Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 0.0e+00 1352.8 634 100.0
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 0.0e+00 1336.2 634 98.3
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 0.0e+00 1298.5 634 95.6
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 0.0e+00 1295.0 634 95.0
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 0.0e+00 1291.6 641 94.2
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 0.0e+00 1287.3 642 94.4
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1285.8 642 94.2
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1283.9 642 94.2
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 0.0e+00 1283.9 642 94.2
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 0.0e+00 1271.5 619 95.6
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 0.0e+00 1260.7 643 92.7
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 0.0e+00 1257.3 643 92.4
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1250.3 670 89.3
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 0.0e+00 1248.8 636 92.3
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1248.0 670 88.8
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 0.0e+00 1230.3 642 90.7
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 0.0e+00 1173.7 662 83.4
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 0.0e+00 1144.0 542 98.2
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 0.0e+00 1089.7 610 80.7
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 0.0e+00 1087.0 643 77.4
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 0.0e+00 1085.5 631 78.6
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1085.1 609 80.3
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1084.3 610 79.8
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 0.0e+00 1075.5 609 79.3
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1075.1 609 80.1
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 8.7e-312 1072.8 635 76.9
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 3.9e-311 1070.8 611 79.9
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 5.2e-311 1070.5 631 76.5
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 6.5e-311 1070.1 630 77.3
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 1.9e-310 1068.5 629 77.3
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 3.3e-310 1067.8 609 78.7
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 5.6e-310 1067.0 629 77.3
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 1.6e-309 1065.4 627 77.7
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 1.6e-309 1065.4 609 78.5
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 3.6e-309 1064.3 636 75.9
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 6.2e-309 1063.5 656 74.2
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 1.4e-308 1062.4 604 78.3
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 1.8e-308 1062.0 612 77.6
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 3.1e-308 1061.2 625 77.3
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 5.2e-308 1060.4 611 79.1
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 8.9e-308 1059.7 628 76.6
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 1.5e-307 1058.9 631 78.1
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 2.6e-307 1058.1 627 76.7
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 7.6e-307 1056.6 646 75.7
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 7.6e-307 1056.6 631 78.0
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 7.6e-307 1056.6 630 76.5
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 7.6e-307 1056.6 625 77.3
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 1.7e-306 1055.4 635 75.7
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 2.2e-306 1055.0 630 76.0
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 6.4e-306 1053.5 608 78.3
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 9.2e-305 1049.7 627 75.8
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 2.1e-304 1048.5 630 75.7
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 4.6e-304 1047.3 605 78.2
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 1.7e-303 1045.4 604 77.5
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 1.7e-303 1045.4 605 78.5
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 1.7e-303 1045.4 602 78.4
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 5.1e-303 1043.9 640 74.5
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 8.7e-303 1043.1 629 74.9
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 2.5e-302 1041.6 602 78.1
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 9.6e-302 1039.6 612 77.1
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 9.6e-302 1039.6 610 77.2
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 2.8e-301 1038.1 629 74.9
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 8.1e-301 1036.6 625 74.9
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 1.5e-299 1032.3 633 73.9
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 1.5e-299 1032.3 619 75.9
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 3.4e-299 1031.2 612 76.6
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 2.9e-298 1028.1 601 77.9
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 1.4e-297 1025.8 628 74.8
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 1.1e-294 1016.1 577 79.9
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 1.1e-294 1016.1 585 78.6
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 1.1e-294 1016.1 608 76.2
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 1.1e-294 1016.1 749 64.6
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 4.3e-294 1014.2 621 73.8
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 2.8e-293 1011.5 612 75.8
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 1.1e-292 1009.6 584 78.9
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 3.4e-291 1004.6 718 66.6
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 8.7e-287 989.9 606 74.6
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 4.8e-285 984.2 683 67.8
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 4.5e-283 977.6 635 72.1
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 1.3e-282 976.1 842 57.0
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 2.1e-280 968.8 605 74.4
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.1e-278 963.0 665 68.1
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 2.4e-276 955.3 646 69.0
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 4.6e-272 941.0 627 70.3
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 3.9e-271 937.9 567 74.8
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 1.8e-268 929.1 557 76.1
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 2.2e-266 922.2 519 80.2
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 2.2e-261 905.6 575 72.5
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 3.7e-261 904.8 623 68.9
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 8.2e-261 903.7 557 74.1
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 1.8e-260 902.5 520 79.0
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 1.6e-256 889.4 520 79.0
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 1.0e-255 886.7 634 67.2
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 1.5e-254 882.9 554 73.3
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 2.6e-254 882.1 612 68.8
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 3.5e-251 871.7 546 73.4
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 1.1e-241 840.1 587 68.5
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 8.0e-240 833.9 605 62.8
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 8.0e-240 833.9 572 67.5
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 4.4e-238 828.2 625 61.6
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 2.0e-230 802.7 598 60.7
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 3.1e-228 795.4 596 60.4
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 1.3e-226 790.0 587 64.7
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 4.3e-217 758.4 491 70.1
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 8.6e-210 734.2 446 77.1
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 7.3e-209 731.1 557 61.2
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 1.4e-191 673.7 411 74.9
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 1.4e-180 637.1 461 65.7
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 9.9e-174 614.4 375 74.7
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 4.2e-172 609.0 352 78.7
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 3.1e-167 592.8 452 63.9
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 8.8e-122 441.8 245 79.6
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 4.4e-121 439.5 456 50.2
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 5.0e-117 426.0 233 83.3
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 9.2e-87 325.5 202 74.3
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 8.4e-80 302.4 168 81.5
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.1e-76 292.0 188 68.1
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 2.0e-73 281.2 178 73.0
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 4.0e-58 230.3 122 84.4
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 3.4e-57 227.3 130 76.9
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 8.7e-53 212.6 343 37.6
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 4.6e-46 190.3 118 73.7
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 8.7e-45 186.0 105 79.0
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 8.7e-45 186.0 161 52.8
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 1.0e-40 172.6 83 89.2
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 3.9e-37 160.6 121 58.7
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.3e-35 155.6 115 71.3
CSS0009798 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.1e-28 132.5 87 70.1
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 2.5e-28 131.3 72 81.9
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 4.3e-28 130.6 211 35.5
CSS0004187 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 2.6e-25 121.3 87 65.5
CSS0032793 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 2.6e-25 121.3 87 65.5
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.0e-24 119.4 148 45.3
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 8.5e-24 116.3 94 67.0
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 1.6e-22 112.1 225 29.8
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 1.0e-21 109.4 441 25.2
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 8.8e-21 106.3 51 84.3
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 1.1e-20 105.9 82 64.6
PRCOL_00006657 Prasinoderma coloniale HOM05D001762 ORTHO05D001774 4.4e-20 104.0 394 23.6
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 1.8e-18 98.6 138 42.8
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 5.9e-17 93.6 78 55.1
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.0e-16 92.8 55 70.9
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.0e-16 92.8 55 70.9
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.5e-15 88.2 55 69.1
CSS0050068 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.6e-14 85.5 79 53.2
Phvul.008G143913 Phaseolus vulgaris HOM05D004940 ORTHO05D022117 2.7e-14 84.7 79 55.7
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 2.7e-14 84.7 68 58.8
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.5e-12 79.0 50 68.0
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.5e-12 79.0 50 68.0
Lj4C73T15 Lonicera japonica HOM05D006117 ORTHO05D007996 2.9e-08 64.7 264 26.1
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 5.0e-08 63.9 34 64.7
Hund05287 Selenicereus undatus HOM05D006117 ORTHO05D007996 5.0e-08 63.9 257 25.3
CANSAT25G2369 Cannabis sativa HOM05D006117 ORTHO05D007996 8.5e-08 63.2 260 26.5
Aa31LG7G10150 Aethionema arabicum HOM05D006117 ORTHO05D007996 1.1e-07 62.8 226 27.0
Ciclev10001149m.g Citrus clementina HOM05D006117 ORTHO05D007996 1.5e-07 62.4 261 24.9
FAN15G1845 Fragaria x ananassa HOM05D006117 ORTHO05D007996 3.2e-07 61.2 261 25.3
AUR62037469 Chenopodium quinoa HOM05D006117 ORTHO05D007996 4.2e-07 60.8 220 26.8
BcaC06g35298 Brassica carinata HOM05D006117 ORTHO05D007996 7.2e-07 60.1 263 26.6
C07p17700 Brassica napus HOM05D006117 ORTHO05D007996 7.2e-07 60.1 263 26.6
FAN20G1172 Fragaria x ananassa HOM05D006117 ORTHO05D007996 7.2e-07 60.1 259 25.9
Thecc.08G085800 Theobroma cacao HOM05D006117 ORTHO05D007996 7.2e-07 60.1 260 25.8
Medtr3g103300 Medicago truncatula HOM05D006117 ORTHO05D007996 1.6e-06 58.9 299 25.1
Actinidia10214 Actinidia chinensis HOM05D006117 ORTHO05D007996 2.1e-06 58.5 261 25.3
Sabra14G0008600 Salix brachista HOM05D006117 ORTHO05D007996 2.1e-06 58.5 260 24.6
SGA_v2.0_scaffold238G43920 Striga asiatica HOM05D006117 ORTHO05D007996 2.1e-06 58.5 258 25.6
Cc10_g05140 Coffea canephora HOM05D006117 ORTHO05D007996 2.7e-06 58.2 265 24.9
HanXRQChr10g0279141 Helianthus annuus HOM05D006117 ORTHO05D007996 2.7e-06 58.2 259 23.9
BcaB03g13981 Brassica carinata HOM05D006117 ORTHO05D007996 6.1e-06 57.0 265 25.3
FAN27G0951 Fragaria x ananassa HOM05D006117 ORTHO05D007996 8.0e-06 56.6 218 25.7


User provided reference genes

Program Settings