AL1G13750 Arabidopsis lyrata HOM05D000259 ORTHO05D000155 1.2e-18 98.2 52 96.2
Cre02.g106850 Chlamydomonas reinhardtii HOM05D006451 ORTHO05D007680 3.2e-14 83.6 292 38.4
Pp3c17_1530 Physcomitrium patens HOM05D006451 ORTHO05D007680 2.3e-12 77.4 149 35.6
vmacro13396 Vaccinium macrocarpon HOM05D006451 ORTHO05D007680 4.7e-10 69.7 46 71.7
PGSC0003DMG401007686 Solanum tuberosum HOM05D006451 ORTHO05D007680 1.1e-09 68.6 40 82.5
PRCOL_00005325 Prasinoderma coloniale HOM05D006451 ORTHO05D007680 1.2e-08 65.1 68 57.4
Actinidia18533 Actinidia chinensis HOM05D006451 ORTHO05D007680 1.7e-07 61.2 57 56.1
Nitab4.5_0004059g0030 Nicotiana tabacum HOM05D002462 ORTHO05D002893 2.2e-07 60.8 55 58.2
Migut.A00861 Erythranthe guttata HOM05D002462 ORTHO05D002893 2.9e-07 60.5 55 60.0
PGSC0003DMG400012480 Solanum tuberosum HOM05D002462 ORTHO05D002893 3.7e-07 60.1 60 53.3
SEGI_25674 Sequoiadendron giganteum HOM05D006451 ORTHO05D007680 4.9e-07 59.7 38 73.7
Cre03.g189950 Chlamydomonas reinhardtii HOM05D002462 ORTHO05D002893 6.4e-07 59.3 56 53.6
COL.COLO4_33570 Corchorus olitorius HOM05D000868 ORTHO05D000711 8.3e-07 58.9 58 50.0
SalBow6G5274 Salvia bowleyana HOM05D002462 ORTHO05D002893 8.3e-07 58.9 55 56.4
Haze_08589 Corylus avellana HOM05D002462 ORTHO05D002893 1.1e-06 58.5 55 56.4
Os02g0754500 Oryza sativa ssp. japonica HOM05D001310 ORTHO05D001283 1.1e-06 58.5 60 53.3
Sc12g0007230 Simmondsia chinensis HOM05D001310 ORTHO05D001283 1.1e-06 58.5 53 58.5
HanXRQChr05g0142641 Helianthus annuus HOM05D001310 ORTHO05D001283 1.4e-06 58.2 76 46.1
PRCOL_00004439 Prasinoderma coloniale HOM05D001789 ORTHO05D001755 1.4e-06 58.2 56 55.4
TWI14G0736 Tripterygium wilfordii HOM05D000868 ORTHO05D000711 1.4e-06 58.2 71 49.3
BcaB08g37206 Brassica carinata HOM05D001310 ORTHO05D001283 1.9e-06 57.8 63 47.6
ECA240G0103 Erigeron canadensis HOM05D001310 ORTHO05D001283 1.9e-06 57.8 59 50.8
MD04G1081900 Malus domestica HOM05D002462 ORTHO05D002893 1.9e-06 57.8 55 56.4
Cfa012782 Carpinus fangiana HOM05D002462 ORTHO05D002893 3.2e-06 57.0 55 56.4
HanXRQChr03g0067581 Helianthus annuus HOM05D001310 ORTHO05D001283 3.2e-06 57.0 50 60.0
Prupe.5G076500 Prunus persica HOM05D002462 ORTHO05D002893 3.2e-06 57.0 55 54.5
Rhsim08G0126200 Rhododendron simsii HOM05D001310 ORTHO05D001283 3.2e-06 57.0 56 53.6
Actinidia28137 Actinidia chinensis HOM05D001310 ORTHO05D001283 4.1e-06 56.6 54 57.4
Actinidia35128 Actinidia chinensis HOM05D001310 ORTHO05D001283 4.1e-06 56.6 53 56.6
arahy.Tifrunner.gnm1.ann1.L0KBB2 Arachis hypogaea HOM05D000868 ORTHO05D000711 4.1e-06 56.6 70 42.9
Hma1.2p1_0669F.1_g200140 Hydrangea macrophylla HOM05D001310 ORTHO05D001283 4.1e-06 56.6 54 55.6
Lsat_1_v5_gn_9_117041 Lactuca sativa HOM05D001310 ORTHO05D001283 4.1e-06 56.6 59 52.5
SGA_v2.0_scaffold120G32841 Striga asiatica HOM05D002462 ORTHO05D002893 4.1e-06 56.6 55 54.5
TWI59G0850 Tripterygium wilfordii HOM05D000868 ORTHO05D000711 4.1e-06 56.6 71 49.3
HPP92_004126 Vanilla planifolia HOM05D001310 ORTHO05D001283 4.1e-06 56.6 62 53.2
CBR_g36926 Chara braunii HOM05D001310 ORTHO05D001283 5.4e-06 56.2 59 50.8
Ca_01458_v3 Cicer arietinum L. HOM05D000868 ORTHO05D000711 5.4e-06 56.2 67 44.8
Eucgr.K02274 Eucalyptus grandis HOM05D001310 ORTHO05D001283 5.4e-06 56.2 54 55.6
FvH4_5g17380 Fragaria vesca HOM05D001310 ORTHO05D001283 5.4e-06 56.2 53 54.7
FAN08G1056 Fragaria x ananassa HOM05D001310 ORTHO05D001283 5.4e-06 56.2 53 54.7
FAN13G2361 Fragaria x ananassa HOM05D001310 ORTHO05D001283 5.4e-06 56.2 53 54.7
FAN18G0790 Fragaria x ananassa HOM05D001310 ORTHO05D001283 5.4e-06 56.2 53 54.7
Hma1.2p1_1868F.1_g306000 Hydrangea macrophylla HOM05D002462 ORTHO05D002893 5.4e-06 56.2 55 52.7
Hma1.2p1_2244F.1_g317950 Hydrangea macrophylla HOM05D002462 ORTHO05D002893 5.4e-06 56.2 55 52.7
PSO541G4490 Papaver somniferum HOM05D000868 ORTHO05D000711 5.4e-06 56.2 50 50.0
PSO675G1165 Papaver somniferum HOM05D000868 ORTHO05D000711 5.4e-06 56.2 50 50.0
Sed0008444 Sechium edule HOM05D002462 ORTHO05D002893 5.4e-06 56.2 55 54.5
CAN.G843.55 Capsicum annuum HOM05D001310 ORTHO05D001283 7.1e-06 55.8 68 45.6
Cpa.g.sc29.105 Carica papaya HOM05D002462 ORTHO05D002893 7.1e-06 55.8 55 52.7
Haze_26906 Corylus avellana HOM05D002462 ORTHO05D002893 7.1e-06 55.8 63 49.2
Eucgr.F01225 Eucalyptus grandis HOM05D000868 ORTHO05D000711 7.1e-06 55.8 70 44.3
Pp3c7_6470 Physcomitrium patens HOM05D001310 ORTHO05D001283 7.1e-06 55.8 59 49.2
PGR083G1224 Punica granatum HOM05D001310 ORTHO05D001283 7.1e-06 55.8 53 56.6
Zm00001eb255310 Zea mays HOM05D001310 ORTHO05D001283 7.1e-06 55.8 60 48.3
AT5G09420 Arabidopsis thaliana HOM05D001310 ORTHO05D001283 9.2e-06 55.5 64 51.6
A10p27860 Brassica napus HOM05D001310 ORTHO05D001283 9.2e-06 55.5 63 47.6
Cfa005584 Carpinus fangiana HOM05D001310 ORTHO05D001283 9.2e-06 55.5 64 51.6
Duzib068G0977 Durio zibethinus HOM05D001310 ORTHO05D001283 9.2e-06 55.5 64 50.0
Glyma.05G055600 Glycine max HOM05D002462 ORTHO05D002893 9.2e-06 55.5 55 54.5
MBI12_g33080_MAGBIO Magnolia biondii HOM05D001310 ORTHO05D001283 9.2e-06 55.5 62 51.6
Oeu000249.3 Olea europaea HOM05D001310 ORTHO05D001283 9.2e-06 55.5 59 52.5
Sp6g33910 Schrenkiella parvula HOM05D001310 ORTHO05D001283 9.2e-06 55.5 63 46.0
GSVIVG01038788001 Vitis vinifera HOM05D001310 ORTHO05D001283 9.2e-06 55.5 64 51.6
Zm00001eb186100 Zea mays HOM05D002462 ORTHO05D002893 9.2e-06 55.5 55 56.4
Zm00001eb248730 Zea mays HOM05D002462 ORTHO05D002893 9.2e-06 55.5 55 56.4


User provided reference genes

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