Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G02870 Arabidopsis thaliana HOM05D006871 ORTHO05D008544 2.1e-106 389.0 194 100.0
AL1G12280 Arabidopsis lyrata HOM05D006871 ORTHO05D008544 1.4e-102 376.3 192 96.9
Sp1g01860 Schrenkiella parvula HOM05D006871 ORTHO05D008544 5.3e-102 374.4 192 95.8
BcaC05g24587 Brassica carinata HOM05D006871 ORTHO05D008544 5.8e-101 370.9 192 94.3
C05p01490 Brassica napus HOM05D006871 ORTHO05D008544 5.8e-101 370.9 192 94.3
BolC5t28931H Brassica oleracea HOM05D006871 ORTHO05D008544 1.7e-100 369.4 192 93.8
BraA10t42428Z Brassica rapa HOM05D006871 ORTHO05D008544 1.7e-100 369.4 192 93.8
Thhalv10008837m.g Eutrema salsugineum HOM05D006871 ORTHO05D008544 1.7e-100 369.4 192 94.3
A10p01520 Brassica napus HOM05D006871 ORTHO05D008544 8.4e-100 367.1 192 93.2
BcaB03g15758 Brassica carinata HOM05D006871 ORTHO05D008544 1.9e-99 365.9 193 94.3
CARHR002210 Cardamine hirsuta HOM05D006871 ORTHO05D008544 1.2e-98 363.2 192 92.2
Carub.0001s0199 Capsella rubella HOM05D006871 ORTHO05D008544 8.7e-97 357.1 192 93.2
C08p00260 Brassica napus HOM05D006871 ORTHO05D008544 8.2e-95 350.5 194 90.7
BolC8t46828H Brassica oleracea HOM05D006871 ORTHO05D008544 1.8e-94 349.4 194 90.2
Aa31LG1G9720 Aethionema arabicum HOM05D006871 ORTHO05D008544 1.3e-92 343.2 192 87.5
THA.LOC104815930 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 2.1e-82 309.3 192 76.0
THA.LOC104801274 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 8.8e-81 303.9 193 72.5
Cpa.g.sc9.224 Carica papaya HOM05D000121 ORTHO05D000102 2.6e-72 275.8 199 66.8
BcaC07g36990 Brassica carinata HOM05D006871 ORTHO05D008544 7.5e-72 274.2 154 87.7
Cfa005931 Carpinus fangiana HOM05D006871 ORTHO05D008544 3.7e-71 271.9 196 67.3
CSS0035923 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 4.8e-71 271.6 192 65.6
Haze_04913 Corylus avellana HOM05D006871 ORTHO05D008544 8.2e-71 270.8 196 66.8
vmacro02459 Vaccinium macrocarpon HOM05D006871 ORTHO05D008544 8.2e-71 270.8 192 66.1
Potri.014G130400 Populus trichocarpa HOM05D006871 ORTHO05D008544 1.1e-70 270.4 193 68.9
CSS0020652 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 2.4e-70 269.2 192 65.1
Sabra14G0097000 Salix brachista HOM05D006871 ORTHO05D008544 2.4e-70 269.2 193 68.4
Atru.chr5.1162 Acer truncatum HOM05D006871 ORTHO05D008544 7.0e-70 267.7 193 65.3
PGR119G1195 Punica granatum HOM05D006871 ORTHO05D008544 1.6e-69 266.5 199 64.3
PGR119G1688 Punica granatum HOM05D006871 ORTHO05D008544 1.6e-69 266.5 199 64.3
Ciclev10022428m.g Citrus clementina HOM05D006871 ORTHO05D008544 5.9e-69 264.6 193 66.8
Manes.05G063100 Manihot esculenta HOM05D006871 ORTHO05D008544 5.9e-69 264.6 194 66.5
Sc05g0003970 Simmondsia chinensis HOM05D006871 ORTHO05D008544 7.7e-69 264.2 193 66.3
Dinv33046 Davidia involucrata HOM05D006871 ORTHO05D008544 1.0e-68 263.8 193 65.8
Rhsim13G0011300 Rhododendron simsii HOM05D000121 ORTHO05D000102 1.7e-68 263.1 190 66.3
TAR633G1007 Trochodendron aralioides HOM05D006871 ORTHO05D008544 3.8e-68 261.9 193 64.8
Gohir.A08G101400 Gossypium hirsutum HOM05D006871 ORTHO05D008544 5.0e-68 261.5 195 65.6
Gohir.D08G084900 Gossypium hirsutum HOM05D006871 ORTHO05D008544 1.1e-67 260.4 195 65.6
TWI14G0013 Tripterygium wilfordii HOM05D006871 ORTHO05D008544 1.9e-67 259.6 192 68.8
EL10Ac7g17459 Beta vulgaris HOM05D006871 ORTHO05D008544 3.2e-67 258.8 193 65.3
Duzib133G1442 Durio zibethinus HOM05D006871 ORTHO05D008544 3.2e-67 258.8 194 66.0
Lsat_1_v5_gn_8_53460 Lactuca sativa HOM05D006871 ORTHO05D008544 4.2e-67 258.5 192 66.7
GSVIVG01027991001 Vitis vinifera HOM05D006871 ORTHO05D008544 5.5e-67 258.1 196 63.8
CANSAT25G1157 Cannabis sativa HOM05D006871 ORTHO05D008544 1.2e-66 256.9 197 66.0
CANSAT25G3267 Cannabis sativa HOM05D006871 ORTHO05D008544 1.2e-66 256.9 197 66.0
SGA_v2.0_scaffold1G00373 Striga asiatica HOM05D001198 ORTHO05D008544 2.1e-66 256.1 192 64.1
Duzib138G1907 Durio zibethinus HOM05D006871 ORTHO05D008544 4.7e-66 255.0 194 63.9
CiPaw.07G107300 Carya illinoinensis HOM05D006871 ORTHO05D008544 6.1e-66 254.6 193 64.8
Nitab4.5_0002469g0070 Nicotiana tabacum HOM05D006871 ORTHO05D008544 6.1e-66 254.6 193 66.3
SalBow3G3208 Salvia bowleyana HOM05D006871 ORTHO05D008544 8.0e-66 254.2 192 65.1
Thecc.01G298700 Theobroma cacao HOM05D006871 ORTHO05D008544 8.0e-66 254.2 194 64.9
COL.COLO4_23360 Corchorus olitorius HOM05D006871 ORTHO05D008544 1.0e-65 253.8 188 67.0
Hma1.2p1_0491F.1_g164460 Hydrangea macrophylla HOM05D006871 ORTHO05D008544 1.0e-65 253.8 190 65.3
Nitab4.5_0011307g0010 Nicotiana tabacum HOM05D006871 ORTHO05D008544 1.8e-65 253.1 193 64.8
Actinidia32224 Actinidia chinensis HOM05D006871 ORTHO05D008544 2.3e-65 252.7 192 63.5
Sed0022553 Sechium edule HOM05D006871 ORTHO05D008544 4.0e-65 251.9 195 64.6
Migut.D00207 Erythranthe guttata HOM05D006871 ORTHO05D008544 5.2e-65 251.5 192 64.1
Oeu032105.1 Olea europaea HOM05D006871 ORTHO05D008544 5.2e-65 251.5 192 64.6
Prupe.8G259900 Prunus persica HOM05D006871 ORTHO05D008544 8.8e-65 250.8 195 64.1
HanXRQChr06g0163831 Helianthus annuus HOM05D006871 ORTHO05D008544 1.5e-64 250.0 193 66.3
MSTRG.18162 Avicennia marina HOM05D006871 ORTHO05D008544 3.4e-64 248.8 192 62.0
ClCG09G005940 Citrullus lanatus HOM05D006871 ORTHO05D008544 3.4e-64 248.8 195 63.1
Cc09_g05510 Coffea canephora HOM05D006871 ORTHO05D008544 3.4e-64 248.8 191 65.4
Solyc09g075030.3 Solanum lycopersicum HOM05D006871 ORTHO05D008544 3.4e-64 248.8 197 65.0
Sopen09g029850 Solanum pennellii HOM05D006871 ORTHO05D008544 3.4e-64 248.8 197 65.5
PGSC0003DMG400011375 Solanum tuberosum HOM05D006871 ORTHO05D008544 4.4e-64 248.4 196 65.3
Lj2A1192T47 Lonicera japonica HOM05D006871 ORTHO05D008544 5.7e-64 248.1 193 64.8
AUR62033118 Chenopodium quinoa HOM05D006871 ORTHO05D008544 7.5e-64 247.7 192 64.1
MD11G1313700 Malus domestica HOM05D006871 ORTHO05D008544 9.8e-64 247.3 197 60.9
MELO3C016009.2 Cucumis melo HOM05D006871 ORTHO05D008544 1.3e-63 246.9 196 62.8
Hund18131 Selenicereus undatus HOM05D006871 ORTHO05D008544 1.3e-63 246.9 232 56.0
Actinidia24342 Actinidia chinensis HOM05D006871 ORTHO05D008544 2.2e-63 246.1 192 61.5
CsaV3_7G029180 Cucumis sativus L. HOM05D006871 ORTHO05D008544 2.2e-63 246.1 197 61.9
Eucgr.H01153 Eucalyptus grandis HOM05D006871 ORTHO05D008544 2.2e-63 246.1 205 61.5
Gorai.004G089300 Gossypium raimondii HOM05D006871 ORTHO05D008544 6.3e-63 244.6 228 56.1
Aqoxy5G00741 Aquilegia oxysepala HOM05D006871 ORTHO05D008544 8.3e-63 244.2 193 64.8
ECA236G5112 Erigeron canadensis HOM05D006871 ORTHO05D008544 8.3e-63 244.2 193 64.2
unitig_0.g659 Utricularia gibba HOM05D006871 ORTHO05D008544 8.3e-63 244.2 193 60.6
Lalb_Chr18g0047051 Lupinus albus HOM05D006871 ORTHO05D008544 1.8e-62 243.0 195 62.1
Peaxi162Scf00001g00482 Petunia axillaris HOM05D006871 ORTHO05D008544 3.5e-61 238.8 195 62.6
QL12p027406 Quercus lobata HOM05D006871 ORTHO05D008544 3.5e-61 238.8 182 65.9
RcHm_v2.0_Chr6g0293791 Rosa chinensis HOM05D006871 ORTHO05D008544 1.3e-60 236.9 197 60.4
PSO210G5360 Papaver somniferum HOM05D006871 ORTHO05D008544 2.9e-60 235.7 194 59.8
PSO832G2873 Papaver somniferum HOM05D006871 ORTHO05D008544 2.9e-60 235.7 194 59.8
CAN.G339.16 Capsicum annuum HOM05D006871 ORTHO05D008544 5.5e-59 231.5 187 65.2
CiPaw.08G096300 Carya illinoinensis HOM05D006871 ORTHO05D008544 2.1e-58 229.6 190 61.6
arahy.Tifrunner.gnm1.ann1.KXN2DA Arachis hypogaea HOM05D006871 ORTHO05D008544 1.5e-56 223.4 193 59.6
arahy.Tifrunner.gnm1.ann1.K3SJ5I Arachis hypogaea HOM05D006871 ORTHO05D008544 2.6e-56 222.6 193 59.1
ATR0796G034 Amborella trichopoda HOM05D006871 ORTHO05D008544 3.4e-56 222.2 193 59.1
CDE05G0468 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 4.1e-54 215.3 191 56.5
AUR62008650 Chenopodium quinoa HOM05D006871 ORTHO05D008544 7.0e-54 214.5 275 45.5
FvH4_2g25580 Fragaria vesca HOM05D006871 ORTHO05D008544 2.3e-52 209.5 197 55.8
FAN20G2591 Fragaria x ananassa HOM05D006871 ORTHO05D008544 2.9e-52 209.1 197 54.8
FAN27G2794 Fragaria x ananassa HOM05D006871 ORTHO05D008544 5.0e-52 208.4 198 55.1
VMungo0720G2524 Vigna mungo HOM05D006871 ORTHO05D008544 9.5e-51 204.1 193 54.9
Lj1g0003126 Lotus japonicus HOM05D006871 ORTHO05D008544 2.1e-50 203.0 195 55.4
Nn3g21461 Nelumbo nucifera HOM05D006871 ORTHO05D008544 2.1e-50 203.0 158 65.2
Medtr1g088670 Medicago truncatula HOM05D006871 ORTHO05D008544 4.7e-50 201.8 192 56.8
Phvul.007G143800 Phaseolus vulgaris HOM05D006871 ORTHO05D008544 4.7e-50 201.8 193 53.9
Glyma.02G155400 Glycine max HOM05D006871 ORTHO05D008544 1.0e-49 200.7 191 56.0
Os05g0367100 Oryza sativa ssp. japonica HOM05D006871 ORTHO05D008544 4.0e-49 198.7 190 55.3
HPP92_013720 Vanilla planifolia HOM05D006871 ORTHO05D008544 5.2e-49 198.4 188 54.3
Ca_10345_v3 Cicer arietinum L. HOM05D006871 ORTHO05D008544 6.8e-49 198.0 194 55.2
Glyma.10G018900 Glycine max HOM05D006871 ORTHO05D008544 1.5e-48 196.8 191 53.9
Psat6g165000 Pisum sativum HOM05D006871 ORTHO05D008544 2.6e-48 196.1 192 55.2
FAN24G1547 Fragaria x ananassa HOM05D006871 ORTHO05D008544 1.4e-46 190.3 190 54.2
Zm00001eb285510 Zea mays HOM05D006871 ORTHO05D008544 2.4e-46 189.5 184 54.9
AagrBONN_evm.TU.Sc2ySwM_117.3922 Anthoceros agrestis HOM05D006871 ORTHO05D008544 5.2e-33 145.2 190 43.2
Pp3c25_320 Physcomitrium patens HOM05D006871 ORTHO05D008544 2.0e-32 143.3 187 45.5
MBI19_g13201_MAGBIO Magnolia biondii HOM05D006871 ORTHO05D008544 5.8e-32 141.7 117 60.7
DCAR_002824 Daucus carota HOM05D006871 ORTHO05D008544 4.9e-31 138.7 115 60.9
CDE11G0846 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 2.2e-23 113.2 115 53.9
Mapoly0043s0113 Marchantia polymorpha HOM05D006871 ORTHO05D008544 4.9e-23 112.1 185 37.3
Psat1g156280 Pisum sativum HOM05D006871 ORTHO05D008544 1.8e-17 93.6 121 45.5
CBR_g19096 Chara braunii HOM05D006871 ORTHO05D008544 2.1e-13 80.1 77 51.9
MCO15G582 Micromonas commoda HOM05D006871 ORTHO05D008544 5.1e-12 75.5 199 30.7
MD05G1198200 Malus domestica HOM05D006871 ORTHO05D008544 1.1e-11 74.3 55 56.4
Cre17.g726650 Chlamydomonas reinhardtii HOM05D006871 ORTHO05D008544 8.1e-10 68.2 191 30.9
Nitab4.5_0000119g0320 Nicotiana tabacum HOM05D006871 ORTHO05D008544 1.4e-09 67.4 46 65.2
RcHm_v2.0_Chr2g0134071 Rosa chinensis HOM05D006871 ORTHO05D008544 1.3e-07 60.8 63 52.4
MD03G1286500 Malus domestica HOM05D006871 ORTHO05D008544 3.2e-06 56.2 36 61.1


User provided reference genes

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