Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G03850 Arabidopsis thaliana HOM05D000116 ORTHO05D002933 1.1e-81 306.6 157 100.0
AL1G13430 Arabidopsis lyrata HOM05D000116 ORTHO05D002933 1.7e-45 186.4 116 84.5
Carub.0001s0299 Capsella rubella HOM05D000116 ORTHO05D002933 3.9e-39 165.2 108 81.5
A09p68180 Brassica napus HOM05D000116 ORTHO05D002933 1.2e-35 153.7 106 73.6
C08p52630 Brassica napus HOM05D000116 ORTHO05D002933 1.2e-35 153.7 106 73.6
BraA09t42153Z Brassica rapa HOM05D000116 ORTHO05D002933 1.2e-35 153.7 106 73.6
CARHR003180 Cardamine hirsuta HOM05D000116 ORTHO05D002933 2.6e-35 152.5 107 74.8
BolC8t52789H Brassica oleracea HOM05D000116 ORTHO05D002933 3.5e-35 152.1 111 70.3
BcaC05g24496 Brassica carinata HOM05D000116 ORTHO05D002933 4.5e-35 151.8 105 79.0
BolC5t28998H Brassica oleracea HOM05D000116 ORTHO05D002933 4.5e-35 151.8 105 79.0
BcaC07g42225 Brassica carinata HOM05D000116 ORTHO05D002933 1.5e-33 146.7 109 69.7
C05p02200 Brassica napus HOM05D000116 ORTHO05D002933 1.5e-33 146.7 105 77.1
A10p02380 Brassica napus HOM05D000116 ORTHO05D002933 4.7e-32 141.7 105 75.2
BraA10t42507Z Brassica rapa HOM05D000116 ORTHO05D002933 4.7e-32 141.7 105 75.2
Thhalv10008980m.g Eutrema salsugineum HOM05D000116 ORTHO05D002933 9.1e-28 127.5 106 66.0
Aa31LG1G9040 Aethionema arabicum HOM05D000116 ORTHO05D002933 3.3e-17 92.4 99 51.5
Sp1g02710 Schrenkiella parvula HOM05D000116 ORTHO05D002933 7.5e-14 81.3 41 90.2
A08p37200 Brassica napus HOM05D002538 ORTHO05D013978 2.4e-12 76.3 41 80.5
BraA08t35619Z Brassica rapa HOM05D002538 ORTHO05D013978 2.4e-12 76.3 41 80.5
Cpa.g.sc165.2 Carica papaya HOM05D000116 ORTHO05D002933 6.6e-10 68.2 63 58.7
THA.LOC104801158 Tarenaya hassleriana HOM05D000116 ORTHO05D002933 1.9e-09 66.6 99 42.4
CANSAT64G2976 Cannabis sativa HOM05D000116 ORTHO05D002933 3.3e-09 65.9 101 42.6
Sabra07G0109300 Salix brachista HOM05D000116 ORTHO05D002933 3.3e-09 65.9 89 44.9
Haze_13263 Corylus avellana HOM05D000116 ORTHO05D002933 5.6e-09 65.1 101 40.6
Manes.13G141400 Manihot esculenta HOM05D000116 ORTHO05D002933 5.6e-09 65.1 49 65.3
Prupe.2G094300 Prunus persica HOM05D000116 ORTHO05D002933 5.6e-09 65.1 59 54.2
arahy.Tifrunner.gnm1.ann1.33VSCB Arachis hypogaea HOM05D000116 ORTHO05D002933 7.3e-09 64.7 46 63.0
arahy.Tifrunner.gnm1.ann1.8LR72L Arachis hypogaea HOM05D000116 ORTHO05D002933 7.3e-09 64.7 46 63.0
Thecc.06G180000 Theobroma cacao HOM05D000116 ORTHO05D002933 9.5e-09 64.3 98 43.9
CSS0021697 Camellia sinensis var. sinensis HOM05D000116 ORTHO05D002933 1.2e-08 63.9 73 49.3
CSS0048516 Camellia sinensis var. sinensis HOM05D000116 ORTHO05D002933 1.2e-08 63.9 73 49.3
CiPaw.03G182700 Carya illinoinensis HOM05D000116 ORTHO05D002933 1.2e-08 63.9 105 43.8
Dinv40609 Davidia involucrata HOM05D000116 ORTHO05D002933 1.2e-08 63.9 50 58.0
Potri.017G017300 Populus trichocarpa HOM05D000116 ORTHO05D002933 1.6e-08 63.5 41 70.7
Sabra17G0013500 Salix brachista HOM05D000116 ORTHO05D002933 1.6e-08 63.5 102 44.1
TWI14G0430 Tripterygium wilfordii HOM05D000116 ORTHO05D002933 1.6e-08 63.5 59 52.5
COL.COLO4_31405 Corchorus olitorius HOM05D000116 ORTHO05D002933 2.8e-08 62.8 87 46.0
GSVIVG01020614001 Vitis vinifera HOM05D000116 ORTHO05D002933 2.8e-08 62.8 55 58.2
MSTRG.15125 Avicennia marina HOM05D000116 ORTHO05D002933 3.6e-08 62.4 55 61.8
CSS0047198 Camellia sinensis var. sinensis HOM05D000116 ORTHO05D002933 3.6e-08 62.4 56 58.9
Cpa.g.sc1080.2 Carica papaya HOM05D000116 ORTHO05D002933 3.6e-08 62.4 72 48.6
Gohir.D02G177100 Gossypium hirsutum HOM05D000116 ORTHO05D002933 3.6e-08 62.4 41 68.3
Gorai.005G198800 Gossypium raimondii HOM05D000116 ORTHO05D002933 3.6e-08 62.4 41 68.3
TAR626G0603 Trochodendron aralioides HOM05D000116 ORTHO05D002933 3.6e-08 62.4 46 63.0
TAR627G0214 Trochodendron aralioides HOM05D000116 ORTHO05D002933 3.6e-08 62.4 50 56.0
VMungo1127G0877 Vigna mungo HOM05D000116 ORTHO05D002933 3.6e-08 62.4 53 56.6
MELO3C007253.2 Cucumis melo HOM05D000116 ORTHO05D002933 4.7e-08 62.0 41 68.3
Glyma.12G119200 Glycine max HOM05D000116 ORTHO05D002933 4.7e-08 62.0 56 55.4
PSO210G3250 Papaver somniferum HOM05D000116 ORTHO05D002933 4.7e-08 62.0 52 51.9
PSO832G0768 Papaver somniferum HOM05D000116 ORTHO05D002933 4.7e-08 62.0 49 53.1
Thecc.02G187600 Theobroma cacao HOM05D000116 ORTHO05D002933 4.7e-08 62.0 41 63.4
Atru.chr6.2859 Acer truncatum HOM05D000116 ORTHO05D002933 6.1e-08 61.6 41 68.3
Medtr4g079110 Medicago truncatula HOM05D000116 ORTHO05D002933 6.1e-08 61.6 103 40.8
Phvul.011G122900 Phaseolus vulgaris HOM05D000116 ORTHO05D002933 6.1e-08 61.6 53 56.6
Rhsim06G0136100 Rhododendron simsii HOM05D000116 ORTHO05D002933 6.1e-08 61.6 96 42.7
Atru.chr10.1778 Acer truncatum HOM05D000116 ORTHO05D002933 8.0e-08 61.2 62 50.0
ClCG00G002760 Citrullus lanatus HOM05D000116 ORTHO05D002933 1.0e-07 60.8 41 63.4
ClCG01G023330 Citrullus lanatus HOM05D000116 ORTHO05D002933 1.0e-07 60.8 41 63.4
COL.COLO4_07344 Corchorus olitorius HOM05D000116 ORTHO05D002933 1.0e-07 60.8 41 65.9
Duzib132G1006 Durio zibethinus HOM05D000116 ORTHO05D002933 1.0e-07 60.8 41 63.4
Duzib248G0911 Durio zibethinus HOM05D000116 ORTHO05D002933 1.0e-07 60.8 47 59.6
MD05G1309500 Malus domestica HOM05D000116 ORTHO05D002933 1.0e-07 60.8 65 50.8
MSTRG.15843 Avicennia marina HOM05D000116 ORTHO05D002933 1.4e-07 60.5 77 42.9
Dinv04585 Davidia involucrata HOM05D000116 ORTHO05D002933 1.4e-07 60.5 43 62.8
Dinv17363 Davidia involucrata HOM05D000116 ORTHO05D002933 1.4e-07 60.5 72 45.8
Gohir.A03G154200 Gossypium hirsutum HOM05D000116 ORTHO05D002933 1.4e-07 60.5 41 65.9
Gohir.A10G028400 Gossypium hirsutum HOM05D000116 ORTHO05D002933 1.4e-07 60.5 99 45.5
MD10G1288100 Malus domestica HOM05D000116 ORTHO05D002933 1.4e-07 60.5 41 65.9
Dinv06848 Davidia involucrata HOM05D000116 ORTHO05D002933 1.8e-07 60.1 41 65.9
FAN21G2173 Fragaria x ananassa HOM05D000116 ORTHO05D002933 1.8e-07 60.1 56 50.0
Nitab4.5_0000621g0030 Nicotiana tabacum HOM05D000116 ORTHO05D002933 1.8e-07 60.1 107 39.3
TWI38G1940 Tripterygium wilfordii HOM05D000116 ORTHO05D002933 1.8e-07 60.1 69 47.8
Cfa000536 Carpinus fangiana HOM05D000116 ORTHO05D002933 2.3e-07 59.7 64 46.9
FvH4_3g08470 Fragaria vesca HOM05D000116 ORTHO05D002933 2.3e-07 59.7 53 52.8
FAN16G3035 Fragaria x ananassa HOM05D000116 ORTHO05D002933 2.3e-07 59.7 53 52.8
Glyma.06G287000 Glycine max HOM05D000116 ORTHO05D002933 2.3e-07 59.7 50 58.0
Glyma.13G293700 Glycine max HOM05D000116 ORTHO05D002933 2.3e-07 59.7 41 65.9
HanXRQChr17g0554931 Helianthus annuus HOM05D000116 ORTHO05D002933 2.3e-07 59.7 64 50.0
PGR042G3500 Punica granatum HOM05D000116 ORTHO05D002933 2.3e-07 59.7 41 68.3
SalBow7G1317 Salvia bowleyana HOM05D000116 ORTHO05D002933 2.3e-07 59.7 57 54.4
Sed0019359 Sechium edule HOM05D000116 ORTHO05D002933 2.3e-07 59.7 57 52.6
TWI59G1029 Tripterygium wilfordii HOM05D000116 ORTHO05D002933 2.3e-07 59.7 102 41.2
CiPaw.04G129400 Carya illinoinensis HOM05D000116 ORTHO05D002933 3.0e-07 59.3 73 45.2
Lsat_1_v5_gn_8_137081 Lactuca sativa HOM05D000116 ORTHO05D002933 3.0e-07 59.3 43 62.8
Nn1g04259 Nelumbo nucifera HOM05D000116 ORTHO05D002933 3.0e-07 59.3 52 55.8
Psat7g136880 Pisum sativum HOM05D000116 ORTHO05D002933 3.0e-07 59.3 107 42.1
QL08p040721 Quercus lobata HOM05D000116 ORTHO05D002933 3.0e-07 59.3 102 41.2
Cfa014670 Carpinus fangiana HOM05D000116 ORTHO05D002933 4.0e-07 58.9 42 61.9
Gohir.A05G158400 Gossypium hirsutum HOM05D000116 ORTHO05D002933 4.0e-07 58.9 98 41.8
Nn1g06397 Nelumbo nucifera HOM05D000116 ORTHO05D002933 4.0e-07 58.9 61 50.8
Potri.011G058800 Populus trichocarpa HOM05D000116 ORTHO05D002933 4.0e-07 58.9 102 35.3
Solyc07g053550.3 Solanum lycopersicum HOM05D000116 ORTHO05D002933 4.0e-07 58.9 50 54.0
BcaB07g32468 Brassica carinata HOM05D000500 ORTHO05D000367 5.2e-07 58.5 54 55.6
Ciclev10017057m.g Citrus clementina HOM05D000116 ORTHO05D002933 5.2e-07 58.5 68 47.1
Haze_06364 Corylus avellana HOM05D000116 ORTHO05D002933 5.2e-07 58.5 64 45.3
Migut.M01098 Erythranthe guttata HOM05D000116 ORTHO05D002933 5.2e-07 58.5 63 46.0
Hma1.2p1_1658F.1_g296090 Hydrangea macrophylla HOM05D000116 ORTHO05D002933 5.2e-07 58.5 50 54.0
Lj3g0025554 Lotus japonicus HOM05D000116 ORTHO05D002933 5.2e-07 58.5 45 57.8
Prupe.4G053500 Prunus persica HOM05D000116 ORTHO05D002933 5.2e-07 58.5 102 38.2
PGSC0003DMG400009399 Solanum tuberosum HOM05D000116 ORTHO05D002933 5.2e-07 58.5 104 43.3
Ca_18915_v3 Cicer arietinum L. HOM05D000116 ORTHO05D002933 6.8e-07 58.2 99 40.4
Eucgr.A01868 Eucalyptus grandis HOM05D000116 ORTHO05D002933 6.8e-07 58.2 41 63.4
PSO541G1355 Papaver somniferum HOM05D000116 ORTHO05D002933 6.8e-07 58.2 40 65.0
RcHm_v2.0_Chr5g0009361 Rosa chinensis HOM05D000116 ORTHO05D002933 6.8e-07 58.2 72 44.4
SalBow7G1662 Salvia bowleyana HOM05D000116 ORTHO05D002933 6.8e-07 58.2 68 50.0
Actinidia39485 Actinidia chinensis HOM05D000010 ORTHO05D002933 8.9e-07 57.8 78 46.2
Eucgr.K01064 Eucalyptus grandis HOM05D000116 ORTHO05D002933 8.9e-07 57.8 47 53.2
Gohir.D05G161000 Gossypium hirsutum HOM05D000116 ORTHO05D002933 8.9e-07 57.8 40 65.0
PGR042G3110 Punica granatum HOM05D000116 ORTHO05D002933 8.9e-07 57.8 40 65.0
AT1G28480 Arabidopsis thaliana HOM05D000116 ORTHO05D002933 1.2e-06 57.4 58 53.4
MSTRG.14716 Avicennia marina HOM05D000116 ORTHO05D002933 1.2e-06 57.4 53 56.6
CSS0005014 Camellia sinensis var. sinensis HOM05D000116 ORTHO05D002933 1.2e-06 57.4 44 56.8
CSS0018532 Camellia sinensis var. sinensis HOM05D000116 ORTHO05D002933 1.2e-06 57.4 44 56.8
Cc05_g07810 Coffea canephora HOM05D000116 ORTHO05D002933 1.2e-06 57.4 81 42.0
Duzib160G0485 Durio zibethinus HOM05D000116 ORTHO05D002933 1.2e-06 57.4 41 61.0
Migut.H01466 Erythranthe guttata HOM05D000116 ORTHO05D002933 1.2e-06 57.4 58 46.6
Thhalv10009080m.g Eutrema salsugineum HOM05D000116 ORTHO05D002933 1.2e-06 57.4 50 58.0
Gorai.011G030700 Gossypium raimondii HOM05D000116 ORTHO05D002933 1.2e-06 57.4 65 50.8
Potri.007G134800 Populus trichocarpa HOM05D000116 ORTHO05D002933 1.2e-06 57.4 101 42.6
Rhsim02G0135700 Rhododendron simsii HOM05D000116 ORTHO05D002933 1.5e-06 57.0 72 44.4
EL10Ac9g20829 Beta vulgaris HOM05D000116 ORTHO05D002933 2.0e-06 56.6 72 41.7
Duzib235G0691 Durio zibethinus HOM05D000116 ORTHO05D002933 2.0e-06 56.6 98 42.9
Oeu016004.1 Olea europaea HOM05D000116 ORTHO05D002933 2.0e-06 56.6 43 55.8
unitig_26.g9355 Utricularia gibba HOM05D000116 ORTHO05D002933 2.0e-06 56.6 40 62.5
CARHR027970 Cardamine hirsuta HOM05D000116 ORTHO05D002933 2.6e-06 56.2 44 63.6
ECA236G2685 Erigeron canadensis HOM05D000116 ORTHO05D002933 2.6e-06 56.2 53 50.9
Glyma.12G207400 Glycine max HOM05D000116 ORTHO05D002933 2.6e-06 56.2 41 61.0
Oeu064852.1 Olea europaea HOM05D000116 ORTHO05D002933 2.6e-06 56.2 44 54.5
unitig_749.g13660 Utricularia gibba HOM05D000116 ORTHO05D002933 2.6e-06 56.2 40 62.5
Aqoxy1G02298 Aquilegia oxysepala HOM05D000116 ORTHO05D002933 3.4e-06 55.8 41 63.4
MSTRG.13208 Avicennia marina HOM05D000116 ORTHO05D002933 3.4e-06 55.8 91 41.8
AUR62036069 Chenopodium quinoa HOM05D000116 ORTHO05D002933 3.4e-06 55.8 69 46.4
FAN25G1490 Fragaria x ananassa HOM05D000116 ORTHO05D002933 3.4e-06 55.8 70 44.3
Gohir.D10G028800 Gossypium hirsutum HOM05D000116 ORTHO05D002933 3.4e-06 55.8 65 49.2
Gorai.009G166200 Gossypium raimondii HOM05D000116 ORTHO05D002933 3.4e-06 55.8 98 39.8
Hma1.2p1_0002F.1_g002340 Hydrangea macrophylla HOM05D000116 ORTHO05D002933 3.4e-06 55.8 41 58.5
PSO675G6594 Papaver somniferum HOM05D000116 ORTHO05D002933 3.4e-06 55.8 40 62.5
SMO329G0099 Selaginella moellendorffii HOM05D000116 ORTHO05D002933 3.4e-06 55.8 53 52.8
Sopen07g027500 Solanum pennellii HOM05D000116 ORTHO05D002933 3.4e-06 55.8 50 52.0
TPR.G14250 Trifolium pratense HOM05D000006 ORTHO05D000001 3.4e-06 55.8 65 46.2
Aqoxy4G00599 Aquilegia oxysepala HOM05D000116 ORTHO05D002933 4.4e-06 55.5 49 49.0
Cc02_g13990 Coffea canephora HOM05D000116 ORTHO05D002933 4.4e-06 55.5 101 39.6
CsaV3_2G034500 Cucumis sativus L. HOM05D000116 ORTHO05D002933 4.4e-06 55.5 40 60.0
Manes.17G050200 Manihot esculenta HOM05D000116 ORTHO05D002933 4.4e-06 55.5 111 35.1
AUR62043431 Chenopodium quinoa HOM05D000116 ORTHO05D002933 5.8e-06 55.1 78 42.3
ClCG02G010280 Citrullus lanatus HOM05D000116 ORTHO05D002933 5.8e-06 55.1 98 38.8
MELO3C019326.2 Cucumis melo HOM05D000116 ORTHO05D002933 5.8e-06 55.1 58 51.7
Oeu001097.1 Olea europaea HOM05D000116 ORTHO05D002933 5.8e-06 55.1 55 50.9
Oeu012162.1 Olea europaea HOM05D000116 ORTHO05D002933 5.8e-06 55.1 38 63.2
Oeu050238.1 Olea europaea HOM05D000116 ORTHO05D002933 5.8e-06 55.1 41 58.5
Peaxi162Scf00189g00003 Petunia axillaris HOM05D000116 ORTHO05D002933 5.8e-06 55.1 90 37.8
Phvul.005G099700 Phaseolus vulgaris HOM05D000116 ORTHO05D002933 5.8e-06 55.1 41 61.0
PGR004G2626 Punica granatum HOM05D000116 ORTHO05D002933 5.8e-06 55.1 41 61.0
Sed0000971 Sechium edule HOM05D000116 ORTHO05D002933 5.8e-06 55.1 62 48.4
Sed0014115 Sechium edule HOM05D000116 ORTHO05D002933 5.8e-06 55.1 62 48.4
THA.LOC104814233 Tarenaya hassleriana HOM05D000116 ORTHO05D002933 5.8e-06 55.1 56 46.4
BcaC05g26898 Brassica carinata HOM05D000116 ORTHO05D002933 7.5e-06 54.7 59 45.8
C05p27480 Brassica napus HOM05D000116 ORTHO05D002933 7.5e-06 54.7 59 45.8
BolC5t31467H Brassica oleracea HOM05D000116 ORTHO05D002933 7.5e-06 54.7 59 45.8
Lalb_Chr14g0366361 Lupinus albus HOM05D000116 ORTHO05D004279 7.5e-06 54.7 54 40.7
Manes.16G032700 Manihot esculenta HOM05D000116 ORTHO05D002933 7.5e-06 54.7 41 56.1
Nitab4.5_0006091g0010 Nicotiana tabacum HOM05D000116 ORTHO05D002933 7.5e-06 54.7 71 43.7
Solyc10g008150.1 Solanum lycopersicum HOM05D000116 ORTHO05D002933 7.5e-06 54.7 43 58.1
PGSC0003DMG400021856 Solanum tuberosum HOM05D000116 ORTHO05D002933 7.5e-06 54.7 50 52.0
VMungo1080G0708 Vigna mungo HOM05D000116 ORTHO05D002933 7.5e-06 54.7 59 49.2
A09p37560 Brassica napus HOM05D000116 ORTHO05D002933 9.8e-06 54.3 59 45.8
BraA09t39267Z Brassica rapa HOM05D000116 ORTHO05D002933 9.8e-06 54.3 59 45.8
Carub.0001s2695 Capsella rubella HOM05D000116 ORTHO05D002933 9.8e-06 54.3 47 59.6
Lalb_Chr01g0005861 Lupinus albus HOM05D000116 ORTHO05D002933 9.8e-06 54.3 41 61.0
PGR004G2494 Punica granatum HOM05D000116 ORTHO05D002933 9.8e-06 54.3 41 61.0
Sed0002167 Sechium edule HOM05D000116 ORTHO05D002933 9.8e-06 54.3 58 46.6
Sc07g0007140 Simmondsia chinensis HOM05D000116 ORTHO05D002933 9.8e-06 54.3 73 38.4
Sopen10g004020 Solanum pennellii HOM05D000116 ORTHO05D002933 9.8e-06 54.3 50 52.0
unitig_0.g951 Utricularia gibba HOM05D000116 ORTHO05D002933 9.8e-06 54.3 66 42.4


User provided reference genes

Program Settings