Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G02410 Arabidopsis thaliana HOM05D004144 ORTHO05D004902 4.7e-163 577.8 288 100.0
AL1G11770 Arabidopsis lyrata HOM05D004144 ORTHO05D004902 1.2e-155 553.1 288 96.2
CARHR001740 Cardamine hirsuta HOM05D004144 ORTHO05D004902 1.6e-150 536.2 292 93.5
Carub.0001s0149 Capsella rubella HOM05D004144 ORTHO05D004902 2.0e-150 535.8 288 93.1
Thhalv10008363m.g Eutrema salsugineum HOM05D004144 ORTHO05D004902 2.7e-142 508.8 292 89.7
Sp1g01500 Schrenkiella parvula HOM05D004144 ORTHO05D004902 4.6e-142 508.1 292 89.0
BcaC07g42390 Brassica carinata HOM05D004144 ORTHO05D004902 8.6e-133 477.2 291 86.6
C08p53300 Brassica napus HOM05D004144 ORTHO05D004902 3.3e-132 475.3 290 86.6
Aa31LG1G10050 Aethionema arabicum HOM05D004144 ORTHO05D004902 4.7e-131 471.5 291 84.5
A09p68730 Brassica napus HOM05D004144 ORTHO05D004902 1.8e-130 469.5 291 85.2
BolC8t52845H Brassica oleracea HOM05D004144 ORTHO05D004902 1.8e-130 469.5 291 85.2
BcaC07g42317 Brassica carinata HOM05D004144 ORTHO05D004902 1.2e-129 466.8 293 84.6
A08p37680 Brassica napus HOM05D004144 ORTHO05D004902 2.9e-128 462.2 292 85.3
BraA08t35664Z Brassica rapa HOM05D004144 ORTHO05D004902 2.9e-128 462.2 292 85.3
BraA09t42212Z Brassica rapa HOM05D004144 ORTHO05D004902 2.9e-128 462.2 299 82.3
C03p00140 Brassica napus HOM05D004144 ORTHO05D004902 3.7e-128 461.8 290 84.1
A10p01190 Brassica napus HOM05D004144 ORTHO05D004902 1.2e-126 456.8 292 82.2
BcaC05g24628 Brassica carinata HOM05D004144 ORTHO05D004902 6.0e-126 454.5 289 82.7
BcaB01g06136 Brassica carinata HOM05D004144 ORTHO05D004902 3.0e-125 452.2 289 83.0
BolC3t12580H Brassica oleracea HOM05D004144 ORTHO05D004902 3.0e-125 452.2 289 83.0
BraA10t42397Z Brassica rapa HOM05D004144 ORTHO05D004902 1.5e-121 439.9 297 79.1
BolC5t28904H Brassica oleracea HOM05D004144 ORTHO05D004902 7.6e-121 437.6 294 79.6
C05p01210 Brassica napus HOM05D004144 ORTHO05D004902 1.6e-115 419.9 284 79.6
BcaB03g13513 Brassica carinata HOM05D004144 ORTHO05D004902 7.6e-113 411.0 291 76.3
THA.LOC104815917 Tarenaya hassleriana HOM05D004144 ORTHO05D004902 4.9e-112 408.3 302 72.2
BcaB01g06133 Brassica carinata HOM05D004144 ORTHO05D004902 4.2e-111 405.2 292 77.1
C04p03290 Brassica napus HOM05D004144 ORTHO05D004902 2.3e-109 399.4 258 82.2
BcaNung06859 Brassica carinata HOM05D004144 ORTHO05D004902 1.3e-99 367.1 217 86.6
Atru.chr1.1960 Acer truncatum HOM05D004144 ORTHO05D004902 4.6e-94 348.6 275 68.0
Lsat_1_v5_gn_3_67200 Lactuca sativa HOM05D004144 ORTHO05D004902 1.0e-93 347.4 278 67.6
Ciclev10002120m.g Citrus clementina HOM05D004144 ORTHO05D004902 1.3e-93 347.1 216 81.0
SGA_v2.0_scaffold108G30989 Striga asiatica HOM05D004144 ORTHO05D004902 1.3e-93 347.1 193 87.0
SalBow3G3518 Salvia bowleyana HOM05D004144 ORTHO05D004902 5.1e-93 345.1 275 67.6
MD07G1041100 Malus domestica HOM05D004144 ORTHO05D004902 6.7e-93 344.7 277 65.3
arahy.Tifrunner.gnm1.ann1.U9M4C7 Arachis hypogaea HOM05D004144 ORTHO05D004902 1.5e-92 343.6 284 65.1
arahy.Tifrunner.gnm1.ann1.87SQNY Arachis hypogaea HOM05D004144 ORTHO05D004902 3.3e-92 342.4 284 65.1
Cc07_g12990 Coffea canephora HOM05D004144 ORTHO05D004902 3.3e-92 342.4 207 82.6
CSS0050506 Camellia sinensis var. sinensis HOM05D004144 ORTHO05D004902 4.3e-92 342.0 192 87.0
Lalb_Chr18g0053671 Lupinus albus HOM05D004144 ORTHO05D004902 5.6e-92 341.7 286 65.4
Lalb_Chr20g0117051 Lupinus albus HOM05D004144 ORTHO05D004902 7.4e-92 341.3 286 64.7
Hma1.2p1_0034F.1_g021300 Hydrangea macrophylla HOM05D004144 ORTHO05D004902 1.3e-91 340.5 239 73.2
Prupe.3G281100 Prunus persica HOM05D004144 ORTHO05D004902 1.3e-91 340.5 271 65.7
CiPaw.04G048600 Carya illinoinensis HOM05D004144 ORTHO05D004902 1.6e-91 340.1 286 65.4
RcHm_v2.0_Chr3g0452351 Rosa chinensis HOM05D004144 ORTHO05D004902 3.7e-91 339.0 205 81.0
MD02G1272100 Malus domestica HOM05D004144 ORTHO05D004902 4.8e-91 338.6 277 64.3
Eucgr.J01628 Eucalyptus grandis HOM05D004144 ORTHO05D004902 6.2e-91 338.2 219 77.2
Glyma.18G043100 Glycine max HOM05D004144 ORTHO05D004902 6.2e-91 338.2 200 83.0
Sc18g0000970 Simmondsia chinensis HOM05D004144 ORTHO05D004902 6.2e-91 338.2 192 85.4
vmacro18517 Vaccinium macrocarpon HOM05D004144 ORTHO05D004902 6.2e-91 338.2 192 84.4
EL10Ac1g00114 Beta vulgaris HOM05D004144 ORTHO05D004902 8.1e-91 337.8 198 83.8
Phvul.001G227800 Phaseolus vulgaris HOM05D004144 ORTHO05D004902 1.1e-90 337.4 269 65.8
PGR042G3225 Punica granatum HOM05D004144 ORTHO05D004902 1.1e-90 337.4 195 85.1
VMungo1383G1060 Vigna mungo HOM05D004144 ORTHO05D004902 1.4e-90 337.0 192 85.4
ECA238G1245 Erigeron canadensis HOM05D004144 ORTHO05D004902 1.8e-90 336.7 197 82.2
RcHm_v2.0_Chr1g0359421 Rosa chinensis HOM05D004144 ORTHO05D004902 2.4e-90 336.3 205 80.5
Lj4A255T25 Lonicera japonica HOM05D004144 ORTHO05D004902 3.1e-90 335.9 224 76.3
TPR.G26653 Trifolium pratense HOM05D004144 ORTHO05D004902 3.1e-90 335.9 189 86.2
Hund18774 Selenicereus undatus HOM05D004144 ORTHO05D004902 4.0e-90 335.5 221 77.4
MSTRG.15643 Avicennia marina HOM05D004144 ORTHO05D004902 9.0e-90 334.3 284 64.4
TAR629G3342 Trochodendron aralioides HOM05D004144 ORTHO05D004902 2.0e-89 333.2 284 64.8
unitig_32.g10726 Utricularia gibba HOM05D004144 ORTHO05D004902 2.0e-89 333.2 195 83.6
Migut.H02241 Erythranthe guttata HOM05D004144 ORTHO05D004902 2.6e-89 332.8 183 88.5
Glyma.11G213600 Glycine max HOM05D004144 ORTHO05D004902 2.6e-89 332.8 284 65.1
Lj6g0015186 Lotus japonicus HOM05D004144 ORTHO05D004902 3.4e-89 332.4 285 63.5
Prupe.7G012700 Prunus persica HOM05D004144 ORTHO05D004902 3.4e-89 332.4 281 64.8
HanXRQChr16g0532751 Helianthus annuus HOM05D004144 ORTHO05D004902 4.5e-89 332.0 273 64.5
Sed0013521 Sechium edule HOM05D004144 ORTHO05D004902 4.5e-89 332.0 199 82.9
Psat5g142040 Pisum sativum HOM05D004144 ORTHO05D004902 1.0e-88 330.9 285 62.8
Atru.chr4.1444 Acer truncatum HOM05D004144 ORTHO05D004902 1.7e-88 330.1 247 70.4
MELO3C017589.2 Cucumis melo HOM05D004144 ORTHO05D004902 1.7e-88 330.1 199 82.4
Gorai.001G122400 Gossypium raimondii HOM05D004144 ORTHO05D004902 1.7e-88 330.1 280 63.9
Sed0015810 Sechium edule HOM05D004144 ORTHO05D004902 1.7e-88 330.1 199 82.4
CAN.G616.15 Capsicum annuum HOM05D004144 ORTHO05D004902 2.2e-88 329.7 211 78.2
PGR102G3261 Punica granatum HOM05D004144 ORTHO05D004902 2.2e-88 329.7 225 76.4
Gohir.A11G203400 Gossypium hirsutum HOM05D004144 ORTHO05D004902 2.9e-88 329.3 280 63.9
Sopen05g007260 Solanum pennellii HOM05D004144 ORTHO05D004902 2.9e-88 329.3 204 78.4
Manes.16G049900 Manihot esculenta HOM05D004144 ORTHO05D004902 3.8e-88 328.9 189 84.1
Gohir.D07G114100 Gossypium hirsutum HOM05D004144 ORTHO05D004902 4.9e-88 328.6 280 63.9
Medtr3g053650 Medicago truncatula HOM05D004144 ORTHO05D004902 4.9e-88 328.6 289 61.6
Peaxi162Scf00525g00621 Petunia axillaris HOM05D004144 ORTHO05D004902 4.9e-88 328.6 216 75.9
Duzib170G0191 Durio zibethinus HOM05D004144 ORTHO05D004902 1.1e-87 327.4 281 63.0
Nitab4.5_0013309g0010 Nicotiana tabacum HOM05D004144 ORTHO05D004902 1.1e-87 327.4 197 80.2
ClCG07G009570 Citrullus lanatus HOM05D004144 ORTHO05D004902 2.5e-87 326.2 255 69.4
Ca_17077_v3 Cicer arietinum L. HOM05D004144 ORTHO05D004902 3.2e-87 325.9 202 78.7
PSO170G2172 Papaver somniferum HOM05D004144 ORTHO05D004902 7.1e-87 324.7 266 65.8
Gohir.A07G110500 Gossypium hirsutum HOM05D004144 ORTHO05D004902 1.6e-86 323.6 280 62.9
Nn1g04486 Nelumbo nucifera HOM05D004144 ORTHO05D004902 2.1e-86 323.2 204 78.4
CDE04G3693 Ceratophyllum demersum HOM05D004144 ORTHO05D004902 2.7e-86 322.8 262 64.5
vmacro19339 Vaccinium macrocarpon HOM05D004144 ORTHO05D004902 7.9e-86 321.2 318 56.9
Oeu062160.1 Olea europaea HOM05D004144 ORTHO05D004902 1.8e-85 320.1 244 69.7
MBI16_g12479_MAGBIO Magnolia biondii HOM05D004144 ORTHO05D004902 3.0e-85 319.3 192 80.7
Thecc.09G283000 Theobroma cacao HOM05D004144 ORTHO05D004902 3.9e-85 318.9 286 63.6
TWI23G0771 Tripterygium wilfordii HOM05D004144 ORTHO05D004902 6.7e-85 318.2 255 65.9
arahy.Tifrunner.gnm1.ann1.F8HJNJ Arachis hypogaea HOM05D004144 ORTHO05D004902 2.5e-84 316.2 338 54.4
Cfa007770 Carpinus fangiana HOM05D004144 ORTHO05D004902 3.3e-84 315.8 286 62.9
COL.COLO4_19858 Corchorus olitorius HOM05D004144 ORTHO05D004902 3.3e-84 315.8 316 57.9
ATR0626G272 Amborella trichopoda HOM05D004144 ORTHO05D004902 4.3e-84 315.5 181 83.4
Haze_14304 Corylus avellana HOM05D004144 ORTHO05D004902 2.1e-83 313.2 309 58.9
SGA_v2.0_scaffold2G00964 Striga asiatica HOM05D004144 ORTHO05D004902 2.8e-83 312.8 275 63.6
HPP92_002286 Vanilla planifolia HOM05D004144 ORTHO05D004902 1.4e-82 310.5 180 83.3
Potri.001G078500 Populus trichocarpa HOM05D004144 ORTHO05D004902 2.4e-82 309.7 166 89.8
Zm00001eb055360 Zea mays HOM05D004144 ORTHO05D004902 2.4e-82 309.7 195 76.9
FAN06G4796 Fragaria x ananassa HOM05D004144 ORTHO05D004902 3.1e-82 309.3 206 74.8
CsaV3_UNG144100 Cucumis sativus L. HOM05D004144 ORTHO05D004902 4.1e-82 308.9 239 68.2
SEGI_01185 Sequoiadendron giganteum HOM05D004144 ORTHO05D004902 9.0e-82 307.8 203 73.9
FAN10G1720 Fragaria x ananassa HOM05D004144 ORTHO05D004902 1.2e-81 307.4 197 76.6
GSVIVG01024421001 Vitis vinifera HOM05D004144 ORTHO05D004902 1.2e-81 307.4 288 58.3
FAN10G4152 Fragaria x ananassa HOM05D004144 ORTHO05D004902 4.5e-81 305.4 264 63.6
Os03g0718600 Oryza sativa ssp. japonica HOM05D004144 ORTHO05D004902 4.5e-81 305.4 179 79.9
FAN01G2657 Fragaria x ananassa HOM05D004144 ORTHO05D004902 5.9e-81 305.1 264 63.6
Aqoxy3G04002 Aquilegia oxysepala HOM05D004144 ORTHO05D004902 1.3e-80 303.9 210 71.9
CiPaw.03G077800 Carya illinoinensis HOM05D004144 ORTHO05D004902 1.3e-80 303.9 268 63.8
Duzib168G0342 Durio zibethinus HOM05D004144 ORTHO05D004902 1.7e-80 303.5 171 86.0
CsaV3_4G004740 Cucumis sativus L. HOM05D004144 ORTHO05D004902 2.2e-80 303.1 195 77.4
Oeu048969.2 Olea europaea HOM05D004144 ORTHO05D004902 1.2e-78 297.4 318 53.5
SMO169G0145 Selaginella moellendorffii HOM05D004144 ORTHO05D004902 1.9e-76 290.0 180 76.7
PSO782G2695 Papaver somniferum HOM05D004144 ORTHO05D004902 3.7e-75 285.8 187 76.5
Mapoly0070s0059 Marchantia polymorpha HOM05D004144 ORTHO05D004902 8.2e-75 284.6 227 64.8
Lj2A513G59 Lonicera japonica HOM05D004144 ORTHO05D004902 1.8e-74 283.5 254 62.2
Solyc05g012440.4 Solanum lycopersicum HOM05D004144 ORTHO05D004902 3.1e-74 282.7 156 85.9
Actinidia28789 Actinidia chinensis HOM05D004144 ORTHO05D004902 1.5e-73 280.4 161 84.5
Dinv19068 Davidia involucrata HOM05D004144 ORTHO05D000107 3.4e-73 279.3 146 90.4
FAN03G0820 Fragaria x ananassa HOM05D004144 ORTHO05D004902 3.8e-72 275.8 149 88.6
Medtr3g064810 Medicago truncatula HOM05D004144 ORTHO05D004902 7.2e-71 271.6 187 74.3
AagrBONN_evm.TU.Sc2ySwM_228.342 Anthoceros agrestis HOM05D004144 ORTHO05D004902 1.1e-68 264.2 170 75.3
CBR_g51986 Chara braunii HOM05D004144 ORTHO05D004902 1.1e-66 257.7 185 66.5
Sabra01G0055800 Salix brachista HOM05D004144 ORTHO05D004902 3.1e-66 256.1 450 38.9
AUR62023515 Chenopodium quinoa HOM05D004144 ORTHO05D004902 5.0e-64 248.8 177 70.6
Rhsim08G0020500 Rhododendron simsii HOM05D004144 ORTHO05D004902 7.2e-63 245.0 192 68.8
MCO11G668 Micromonas commoda HOM05D004144 ORTHO05D004902 1.4e-58 230.7 183 59.0
AUR62037409 Chenopodium quinoa HOM05D004144 ORTHO05D004902 3.5e-57 226.1 163 74.8
Cre01.g055550 Chlamydomonas reinhardtii HOM05D004144 ORTHO05D004902 1.7e-56 223.8 202 58.4
Rhsim05G0054900 Rhododendron simsii HOM05D004144 ORTHO05D004902 3.2e-55 219.5 251 54.6
CANSAT35G0424 Cannabis sativa HOM05D004144 ORTHO05D004902 3.6e-54 216.1 132 81.1
QL02p060046 Quercus lobata HOM05D004144 ORTHO05D004902 6.1e-54 215.3 228 57.0
Nitab4.5_0000905g0140 Nicotiana tabacum HOM05D004144 ORTHO05D004902 2.6e-52 209.9 138 76.1
BcaC02g12462 Brassica carinata HOM05D004144 ORTHO05D004902 7.0e-50 201.8 148 76.4
SHI20752 Sapria himalayana HOM05D004144 ORTHO05D004902 7.0e-50 201.8 173 65.9
PRCOL_00006103 Prasinoderma coloniale HOM05D004144 ORTHO05D004902 3.8e-48 196.1 190 54.2
Haze_26263 Corylus avellana HOM05D004144 ORTHO05D004902 5.2e-45 185.7 257 41.2
BcaB03g15782 Brassica carinata HOM05D004144 ORTHO05D004902 6.8e-45 185.3 148 68.2
BcaNung07044 Brassica carinata HOM05D004144 ORTHO05D004902 6.8e-45 185.3 100 93.0
BcaB03g13511 Brassica carinata HOM05D004144 ORTHO05D004902 1.8e-42 177.2 199 57.3
Haze_26986 Corylus avellana HOM05D004144 ORTHO05D004902 3.2e-39 166.4 187 44.4
Hma1.2p1_0158F.1_g069830 Hydrangea macrophylla HOM05D004144 ORTHO05D004902 7.2e-39 165.2 132 65.9
BcaB08g36056 Brassica carinata HOM05D004144 ORTHO05D004902 3.6e-38 162.9 119 76.5
Cfa022599 Carpinus fangiana HOM05D004144 ORTHO05D004902 4.1e-34 149.4 160 51.2
CsaV3_UNG141080 Cucumis sativus L. HOM05D004144 ORTHO05D004902 2.9e-32 143.3 104 71.2
CsaV3_UNG216460 Cucumis sativus L. HOM05D004144 ORTHO05D004902 2.9e-32 143.3 104 71.2
BolC9t57687H Brassica oleracea HOM05D004144 ORTHO05D004902 5.0e-32 142.5 111 76.6
DCAR_025183 Daucus carota HOM05D002069 ORTHO05D004902 7.3e-31 138.7 77 87.0
BcaNung06862 Brassica carinata HOM05D004144 ORTHO05D004902 1.0e-29 134.8 108 69.4
Pp3c16_1230 Physcomitrium patens HOM05D004144 ORTHO05D004902 4.0e-29 132.9 106 65.1
Gohir.A10G080150 Gossypium hirsutum HOM05D004144 ORTHO05D004902 8.9e-29 131.7 96 71.9
BcaC04g20051 Brassica carinata HOM05D004144 ORTHO05D004902 1.6e-25 120.9 114 65.8
C09p48370 Brassica napus HOM05D004144 ORTHO05D004902 1.7e-24 117.5 85 75.3
BcaNung06861 Brassica carinata HOM05D004144 ORTHO05D004902 2.3e-24 117.1 66 89.4
Dinv36681 Davidia involucrata HOM05D004144 ORTHO05D004902 2.5e-23 113.6 107 56.1
AUR62038774 Chenopodium quinoa HOM05D004144 ORTHO05D004902 7.3e-23 112.1 96 65.6
TAR002G0001 Trochodendron aralioides HOM05D004144 ORTHO05D004902 1.5e-20 104.4 165 44.2
Gohir.A08G125401 Gossypium hirsutum HOM05D004144 ORTHO05D004902 2.6e-20 103.6 106 56.6
BcaC05g24626 Brassica carinata HOM05D004144 ORTHO05D004902 2.2e-19 100.5 53 94.3
arahy.Tifrunner.gnm1.ann1.GZZ31L Arachis hypogaea HOM05D001327 ORTHO05D004902 9.2e-18 95.1 83 60.2
Oeu009435.1 Olea europaea HOM05D004144 ORTHO05D004902 1.0e-16 91.7 46 93.5
HanXRQChr03g0088171 Helianthus annuus HOM05D004144 ORTHO05D004902 8.6e-16 88.6 47 89.4
HanXRQChr13g0395861 Helianthus annuus HOM05D004144 ORTHO05D004902 8.6e-16 88.6 47 89.4
arahy.Tifrunner.gnm1.ann1.9TQH81 Arachis hypogaea HOM05D001327 ORTHO05D001271 5.6e-15 85.9 62 71.0
arahy.Tifrunner.gnm1.ann1.X1YH8V Arachis hypogaea HOM05D004144 ORTHO05D038922 6.4e-11 72.4 69 60.9
CDE06G2511 Ceratophyllum demersum HOM05D004144 ORTHO05D004902 8.3e-11 72.0 55 65.5
Oeu009434.1 Olea europaea HOM05D004144 ORTHO05D004902 1.1e-10 71.6 36 94.4


User provided reference genes

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