Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 0.0e+00 1313.9 693 100.0
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 0.0e+00 1209.1 702 92.5
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 0.0e+00 1190.6 705 90.6
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 0.0e+00 1159.4 705 87.8
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 0.0e+00 1155.6 697 89.1
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 0.0e+00 1140.9 688 87.8
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 0.0e+00 1137.9 697 87.9
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 0.0e+00 1135.6 688 87.5
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 0.0e+00 1127.9 686 86.7
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 0.0e+00 1127.9 686 86.7
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 6.8e-309 1063.5 706 81.7
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 6.0e-281 970.7 706 74.5
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 1.9e-226 789.6 693 62.8
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 5.1e-224 781.6 706 61.2
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 8.5e-219 764.2 665 63.0
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 3.2e-218 762.3 705 59.1
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 1.3e-214 750.4 682 60.4
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 5.3e-213 745.0 679 60.2
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 1.3e-211 740.3 675 60.0
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 2.9e-211 739.2 716 58.2
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 6.5e-211 738.0 687 59.1
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 1.9e-210 736.5 685 60.7
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 2.5e-210 736.1 708 59.2
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 5.5e-210 734.9 706 59.2
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 7.2e-210 734.6 640 62.5
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 9.4e-210 734.2 672 59.5
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 9.4e-210 734.2 686 59.3
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 1.6e-209 733.4 692 58.4
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 1.6e-209 733.4 695 58.0
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 3.9e-208 728.8 701 59.1
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 6.7e-208 728.0 694 59.1
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 4.4e-207 725.3 666 61.0
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 1.7e-206 723.4 703 58.7
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 2.2e-206 723.0 666 59.3
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 6.3e-206 721.5 707 58.7
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 2.4e-205 719.5 711 56.7
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 1.2e-204 717.2 683 58.0
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 1.6e-204 716.8 687 57.8
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 1.6e-204 716.8 674 58.5
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 7.7e-204 714.5 643 60.2
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 7.7e-204 714.5 701 57.2
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 2.9e-203 712.6 658 59.0
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 8.5e-203 711.1 709 55.6
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 1.1e-202 710.7 686 57.6
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 1.5e-202 710.3 641 59.4
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 5.5e-202 708.4 667 58.9
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 7.2e-202 708.0 700 57.3
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 7.2e-202 708.0 696 57.8
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 9.4e-202 707.6 700 57.1
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 1.6e-201 706.8 645 59.7
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 2.7e-201 706.1 695 57.3
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 4.7e-201 705.3 663 58.5
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 4.0e-200 702.2 694 56.8
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 1.5e-199 700.3 695 56.8
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 2.0e-199 699.9 691 56.3
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 3.3e-199 699.1 707 56.2
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 4.4e-199 698.7 652 57.5
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 7.5e-199 698.0 709 55.4
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 2.2e-198 696.4 666 58.3
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 6.3e-198 694.9 673 57.9
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 1.1e-197 694.1 698 55.9
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 9.1e-197 691.0 637 59.3
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 1.2e-196 690.6 707 54.9
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 2.9e-195 686.0 642 57.6
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 3.2e-194 682.6 697 55.2
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 5.5e-194 681.8 661 57.8
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 7.2e-194 681.4 652 56.6
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 2.1e-193 679.9 642 57.3
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 2.7e-193 679.5 701 55.2
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 5.2e-192 675.2 687 55.3
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 4.4e-191 672.2 654 55.8
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 1.7e-190 670.2 671 55.1
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 2.2e-190 669.8 702 54.8
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 4.8e-190 668.7 670 56.4
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 1.1e-189 667.5 663 57.5
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 1.4e-189 667.2 664 55.9
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 5.4e-189 665.2 679 56.0
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 3.5e-188 662.5 689 53.3
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 3.3e-186 656.0 638 56.4
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 5.5e-186 655.2 682 54.8
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 5.2e-184 648.7 663 54.3
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 2.0e-183 646.7 671 53.8
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 3.4e-183 646.0 708 53.7
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 2.2e-182 643.3 704 53.4
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 2.4e-181 639.8 656 54.4
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 2.0e-180 636.7 651 54.1
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 9.8e-175 617.8 700 52.4
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 3.7e-174 615.9 643 55.5
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 3.5e-172 609.4 713 50.5
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 7.8e-172 608.2 699 52.1
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 7.3e-170 601.7 702 49.4
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.2e-161 574.3 689 48.5
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 4.7e-161 572.4 527 59.6
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 2.4e-157 560.1 582 53.1
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.7e-150 537.3 664 48.2
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 3.6e-137 493.0 664 43.8
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 2.9e-134 483.4 649 43.6
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 3.5e-132 476.5 670 40.7
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 8.7e-131 471.9 682 41.6
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 6.5e-126 455.7 467 55.2
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 1.1e-125 454.9 470 54.7
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 2.5e-125 453.8 393 60.3
Sabra02G0043400 Salix brachista HOM05D005096 ORTHO05D006566 9.3e-125 451.8 569 49.7
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 1.2e-119 434.9 349 64.5
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 4.8e-113 412.9 330 64.2
SMO147G0152 Selaginella moellendorffii HOM05D005096 ORTHO05D006566 1.7e-110 404.4 631 41.0
PRCOL_00001755 Prasinoderma coloniale HOM05D005096 ORTHO05D006566 8.8e-99 365.5 654 37.2
MELO3C014400.2 Cucumis melo HOM05D005096 ORTHO05D008790 6.3e-97 359.4 418 52.4
Hund05386 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.0e-94 352.1 405 52.8
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 1.7e-86 324.7 713 32.7
CBR_g4009 Chara braunii HOM05D005096 ORTHO05D006566 5.5e-85 319.7 678 36.1
MELO3C014401.2 Cucumis melo HOM05D005096 ORTHO05D006566 4.4e-82 310.1 256 63.7
MCO02G198 Micromonas commoda HOM05D005096 ORTHO05D006566 4.8e-81 306.6 623 34.3
AUR62043138 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.0e-75 288.9 448 42.4
Cpa.g.c38803 Carica papaya HOM05D005096 ORTHO05D006566 4.0e-75 287.0 268 57.5
Cpa.g.c40412 Carica papaya HOM05D005096 ORTHO05D006566 4.1e-72 276.9 221 67.0
Lalb_Chr02g0142771 Lupinus albus HOM05D005096 ORTHO05D006566 1.2e-71 275.4 325 51.1
Cpa.g.sc52.38 Carica papaya HOM05D005096 ORTHO05D006566 9.5e-69 265.8 221 66.1
Potri.002G053332 Populus trichocarpa HOM05D005096 ORTHO05D006566 1.2e-66 258.8 256 57.0
Migut.D00341 Erythranthe guttata HOM05D005096 ORTHO05D006566 6.6e-62 243.0 450 39.8
Hund05340 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.0e-59 235.7 180 66.7
AUR62043139 Chenopodium quinoa HOM05D005096 ORTHO05D006566 6.0e-55 219.9 221 53.8
MD11G1311400 Malus domestica HOM05D005096 ORTHO05D006566 1.1e-51 209.1 377 39.3
SEGI_14404 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.1e-45 189.1 332 38.0
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 2.3e-38 164.9 177 49.7
Cpa.g.sc370.1 Carica papaya HOM05D005096 ORTHO05D006566 8.7e-30 136.3 158 55.1
Glyma.18G167550 Glycine max HOM05D005096 ORTHO05D006566 4.8e-28 130.6 95 72.6
PGSC0003DMG400012881 Solanum tuberosum HOM05D005096 ORTHO05D006566 9.3e-24 116.3 163 47.2
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 1.7e-17 95.5 95 57.9
arahy.Tifrunner.gnm1.ann1.BB9JSJ Arachis hypogaea HOM05D000384 ORTHO05D000468 5.5e-16 90.5 92 55.4
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 1.0e-14 86.3 153 41.2
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 6.7e-14 83.6 176 38.1
MD11G1311300 Malus domestica HOM05D005096 ORTHO05D006566 2.5e-13 81.6 68 61.8
SEGI_24308 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.3e-12 79.3 48 75.0


User provided reference genes

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