Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 2.4e-103 379.0 221 100.0
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.4e-95 353.2 226 92.0
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.4e-90 335.9 222 76.6
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 5.7e-84 314.7 242 79.3
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 6.9e-82 307.8 241 77.2
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 1.5e-81 306.6 159 91.2
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 6.1e-78 294.7 236 69.1
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 6.1e-78 294.7 236 69.1
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 8.8e-77 290.8 236 68.2
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 8.8e-77 290.8 236 68.2
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 3.3e-76 288.9 235 71.9
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.1e-74 283.9 235 72.8
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 1.1e-74 283.9 235 72.8
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 5.9e-73 278.1 225 72.0
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 2.2e-72 276.2 221 64.7
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 4.5e-65 251.9 213 66.7
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 4.7e-62 241.9 218 54.6
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 5.0e-56 221.9 154 61.7
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.1e-55 220.7 154 61.7
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 1.5e-55 220.3 151 62.9
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 2.5e-55 219.5 154 61.0
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 4.2e-55 218.8 157 59.9
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 4.2e-55 218.8 154 59.1
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 5.5e-55 218.4 151 61.6
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 1.2e-54 217.2 157 61.8
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 1.6e-54 216.9 150 62.0
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 3.6e-54 215.7 151 61.6
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 6.1e-54 214.9 151 60.9
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 8.0e-54 214.5 154 59.1
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 8.0e-54 214.5 154 57.8
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 8.0e-54 214.5 151 60.9
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.0e-53 214.2 149 63.1
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 1.0e-53 214.2 151 60.3
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 1.4e-53 213.8 151 59.6
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 1.8e-53 213.4 145 64.8
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 1.8e-53 213.4 145 64.8
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 1.8e-53 213.4 149 62.4
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 2.3e-53 213.0 156 60.3
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 2.3e-53 213.0 156 60.3
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 4.0e-53 212.2 149 62.4
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 4.0e-53 212.2 151 60.3
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.2e-52 210.7 149 61.7
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.2e-52 210.7 151 61.6
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 1.5e-52 210.3 151 59.6
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 1.5e-52 210.3 151 61.6
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 1.5e-52 210.3 156 57.1
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 2.0e-52 209.9 155 60.0
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.0e-52 209.9 151 58.9
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 2.6e-52 209.5 158 60.1
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 3.4e-52 209.1 157 58.6
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 4.4e-52 208.8 151 59.6
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 4.4e-52 208.8 145 62.8
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 5.7e-52 208.4 149 59.1
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 7.5e-52 208.0 151 59.6
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 7.5e-52 208.0 159 59.1
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 7.5e-52 208.0 154 57.8
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 9.8e-52 207.6 147 61.2
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 2.2e-51 206.5 151 59.6
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 2.2e-51 206.5 151 58.9
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 2.8e-51 206.1 156 58.3
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.8e-51 206.1 145 58.6
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 3.7e-51 205.7 152 59.2
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 4.8e-51 205.3 156 54.5
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 4.8e-51 205.3 146 60.3
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 4.8e-51 205.3 155 57.4
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 1.1e-50 204.1 153 56.2
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 1.4e-50 203.8 151 57.6
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 1.8e-50 203.4 154 58.4
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.8e-50 203.4 152 61.8
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 3.1e-50 202.6 150 60.0
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 4.1e-50 202.2 155 58.7
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 5.4e-50 201.8 146 60.3
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 5.4e-50 201.8 146 60.3
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 7.0e-50 201.4 151 58.3
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 1.2e-49 200.7 151 57.0
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 4.5e-49 198.7 146 59.6
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 5.9e-49 198.4 148 57.4
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 1.3e-48 197.2 150 58.7
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 1.7e-48 196.8 155 58.7
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.7e-48 196.8 151 57.0
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 1.7e-48 196.8 152 55.3
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 5.0e-48 195.3 156 54.5
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 5.0e-48 195.3 152 55.9
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 8.5e-48 194.5 155 55.5
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 1.1e-47 194.1 161 55.3
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 1.1e-47 194.1 150 53.3
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 1.5e-47 193.7 152 54.6
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.9e-47 193.4 162 54.3
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 2.1e-46 189.9 132 61.4
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 4.7e-46 188.7 155 54.8
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 8.0e-46 188.0 155 54.2
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 1.0e-45 187.6 127 63.0
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.0e-45 187.6 156 53.2
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 1.0e-45 187.6 155 53.5
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.8e-45 186.8 169 50.9
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 2.3e-45 186.4 128 64.8
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.3e-45 186.4 155 54.2
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.3e-45 186.4 155 54.2
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 3.0e-45 186.0 138 58.0
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 4.0e-45 185.7 145 54.5
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.2e-44 184.1 146 56.8
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 3.4e-44 182.6 155 52.9
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 4.4e-44 182.2 136 56.6
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 5.7e-44 181.8 160 52.5
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 5.7e-44 181.8 151 53.0
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 7.5e-44 181.4 141 54.6
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 7.5e-44 181.4 127 61.4
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 3.7e-43 179.1 138 58.0
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 6.3e-43 178.3 155 52.3
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 2.4e-42 176.4 173 47.4
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 5.4e-42 175.3 133 56.4
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 1.6e-41 173.7 117 65.0
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 2.0e-41 173.3 157 51.6
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.0e-41 173.3 200 42.5
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 2.7e-41 172.9 156 48.1
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 4.5e-41 172.2 131 57.3
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 1.0e-40 171.0 163 49.7
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.0e-40 171.0 204 42.6
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 2.9e-40 169.5 113 61.1
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 5.0e-40 168.7 123 58.5
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 6.6e-40 168.3 117 59.0
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.9e-39 166.8 201 42.8
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 5.6e-39 165.2 117 59.8
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 9.5e-39 164.5 176 47.2
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 1.6e-38 163.7 120 59.2
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 1.6e-38 163.7 184 44.6
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 3.6e-38 162.5 181 44.2
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 3.0e-37 159.5 143 45.5
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 8.9e-37 157.9 142 46.5
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 8.9e-37 157.9 142 47.9
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 5.9e-33 145.2 133 46.6
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.7e-32 143.7 98 61.2
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 4.3e-31 139.0 106 52.8
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 2.8e-30 136.3 158 44.9
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 6.2e-30 135.2 143 37.1
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 1.0e-29 134.4 151 44.4
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 4.0e-29 132.5 96 58.3
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 8.9e-29 131.3 97 57.7
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 2.6e-28 129.8 169 41.4
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.4e-26 124.0 99 53.5
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.4e-26 123.2 96 56.2
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 2.4e-26 123.2 140 37.9
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 4.1e-26 122.5 96 55.2
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 1.2e-25 120.9 119 40.3
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 1.2e-25 120.9 149 38.3
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.2e-22 110.9 155 40.6
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 3.6e-22 109.4 138 36.2
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 1.2e-20 104.4 78 57.7
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 1.5e-20 104.0 87 52.9
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 1.7e-19 100.5 159 36.5
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 3.7e-19 99.4 74 58.1
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 2.1e-17 93.6 82 53.7
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 2.7e-17 93.2 72 55.6
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 2.7e-17 93.2 64 57.8
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 3.5e-17 92.8 144 37.5
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 2.3e-16 90.1 73 53.4
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 1.2e-14 84.3 68 54.4
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 8.1e-14 81.6 55 63.6
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 1.8e-13 80.5 65 52.3
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 6.8e-13 78.6 65 50.8
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 4.9e-11 72.4 57 54.4
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 3.0e-08 63.2 42 64.3
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 4.3e-07 59.3 50 52.0
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 2.8e-06 56.6 53 45.3
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 2.8e-06 56.6 52 46.2
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 2.8e-06 56.6 52 46.2
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 4.7e-06 55.8 85 35.3


User provided reference genes

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