Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 4.6e-177 624.4 302 100.0
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 1.5e-156 556.2 302 88.7
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 5.1e-152 541.2 302 87.1
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 5.1e-152 541.2 302 87.1
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 4.3e-151 538.1 305 86.2
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 1.6e-150 536.2 305 86.2
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 6.2e-150 534.3 302 85.8
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 4.5e-148 528.1 325 80.6
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 7.1e-146 520.8 303 84.2
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 1.3e-144 516.5 300 83.0
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 9.6e-135 483.8 304 78.6
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 1.1e-130 470.3 232 97.8
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 4.1e-125 451.8 323 73.1
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 1.8e-120 436.4 313 68.1
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 3.0e-120 435.6 315 67.0
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 3.7e-118 428.7 311 68.8
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 4.1e-117 425.2 314 65.6
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 9.1e-117 424.1 317 67.2
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 5.9e-116 421.4 314 65.6
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 7.7e-116 421.0 252 76.2
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 1.7e-115 419.9 246 78.0
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 1.7e-115 419.9 246 76.8
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 5.0e-115 418.3 248 77.4
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 8.5e-115 417.5 246 76.4
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 1.9e-114 416.4 309 68.3
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 1.0e-112 410.6 248 76.6
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 1.8e-112 409.8 250 74.4
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 2.3e-112 409.5 332 67.5
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 3.0e-112 409.1 256 73.4
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 3.0e-112 409.1 306 64.4
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 1.5e-111 406.8 232 79.7
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 1.5e-111 406.8 232 79.7
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 2.6e-111 406.0 266 71.1
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 3.3e-111 405.6 248 73.4
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 7.4e-111 404.4 248 74.2
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 2.8e-110 402.5 248 73.4
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 2.8e-110 402.5 315 61.0
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 3.7e-110 402.1 248 74.6
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 6.3e-110 401.4 313 61.3
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 8.2e-110 401.0 247 73.3
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 1.4e-109 400.2 313 61.7
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 1.8e-109 399.8 248 73.4
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 1.8e-109 399.8 260 70.8
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 2.4e-109 399.4 311 64.0
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 3.1e-109 399.1 298 66.8
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 3.1e-109 399.1 298 62.8
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 7.0e-109 397.9 246 74.4
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 9.1e-109 397.5 256 71.5
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 9.1e-109 397.5 313 61.7
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 2.6e-108 396.0 260 69.6
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 4.5e-108 395.2 317 64.0
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 4.5e-108 395.2 247 73.7
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 4.5e-108 395.2 246 74.4
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 2.9e-107 392.5 310 62.6
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 3.8e-107 392.1 249 69.1
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 5.0e-107 391.7 281 66.5
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 1.5e-106 390.2 313 60.1
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 2.5e-106 389.4 246 72.4
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 9.4e-106 387.5 243 73.7
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 1.6e-105 386.7 311 63.7
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 2.7e-105 386.0 311 61.4
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 3.0e-104 382.5 306 63.4
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 4.0e-104 382.1 314 58.3
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 2.0e-103 379.8 261 65.1
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 2.6e-103 379.4 289 62.6
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 1.3e-102 377.1 285 66.3
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 1.7e-102 376.7 263 65.4
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 2.2e-102 376.3 259 69.1
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 2.8e-102 375.9 307 60.3
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 2.8e-102 375.9 257 66.5
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 1.1e-101 374.0 262 66.0
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.2e-100 370.5 254 68.5
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.2e-100 370.5 254 68.5
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 1.6e-100 370.2 310 60.0
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 2.0e-100 369.8 230 75.2
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 3.5e-100 369.0 289 61.6
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 1.3e-99 367.1 262 67.9
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 1.9e-98 363.2 269 63.9
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 4.7e-97 358.6 274 61.3
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 1.0e-96 357.5 250 67.2
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 6.8e-96 354.8 250 66.4
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 2.0e-95 353.2 261 63.6
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 7.5e-95 351.3 250 68.0
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 9.8e-95 350.9 261 62.5
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 3.7e-94 349.0 207 76.8
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 3.1e-93 345.9 207 76.3
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 1.0e-91 340.9 258 60.9
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 2.2e-91 339.7 256 62.9
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 6.5e-91 338.2 208 73.6
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 1.9e-90 336.7 247 62.8
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 2.6e-87 326.2 262 61.5
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 4.5e-84 315.5 245 62.4
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 2.5e-82 309.7 246 62.2
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 8.3e-78 294.7 257 56.8
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 1.2e-76 290.8 203 68.0
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 5.9e-76 288.5 248 57.7
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 8.9e-72 274.6 248 56.5
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 9.8e-71 271.2 206 63.6
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 2.2e-70 270.0 182 75.8
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 2.2e-70 270.0 175 69.1
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 4.9e-70 268.9 149 81.9
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 3.0e-67 259.6 166 67.5
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 8.9e-64 248.1 177 67.2
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 4.0e-56 222.6 173 61.3
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 5.8e-55 218.8 269 43.1
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 3.4e-47 193.0 244 44.3
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 7.1e-45 185.3 157 60.5
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 3.3e-42 176.4 199 47.7
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 3.4e-39 166.4 167 54.5
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 4.3e-34 149.4 107 61.7
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 1.4e-32 144.4 99 68.7
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 1.1e-29 134.8 98 65.3
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 8.7e-27 125.2 122 49.2
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 3.3e-26 123.2 94 62.8
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 1.6e-25 120.9 118 53.4
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 2.1e-25 120.6 118 54.2
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 3.1e-24 116.7 150 40.7
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 2.0e-23 114.0 178 37.1
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 3.4e-23 113.2 63 81.0
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 1.2e-20 104.8 158 39.2
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 2.1e-20 104.0 147 40.1
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 6.3e-17 92.4 57 73.7
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 7.6e-15 85.5 200 31.0
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 4.3e-10 69.7 116 37.1
SHI04506 Sapria himalayana HOM05D006249 ORTHO05D007643 7.4e-10 68.9 118 34.7
SHI34501 Sapria himalayana HOM05D006249 ORTHO05D007643 1.3e-09 68.2 95 42.1
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 2.8e-09 67.0 115 35.7
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 2.8e-09 67.0 57 50.9
SHI31647 Sapria himalayana HOM05D006249 ORTHO05D007643 1.8e-08 64.3 53 54.7
GSVIVG01032376001 Vitis vinifera HOM05D001287 ORTHO05D001226 5.3e-08 62.8 231 24.2
SHI27267 Sapria himalayana HOM05D000624 ORTHO05D000495 1.2e-07 61.6 56 53.6
SHI49503 Sapria himalayana HOM05D000624 ORTHO05D000495 1.2e-07 61.6 50 62.0
SEGI_29111 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 3.4e-07 60.1 40 67.5
Duzib084G0620 Durio zibethinus HOM05D001287 ORTHO05D001226 7.7e-07 58.9 170 27.6
SHI41947 Sapria himalayana HOM05D000624 ORTHO05D000495 1.7e-06 57.8 50 58.0
Cre16.g681850 Chlamydomonas reinhardtii HOM05D001287 ORTHO05D001226 2.2e-06 57.4 203 25.6
SHI43714 Sapria himalayana HOM05D000624 ORTHO05D007643 2.2e-06 57.4 49 59.2
SHI49364 Sapria himalayana HOM05D000624 ORTHO05D000495 2.2e-06 57.4 50 60.0
SHI45616 Sapria himalayana HOM05D000624 ORTHO05D000495 3.8e-06 56.6 50 58.0
SHI54291 Sapria himalayana HOM05D006249 ORTHO05D007643 5.0e-06 56.2 53 49.1


User provided reference genes

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