Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G03490 Arabidopsis thaliana HOM05D009272 ORTHO05D010513 6.9e-111 404.4 282 100.0
AL1G12990 Arabidopsis lyrata HOM05D009272 ORTHO05D010513 3.9e-53 212.6 211 56.9
AL1G13550 Arabidopsis lyrata HOM05D009272 ORTHO05D010513 3.9e-53 212.6 211 56.9
Carub.0001s0263 Capsella rubella HOM05D007865 ORTHO05D010513 1.1e-31 141.4 210 44.8
Thhalv10017733m.g Eutrema salsugineum HOM05D007865 ORTHO05D010513 1.6e-27 127.5 193 45.1
Thhalv10017700m.g Eutrema salsugineum HOM05D007865 ORTHO05D010513 2.8e-27 126.7 193 45.6
Thhalv10017056m.g Eutrema salsugineum HOM05D007865 ORTHO05D010513 2.0e-25 120.6 213 40.8
BraA10t42475Z Brassica rapa HOM05D009272 ORTHO05D015471 2.6e-25 120.2 154 42.9
A10p02020 Brassica napus HOM05D009272 ORTHO05D015471 4.5e-25 119.4 154 42.9
BcaC02g12720 Brassica carinata HOM05D009272 ORTHO05D010513 5.8e-25 119.0 100 58.0
BcaC05g24525 Brassica carinata HOM05D009272 ORTHO05D015471 9.9e-25 118.2 154 42.9
C04p02100 Brassica napus HOM05D009272 ORTHO05D010513 9.9e-25 118.2 157 43.3
C05p01970 Brassica napus HOM05D009272 ORTHO05D015471 9.9e-25 118.2 154 42.9
C05p02270 Brassica napus HOM05D009272 ORTHO05D015471 9.9e-25 118.2 154 42.9
BolC5t28976H Brassica oleracea HOM05D009272 ORTHO05D015471 9.9e-25 118.2 154 42.9
A10p02460 Brassica napus HOM05D009272 ORTHO05D015471 2.9e-24 116.7 154 42.2
BolC5t29005H Brassica oleracea HOM05D009272 ORTHO05D015471 6.4e-24 115.5 154 42.2
BolC4t21858H Brassica oleracea HOM05D009272 ORTHO05D010513 8.4e-24 115.2 101 54.5
BcaC02g12724 Brassica carinata HOM05D009272 ORTHO05D010513 5.5e-23 112.5 100 55.0
A05p01760 Brassica napus HOM05D009272 ORTHO05D010513 1.6e-22 110.9 203 35.0
BraA05t19173Z Brassica rapa HOM05D009272 ORTHO05D010513 1.6e-22 110.9 203 35.0
C04p02040 Brassica napus HOM05D009272 ORTHO05D010513 2.1e-22 110.5 182 39.0
BolC4t21854H Brassica oleracea HOM05D009272 ORTHO05D010513 2.1e-22 110.5 182 39.0
A05p01800 Brassica napus HOM05D009272 ORTHO05D010513 3.5e-22 109.8 101 51.5
BraA05t19178Z Brassica rapa HOM05D009272 ORTHO05D010513 3.5e-22 109.8 101 51.5
Thhalv10009374m.g Eutrema salsugineum HOM05D009272 ORTHO05D010513 3.9e-21 106.3 98 54.1
BcaB02g06921 Brassica carinata HOM05D009272 ORTHO05D015471 1.1e-20 104.8 160 38.8
BcaB02g06922 Brassica carinata HOM05D009272 ORTHO05D015471 1.1e-20 104.8 160 38.8
BcaB02g06923 Brassica carinata HOM05D009272 ORTHO05D010123 1.1e-20 104.8 160 38.8
BcaB02g06925 Brassica carinata HOM05D009272 ORTHO05D015471 1.1e-20 104.8 160 38.8
BcaB02g06924 Brassica carinata HOM05D009272 ORTHO05D010513 5.6e-20 102.4 98 53.1
BcaC05g24482 Brassica carinata HOM05D009272 ORTHO05D010513 3.1e-18 96.7 137 38.0
Thhalv10011123m.g Eutrema salsugineum HOM05D009350 ORTHO05D010513 3.1e-18 96.7 133 39.1
CARHR289550 Cardamine hirsuta HOM05D009350 ORTHO05D010513 2.6e-17 93.6 100 47.0
BcaB02g07852 Brassica carinata HOM05D009350 ORTHO05D010513 1.7e-16 90.9 98 44.9
C06p16700 Brassica napus HOM05D009350 ORTHO05D010513 2.2e-16 90.5 103 44.7
BolC6t36869H Brassica oleracea HOM05D009350 ORTHO05D010513 2.2e-16 90.5 103 44.7
BcaC08g44261 Brassica carinata HOM05D009350 ORTHO05D010513 1.1e-15 88.2 103 43.7
BcaC08g44264 Brassica carinata HOM05D009350 ORTHO05D010513 1.1e-15 88.2 103 43.7
BcaC08g44265 Brassica carinata HOM05D009350 ORTHO05D010513 1.1e-15 88.2 103 43.7
BcaC08g44266 Brassica carinata HOM05D009350 ORTHO05D010513 1.1e-15 88.2 103 43.7
BcaC08g44267 Brassica carinata HOM05D009350 ORTHO05D010513 1.1e-15 88.2 103 43.7
C06p16770 Brassica napus HOM05D009350 ORTHO05D010513 1.1e-15 88.2 103 43.7
C06p16790 Brassica napus HOM05D009350 ORTHO05D010513 1.1e-15 88.2 103 43.7
C06p16820 Brassica napus HOM05D009350 ORTHO05D010513 1.1e-15 88.2 103 43.7
BolC6t36876H Brassica oleracea HOM05D009350 ORTHO05D010513 1.1e-15 88.2 103 43.7
BolC6t36877H Brassica oleracea HOM05D009350 ORTHO05D010513 1.1e-15 88.2 103 43.7
BolC6t36880H Brassica oleracea HOM05D009350 ORTHO05D010513 1.1e-15 88.2 103 43.7
A05p16790 Brassica napus HOM05D009350 ORTHO05D010513 1.4e-15 87.8 103 43.7
A05p16800 Brassica napus HOM05D009350 ORTHO05D010513 1.4e-15 87.8 103 43.7
A05p16820 Brassica napus HOM05D009350 ORTHO05D010513 1.4e-15 87.8 103 43.7
A05p16860 Brassica napus HOM05D009350 ORTHO05D010513 1.4e-15 87.8 103 43.7
A05p16870 Brassica napus HOM05D009350 ORTHO05D010513 1.4e-15 87.8 103 43.7
BraA05t20583Z Brassica rapa HOM05D009350 ORTHO05D010513 1.4e-15 87.8 103 43.7
BraA05t20584Z Brassica rapa HOM05D009350 ORTHO05D010513 1.4e-15 87.8 103 43.7
BraA05t20585Z Brassica rapa HOM05D009350 ORTHO05D010513 1.4e-15 87.8 103 43.7
BraA05t20590Z Brassica rapa HOM05D009350 ORTHO05D010513 1.4e-15 87.8 103 43.7
C06p16850 Brassica napus HOM05D009350 ORTHO05D010513 4.2e-15 86.3 103 42.7
BolC6t36881H Brassica oleracea HOM05D009350 ORTHO05D010513 4.2e-15 86.3 103 42.7
Carub.0001s0160 Capsella rubella HOM05D009350 ORTHO05D010513 4.2e-15 86.3 101 41.6
Thhalv10017577m.g Eutrema salsugineum HOM05D007865 ORTHO05D010513 5.5e-15 85.9 143 44.1
THA.LOC104806001 Tarenaya hassleriana HOM05D007865 ORTHO05D010513 5.5e-15 85.9 160 36.9
THA.LOC104806002 Tarenaya hassleriana HOM05D007865 ORTHO05D010513 5.5e-15 85.9 160 36.9
THA.LOC104818129 Tarenaya hassleriana HOM05D007865 ORTHO05D010513 5.5e-15 85.9 160 36.9
BcaB01g03533 Brassica carinata HOM05D009272 ORTHO05D010513 1.3e-13 81.3 94 44.7
CARHR249930 Cardamine hirsuta HOM05D009056 ORTHO05D011508 4.8e-11 72.8 97 41.2
THA.LOC104813384 Tarenaya hassleriana HOM05D007865 ORTHO05D010123 5.3e-10 69.3 99 35.4
Sp6g01800 Schrenkiella parvula HOM05D009056 ORTHO05D011508 3.4e-09 66.6 156 35.3
BcaB05g22473 Brassica carinata HOM05D007865 ORTHO05D010123 1.3e-08 64.7 88 38.6
BcaB05g22474 Brassica carinata HOM05D007865 ORTHO05D010123 1.3e-08 64.7 88 38.6
C02p12900 Brassica napus HOM05D007865 ORTHO05D010123 1.7e-08 64.3 84 39.3
C02p12910 Brassica napus HOM05D007865 ORTHO05D010123 1.7e-08 64.3 84 39.3
Prupe.8G035300 Prunus persica HOM05D000010 ORTHO05D000063 1.7e-08 64.3 99 37.4
BcaC03g14024 Brassica carinata HOM05D007865 ORTHO05D010123 2.9e-08 63.5 107 34.6
BolC2t07362H Brassica oleracea HOM05D007865 ORTHO05D010123 2.9e-08 63.5 107 34.6
SGA_v2.0_scaffold18G08480 Striga asiatica HOM05D000010 ORTHO05D000063 2.9e-08 63.5 103 35.9
A02p07250 Brassica napus HOM05D007865 ORTHO05D010123 3.8e-08 63.2 215 27.0
BraA02t05803Z Brassica rapa HOM05D007865 ORTHO05D010123 3.8e-08 63.2 215 27.0
Nitab4.5_0001225g0120 Nicotiana tabacum HOM05D000010 ORTHO05D000865 5.0e-08 62.8 132 36.4
Carub.0006s3546 Capsella rubella HOM05D009056 ORTHO05D011508 6.5e-08 62.4 98 39.8
BcaC03g14023 Brassica carinata HOM05D007865 ORTHO05D010123 1.1e-07 61.6 90 37.8
BcaC03g14042 Brassica carinata HOM05D007865 ORTHO05D010123 1.1e-07 61.6 90 37.8
A02p07230 Brassica napus HOM05D007865 ORTHO05D010123 1.1e-07 61.6 198 27.8
A02p07240 Brassica napus HOM05D007865 ORTHO05D010123 1.1e-07 61.6 198 27.8
C02p12860 Brassica napus HOM05D007865 ORTHO05D010123 1.1e-07 61.6 90 37.8
BolC2t07361H Brassica oleracea HOM05D007865 ORTHO05D010123 1.1e-07 61.6 90 37.8
BolC2t07382H Brassica oleracea HOM05D007865 ORTHO05D010123 1.1e-07 61.6 90 37.8
BcaB05g22471 Brassica carinata HOM05D007865 ORTHO05D010123 1.4e-07 61.2 80 36.2
A02p07380 Brassica napus HOM05D007865 ORTHO05D010123 1.4e-07 61.2 197 26.4
BraA02t05802Z Brassica rapa HOM05D007865 ORTHO05D010123 1.4e-07 61.2 90 37.8
BraA02t05817Z Brassica rapa HOM05D007865 ORTHO05D010123 1.4e-07 61.2 197 26.4
MD10G1030400 Malus domestica HOM05D000010 ORTHO05D000063 1.4e-07 61.2 99 35.4
BcaC03g14047 Brassica carinata HOM05D007865 ORTHO05D010123 1.9e-07 60.8 197 26.4
BolC2t07384H Brassica oleracea HOM05D007865 ORTHO05D010123 1.9e-07 60.8 197 26.4
SGA_v2.0_scaffold44G16859 Striga asiatica HOM05D000010 ORTHO05D000063 1.9e-07 60.8 107 33.6
BcaB01g02097 Brassica carinata HOM05D009056 ORTHO05D011508 2.5e-07 60.5 154 31.8
BcaC03g14051 Brassica carinata HOM05D007865 ORTHO05D010123 2.5e-07 60.5 90 37.8
BcaC03g14053 Brassica carinata HOM05D007865 ORTHO05D010123 2.5e-07 60.5 197 26.4
BolC2t07395H Brassica oleracea HOM05D007865 ORTHO05D010123 2.5e-07 60.5 197 26.4
COL.COLO4_25406 Corchorus olitorius HOM05D000010 ORTHO05D025143 2.5e-07 60.5 98 32.7
C02p12890 Brassica napus HOM05D007865 ORTHO05D010123 3.2e-07 60.1 100 35.0
BraA02t05804Z Brassica rapa HOM05D007865 ORTHO05D010123 3.2e-07 60.1 90 37.8
Duzib068G0334 Durio zibethinus HOM05D000010 ORTHO05D000063 3.2e-07 60.1 103 32.0
AT1G19040 Arabidopsis thaliana HOM05D010973 ORTHO05D031456 4.2e-07 59.7 77 36.4
COL.COLO4_14385 Corchorus olitorius HOM05D000617 ORTHO05D000478 4.2e-07 59.7 103 32.0
Thhalv10015599m.g Eutrema salsugineum HOM05D007865 ORTHO05D010123 4.2e-07 59.7 95 33.7
BcaC03g14044 Brassica carinata HOM05D007865 ORTHO05D010123 5.5e-07 59.3 197 26.9
BolC2t07386H Brassica oleracea HOM05D007865 ORTHO05D010123 5.5e-07 59.3 197 26.9
Carub.0006s1626 Capsella rubella HOM05D007865 ORTHO05D010123 5.5e-07 59.3 103 36.9
QL09p006487 Quercus lobata HOM05D000010 ORTHO05D000063 5.5e-07 59.3 103 34.0
AL4G20480 Arabidopsis lyrata HOM05D014137 ORTHO05D010123 7.2e-07 58.9 105 35.2
BolC9t53085H Brassica oleracea HOM05D009056 ORTHO05D011508 7.2e-07 58.9 149 31.5
Sp2g22790 Schrenkiella parvula HOM05D000010 ORTHO05D000063 7.2e-07 58.9 103 34.0
Thecc.06G072100 Theobroma cacao HOM05D000010 ORTHO05D000063 7.2e-07 58.9 71 42.3
TPR.G18282 Trifolium pratense HOM05D000010 ORTHO05D000151 7.2e-07 58.9 119 32.8
C02p12610 Brassica napus HOM05D007865 ORTHO05D010123 9.3e-07 58.5 72 41.7
COL.COLO4_18882 Corchorus olitorius HOM05D000010 ORTHO05D025143 9.3e-07 58.5 98 31.6
MD05G1029800 Malus domestica HOM05D000010 ORTHO05D000063 9.3e-07 58.5 69 43.5
AL8G35160 Arabidopsis lyrata HOM05D007865 ORTHO05D010123 1.2e-06 58.2 171 27.5
BcaC04g24060 Brassica carinata HOM05D009056 ORTHO05D011508 1.2e-06 58.2 149 31.5
BcaNung02010 Brassica carinata HOM05D000010 ORTHO05D000063 1.2e-06 58.2 102 33.3
A09p01390 Brassica napus HOM05D009056 ORTHO05D027233 1.2e-06 58.2 128 35.2
C09p01500 Brassica napus HOM05D009056 ORTHO05D011508 1.2e-06 58.2 149 31.5
BolC7t44838H Brassica oleracea HOM05D000010 ORTHO05D000063 1.2e-06 58.2 102 33.3
BraA09t35803Z Brassica rapa HOM05D009056 ORTHO05D027233 1.2e-06 58.2 128 35.2
Thhalv10029188m.g Eutrema salsugineum HOM05D009056 ORTHO05D011508 1.2e-06 58.2 150 31.3
Gohir.D11G016700 Gossypium hirsutum HOM05D000010 ORTHO05D000063 1.2e-06 58.2 103 32.0
Actinidia24225 Actinidia chinensis HOM05D000010 ORTHO05D002079 1.6e-06 57.8 74 39.2
C02p12920 Brassica napus HOM05D007865 ORTHO05D010123 1.6e-06 57.8 95 35.8
CiPaw.01G116900 Carya illinoinensis HOM05D007865 ORTHO05D011589 1.6e-06 57.8 113 38.9
Gorai.007G017500 Gossypium raimondii HOM05D000010 ORTHO05D000063 1.6e-06 57.8 103 32.0
QL02p098785 Quercus lobata HOM05D000010 ORTHO05D000063 1.6e-06 57.8 107 31.8
AL4G20500 Arabidopsis lyrata HOM05D007865 ORTHO05D010123 2.1e-06 57.4 103 35.0
A09p01400 Brassica napus HOM05D009056 ORTHO05D011508 2.1e-06 57.4 153 31.4
A09p06430 Brassica napus HOM05D000010 ORTHO05D000063 2.1e-06 57.4 102 33.3
BraA09t35804Z Brassica rapa HOM05D009056 ORTHO05D011508 2.1e-06 57.4 153 31.4
BraA09t36286Z Brassica rapa HOM05D000010 ORTHO05D000063 2.1e-06 57.4 102 33.3
Duzib084G1090 Durio zibethinus HOM05D000010 ORTHO05D000063 2.1e-06 57.4 103 32.0
Duzib205G2011 Durio zibethinus HOM05D000010 ORTHO05D000063 2.1e-06 57.4 103 32.0
Gorai.004G125900 Gossypium raimondii HOM05D000010 ORTHO05D000063 2.1e-06 57.4 103 31.1
PGR102G1408 Punica granatum HOM05D000010 ORTHO05D000063 2.1e-06 57.4 106 31.1
PGR142G0341 Punica granatum HOM05D000010 ORTHO05D000063 2.1e-06 57.4 102 33.3
TAR629G2610 Trochodendron aralioides HOM05D000010 ORTHO05D000063 2.1e-06 57.4 100 39.0
A06p35380 Brassica napus HOM05D000010 ORTHO05D000063 2.7e-06 57.0 102 33.3
BraA06t26462Z Brassica rapa HOM05D000010 ORTHO05D000063 2.7e-06 57.0 102 33.3
Gohir.A11G016900 Gossypium hirsutum HOM05D000010 ORTHO05D000063 2.7e-06 57.0 103 32.0
Gohir.D08G117200 Gossypium hirsutum HOM05D000010 ORTHO05D000063 2.7e-06 57.0 103 31.1
Lalb_Chr06g0169951 Lupinus albus HOM05D000010 ORTHO05D000063 2.7e-06 57.0 99 33.3
Medtr1g090723 Medicago truncatula HOM05D000010 ORTHO05D000063 2.7e-06 57.0 105 30.5
Hund09727 Selenicereus undatus HOM05D000010 ORTHO05D000063 2.7e-06 57.0 104 35.6
vmacro03325 Vaccinium macrocarpon HOM05D000010 ORTHO05D002079 2.7e-06 57.0 75 37.3
BcaB01g00701 Brassica carinata HOM05D000010 ORTHO05D000063 3.5e-06 56.6 151 31.1
QL09p006617 Quercus lobata HOM05D000010 ORTHO05D337328 3.5e-06 56.6 118 31.4
QL09p006632 Quercus lobata HOM05D000010 ORTHO05D337432 3.5e-06 56.6 118 31.4
Thecc.03G210700 Theobroma cacao HOM05D000010 ORTHO05D000063 3.5e-06 56.6 103 32.0
GSVIVG01027475001 Vitis vinifera HOM05D000010 ORTHO05D439276 3.5e-06 56.6 105 30.5
AT3G49530 Arabidopsis thaliana HOM05D000010 ORTHO05D000063 4.6e-06 56.2 105 34.3
AT5G24590 Arabidopsis thaliana HOM05D000010 ORTHO05D000063 4.6e-06 56.2 102 35.3
C07p43120 Brassica napus HOM05D000010 ORTHO05D000063 4.6e-06 56.2 102 32.4
BraA02t04811Z Brassica rapa HOM05D000010 ORTHO05D000063 4.6e-06 56.2 192 26.6
BraA03t12330Z Brassica rapa HOM05D009056 ORTHO05D011508 4.6e-06 56.2 146 26.7
CARHR188860 Cardamine hirsuta HOM05D000010 ORTHO05D000063 4.6e-06 56.2 103 34.0
AUR62005966 Chenopodium quinoa HOM05D000010 ORTHO05D000063 4.6e-06 56.2 102 35.3
Gohir.D09G181800 Gossypium hirsutum HOM05D000010 ORTHO05D000063 4.6e-06 56.2 103 31.1
Gorai.006G203800 Gossypium raimondii HOM05D000010 ORTHO05D000063 4.6e-06 56.2 103 31.1
Prupe.6G098600 Prunus persica HOM05D000010 ORTHO05D000151 4.6e-06 56.2 114 30.7
Rhsim09G0210500 Rhododendron simsii HOM05D000010 ORTHO05D000063 4.6e-06 56.2 100 36.0
RcHm_v2.0_Chr1g0383091 Rosa chinensis HOM05D000010 ORTHO05D000063 4.6e-06 56.2 102 32.4
SEGI_14250 Sequoiadendron giganteum HOM05D000010 ORTHO05D003912 4.6e-06 56.2 105 36.2
Carub.0008s1968 Capsella rubella HOM05D007865 ORTHO05D010123 6.1e-06 55.8 102 33.3
Carub.0008s1992 Capsella rubella HOM05D007865 ORTHO05D010123 6.1e-06 55.8 102 33.3
CARHR208900 Cardamine hirsuta HOM05D000010 ORTHO05D000063 6.1e-06 55.8 102 34.3
AUR62028103 Chenopodium quinoa HOM05D000010 ORTHO05D000063 6.1e-06 55.8 100 36.0
Ciclev10019368m.g Citrus clementina HOM05D000010 ORTHO05D000063 6.1e-06 55.8 103 32.0
Gorai.008G197500 Gossypium raimondii HOM05D000010 ORTHO05D011092 6.1e-06 55.8 101 35.6
Nitab4.5_0001135g0030 Nicotiana tabacum HOM05D000010 ORTHO05D005236 6.1e-06 55.8 177 27.7
QL09p006580 Quercus lobata HOM05D000010 ORTHO05D337649 6.1e-06 55.8 113 31.0
Carub.0006s2245 Capsella rubella HOM05D000010 ORTHO05D000063 7.9e-06 55.5 102 34.3
Gohir.D12G184200 Gossypium hirsutum HOM05D000010 ORTHO05D011092 7.9e-06 55.5 101 35.6
SHI02285 Sapria himalayana HOM05D000010 ORTHO05D000063 7.9e-06 55.5 102 35.3
THA.LOC104816444 Tarenaya hassleriana HOM05D000010 ORTHO05D000063 7.9e-06 55.5 102 33.3
THA.LOC104823200 Tarenaya hassleriana HOM05D000010 ORTHO05D000063 7.9e-06 55.5 102 33.3


User provided reference genes

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