Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G02145 Arabidopsis thaliana HOM05D006213 ORTHO05D008107 1.0e-265 919.5 454 100.0
AL1G10080 Arabidopsis lyrata HOM05D006213 ORTHO05D008107 2.2e-255 885.2 454 96.3
Carub.0001s0002 Capsella rubella HOM05D006213 ORTHO05D008107 3.3e-248 861.3 454 92.3
CARHR000180 Cardamine hirsuta HOM05D006213 ORTHO05D008107 4.1e-246 854.4 454 91.9
BraA10t42287Z Brassica rapa HOM05D006213 ORTHO05D008107 2.0e-240 835.5 454 90.1
C05p00060 Brassica napus HOM05D006213 ORTHO05D008107 1.3e-239 832.8 454 90.1
BolC5t28793H Brassica oleracea HOM05D006213 ORTHO05D008107 1.3e-239 832.8 454 90.1
A10p00090 Brassica napus HOM05D006213 ORTHO05D008107 1.7e-239 832.4 454 89.9
Sp1g00110 Schrenkiella parvula HOM05D006213 ORTHO05D008107 1.1e-235 819.7 454 89.0
BraA09t42282Z Brassica rapa HOM05D006213 ORTHO05D008107 1.6e-226 789.3 456 85.3
BcaC07g42440 Brassica carinata HOM05D006213 ORTHO05D008107 2.4e-222 775.4 454 84.1
Aa31LG1G11550 Aethionema arabicum HOM05D006213 ORTHO05D008107 4.1e-222 774.6 486 79.8
A09p69370 Brassica napus HOM05D006213 ORTHO05D008107 7.0e-206 720.7 463 78.0
BcaB03g13635 Brassica carinata HOM05D006213 ORTHO05D008107 4.6e-205 718.0 454 80.4
THA.LOC104814061 Tarenaya hassleriana HOM05D006213 ORTHO05D008107 4.3e-203 711.4 455 76.5
Gohir.D08G160600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 2.6e-200 702.2 453 72.6
Gorai.004G166900 Gossypium raimondii HOM05D006213 ORTHO05D008107 2.2e-199 699.1 453 72.2
Gohir.A08G139600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 1.9e-198 696.0 453 71.5
Duzib133G0253 Durio zibethinus HOM05D006213 ORTHO05D008107 1.9e-195 686.0 453 71.5
QL04p029079 Quercus lobata HOM05D006213 ORTHO05D008107 2.1e-194 682.6 453 70.4
Ciclev10019843m.g Citrus clementina HOM05D006213 ORTHO05D008107 6.2e-194 681.0 454 71.4
Dinv44047 Davidia involucrata HOM05D006213 ORTHO05D008107 1.1e-193 680.2 453 69.1
Thecc.01G397800 Theobroma cacao HOM05D006213 ORTHO05D008107 1.1e-193 680.2 453 70.6
CiPaw.13G025000 Carya illinoinensis HOM05D006213 ORTHO05D008107 4.9e-191 671.4 453 70.2
Thhalv10007459m.g Eutrema salsugineum HOM05D006213 ORTHO05D008107 8.4e-191 670.6 375 89.6
Oeu037443.2 Olea europaea HOM05D006213 ORTHO05D008107 7.1e-190 667.5 454 70.7
COL.COLO4_12385 Corchorus olitorius HOM05D006213 ORTHO05D008107 1.6e-189 666.4 429 72.5
BolC8t52928H Brassica oleracea HOM05D006213 ORTHO05D008107 3.5e-189 665.2 471 73.0
GSVIVG01018298001 Vitis vinifera HOM05D006213 ORTHO05D008107 7.8e-189 664.1 453 69.1
PGR042G3832 Punica granatum HOM05D006213 ORTHO05D008107 1.1e-187 660.2 453 68.9
Manes.05G056250 Manihot esculenta HOM05D006213 ORTHO05D008107 3.3e-187 658.7 453 68.9
Actinidia30939 Actinidia chinensis HOM05D006213 ORTHO05D008107 9.6e-187 657.1 443 71.1
Potri.002G139200 Populus trichocarpa HOM05D006213 ORTHO05D008107 2.8e-186 655.6 453 69.1
Sed0013772 Sechium edule HOM05D006213 ORTHO05D008107 2.8e-186 655.6 454 68.7
ClCG06G000670 Citrullus lanatus HOM05D006213 ORTHO05D008107 3.6e-186 655.2 454 67.8
MELO3C022474.2 Cucumis melo HOM05D006213 ORTHO05D008107 4.7e-186 654.8 454 68.5
CsaV3_6G006460 Cucumis sativus L. HOM05D006213 ORTHO05D008107 2.4e-185 652.5 454 68.3
arahy.Tifrunner.gnm1.ann1.SKJX1Q Arachis hypogaea HOM05D006213 ORTHO05D008107 4.0e-185 651.7 453 67.8
Psat4g223120 Pisum sativum HOM05D006213 ORTHO05D008107 1.2e-184 650.2 453 68.0
RcHm_v2.0_Chr1g0346061 Rosa chinensis HOM05D006213 ORTHO05D008107 1.2e-184 650.2 453 69.3
ECA234G2079 Erigeron canadensis HOM05D006213 ORTHO05D008107 2.6e-184 649.0 450 67.8
Prupe.2G122100 Prunus persica HOM05D006213 ORTHO05D008107 5.8e-184 647.9 453 68.2
MSTRG.20674 Avicennia marina HOM05D006213 ORTHO05D008107 8.4e-183 644.0 454 67.4
HanXRQChr17g0562541 Helianthus annuus HOM05D006213 ORTHO05D008107 8.4e-183 644.0 453 66.9
Eucgr.E01545 Eucalyptus grandis HOM05D006213 ORTHO05D008107 2.4e-182 642.5 453 66.7
Migut.B01508 Erythranthe guttata HOM05D006213 ORTHO05D008107 3.2e-182 642.1 454 68.9
TWI14G1148 Tripterygium wilfordii HOM05D006213 ORTHO05D008107 4.2e-182 641.7 453 68.7
SalBow5G4694 Salvia bowleyana HOM05D006213 ORTHO05D008107 5.4e-182 641.3 454 67.0
Medtr8g007345 Medicago truncatula HOM05D006213 ORTHO05D008107 3.5e-181 638.6 452 66.6
Aqoxy3G02673 Aquilegia oxysepala HOM05D006213 ORTHO05D008107 1.7e-180 636.3 455 66.2
Lalb_Chr12g0210581 Lupinus albus HOM05D006213 ORTHO05D008107 3.0e-180 635.6 453 66.0
CAN.G1585.8 Capsicum annuum HOM05D006213 ORTHO05D008107 3.9e-180 635.2 453 66.2
Sc23g0004890 Simmondsia chinensis HOM05D006213 ORTHO05D008107 1.5e-179 633.3 454 66.7
Glyma.03G108200 Glycine max HOM05D006213 ORTHO05D008107 1.9e-179 632.9 453 66.0
Solyc01g089900.4 Solanum lycopersicum HOM05D006213 ORTHO05D008107 2.1e-178 629.4 453 65.3
MBI04_g13842_MAGBIO Magnolia biondii HOM05D006213 ORTHO05D008107 6.2e-178 627.9 441 66.4
Phvul.010G045600 Phaseolus vulgaris HOM05D006213 ORTHO05D008107 6.2e-178 627.9 453 66.0
Sabra02G0108200 Salix brachista HOM05D006213 ORTHO05D008107 8.1e-178 627.5 504 62.3
PSO017G1536 Papaver somniferum HOM05D006213 ORTHO05D008107 3.4e-176 622.1 453 64.7
Sabra02G0108400 Salix brachista HOM05D006213 ORTHO05D008107 3.4e-176 622.1 504 61.7
Lj3g0010513 Lotus japonicus HOM05D006213 ORTHO05D008107 2.2e-175 619.4 434 68.2
FAN06G2734 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.9e-174 616.3 468 64.7
FAN06G3851 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.9e-174 616.3 468 64.7
FAN06G4345 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.9e-174 616.3 468 64.7
Lsat_1_v5_gn_4_39261 Lactuca sativa HOM05D006213 ORTHO05D008107 3.2e-174 615.5 453 66.4
PSO837G0013 Papaver somniferum HOM05D006213 ORTHO05D008107 5.4e-174 614.8 453 64.7
FAN03G1287 Fragaria x ananassa HOM05D006213 ORTHO05D008107 2.1e-173 612.8 468 65.0
CANSAT25G1963 Cannabis sativa HOM05D006213 ORTHO05D008107 1.3e-172 610.1 452 63.3
FvH4_7g09360 Fragaria vesca HOM05D006213 ORTHO05D008107 3.9e-172 608.6 453 65.8
Nn1g00791 Nelumbo nucifera HOM05D006213 ORTHO05D008107 1.5e-171 606.7 453 61.8
CDE02G2871 Ceratophyllum demersum HOM05D006213 ORTHO05D008107 1.4e-169 600.1 441 62.6
ATR0665G630 Amborella trichopoda HOM05D006213 ORTHO05D008107 1.3e-167 593.6 453 62.9
MD07G1098100 Malus domestica HOM05D006213 ORTHO05D008107 8.7e-164 580.9 396 72.0
AUR62013761 Chenopodium quinoa HOM05D006213 ORTHO05D008107 1.6e-162 576.6 484 60.5
vmacro13511 Vaccinium macrocarpon HOM05D006213 ORTHO05D008107 3.7e-162 575.5 570 53.7
TPR.G32127 Trifolium pratense HOM05D006213 ORTHO05D008107 6.9e-161 571.2 479 58.9
Os04g0544900 Oryza sativa ssp. japonica HOM05D006213 ORTHO05D008107 9.0e-161 570.9 453 60.3
Hund17106 Selenicereus undatus HOM05D006213 ORTHO05D008107 2.0e-160 569.7 454 61.9
Glyma.07G119300 Glycine max HOM05D006213 ORTHO05D008107 1.3e-159 567.0 394 67.0
Peaxi162Scf00853g00316 Petunia axillaris HOM05D006213 ORTHO05D008107 4.9e-159 565.1 433 63.5
Sopen01g035740 Solanum pennellii HOM05D006213 ORTHO05D008107 8.4e-159 564.3 410 64.9
HPP92_020680 Vanilla planifolia HOM05D006213 ORTHO05D008107 3.2e-158 562.4 437 62.0
BcaC07g42336 Brassica carinata HOM05D006213 ORTHO05D008107 7.1e-158 561.2 454 67.4
FAN10G1434 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.5e-155 553.5 425 64.5
Nitab4.5_0004837g0040 Nicotiana tabacum HOM05D006213 ORTHO05D008107 6.3e-154 548.1 493 57.4
Lj2g0022411 Lotus japonicus HOM05D006213 ORTHO05D008107 1.0e-151 540.8 396 63.9
SGA_v2.0_scaffold52G19244 Striga asiatica HOM05D006213 ORTHO05D008107 1.4e-150 537.0 437 62.0
Zm00001eb075160 Zea mays HOM05D006213 ORTHO05D008107 1.6e-149 533.5 453 55.4
AUR62023393 Chenopodium quinoa HOM05D006213 ORTHO05D008107 1.1e-142 510.8 401 61.1
Mapoly0044s0100 Marchantia polymorpha HOM05D006213 ORTHO05D008107 2.3e-132 476.5 455 51.6
EL10Ac1g00745 Beta vulgaris HOM05D006213 ORTHO05D008107 2.2e-130 469.9 454 52.4
Pp3c18_21620 Physcomitrium patens HOM05D006213 ORTHO05D008107 2.2e-130 469.9 454 48.9
AagrBONN_evm.TU.Sc2ySwM_344.5349 Anthoceros agrestis HOM05D006213 ORTHO05D008107 1.8e-129 466.8 453 50.6
SMO117G0345 Selaginella moellendorffii HOM05D006213 ORTHO05D008107 1.3e-127 460.7 444 51.8
PGSC0003DMG402031172 Solanum tuberosum HOM05D006213 ORTHO05D008107 5.7e-123 445.3 292 72.6
TAR374G1216 Trochodendron aralioides HOM05D006213 ORTHO05D008107 1.6e-120 437.2 292 73.6
Haze_02866 Corylus avellana HOM05D006213 ORTHO05D008107 5.9e-120 435.3 491 50.5
Cc02_g25210 Coffea canephora HOM05D006213 ORTHO05D008107 1.0e-119 434.5 293 72.0
unitig_8.g3848 Utricularia gibba HOM05D006213 ORTHO05D008107 1.9e-118 430.3 455 51.6
VMungo0331G0117 Vigna mungo HOM05D006213 ORTHO05D008107 2.5e-118 429.9 649 40.2
Lj9A554T27 Lonicera japonica HOM05D006213 ORTHO05D008107 2.8e-114 416.4 312 64.7
Sabra02G0107000 Salix brachista HOM05D006213 ORTHO05D008107 4.7e-109 399.1 347 58.5
Nitab4.5_0000563g0240 Nicotiana tabacum HOM05D006213 ORTHO05D008107 1.4e-97 360.9 378 49.5
Rhsim07G0037600 Rhododendron simsii HOM05D006213 ORTHO05D008107 1.1e-89 334.7 383 48.6
Atru.chr5.108 Acer truncatum HOM05D006213 ORTHO05D008107 9.2e-89 331.6 250 66.0
SGA_v2.0_scaffold340G49332 Striga asiatica HOM05D006213 ORTHO05D008107 4.9e-82 309.3 449 41.2
MCO12G031 Micromonas commoda HOM05D006213 ORTHO05D008107 8.7e-71 271.9 516 34.7
SHI13624 Sapria himalayana HOM05D006213 ORTHO05D008107 1.1e-62 245.0 262 51.5
PRCOL_00003622 Prasinoderma coloniale HOM05D006213 ORTHO05D008107 5.3e-60 236.1 449 35.0
SEGI_13726 Sequoiadendron giganteum HOM05D006213 ORTHO05D008107 2.6e-59 233.8 183 57.9
FAN01G1024 Fragaria x ananassa HOM05D006213 ORTHO05D008107 5.4e-57 226.1 159 70.4
DCAR_029492 Daucus carota HOM05D006213 ORTHO05D008107 5.6e-54 216.1 161 64.0
arahy.Tifrunner.gnm1.ann1.RXQ5U4 Arachis hypogaea HOM05D006213 ORTHO05D008107 6.4e-50 202.6 161 65.2
FAN06G1264 Fragaria x ananassa HOM05D006213 ORTHO05D008107 3.7e-45 186.8 159 61.6
Cc02_g25230 Coffea canephora HOM05D006213 ORTHO05D008107 1.4e-33 148.3 113 56.6
SHI13625 Sapria himalayana HOM05D006213 ORTHO05D008107 7.4e-30 136.0 155 45.8
Psat4g223040 Pisum sativum HOM05D006213 ORTHO05D008107 6.3e-21 106.3 82 67.1
Ca_14798_v3 Cicer arietinum L. HOM05D006213 ORTHO05D008107 1.4e-20 105.1 76 69.7
Psat5g245640 Pisum sativum HOM05D000300 ORTHO05D000383 1.4e-15 88.6 64 67.2
FAN06G1132 Fragaria x ananassa HOM05D006213 ORTHO05D008107 3.3e-14 84.0 101 45.5
arahy.Tifrunner.gnm1.ann1.PL2W5K Arachis hypogaea HOM05D006213 ORTHO05D008107 5.7e-14 83.2 79 44.3
Atru.chr5.109 Acer truncatum HOM05D006213 ORTHO05D000044 1.0e-10 72.4 80 47.5
Cc02_g25220 Coffea canephora HOM05D006213 ORTHO05D008107 1.5e-09 68.6 49 63.3
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 2.5e-09 67.8 261 23.8
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 7.2e-09 66.2 273 27.8
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 8.0e-08 62.8 283 25.8
DCAR_029493 Daucus carota HOM05D006213 ORTHO05D008107 1.8e-07 61.6 29 82.8
Manes.15G095400 Manihot esculenta HOM05D005919 ORTHO05D007176 6.8e-07 59.7 260 26.5
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 8.8e-07 59.3 285 21.1
CANSAT11G0901 Cannabis sativa HOM05D005919 ORTHO05D007176 1.2e-06 58.9 269 25.3
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 1.2e-06 58.9 289 24.6
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 1.5e-06 58.5 223 27.4
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 2.6e-06 57.8 223 27.4
Oeu031853.1 Olea europaea HOM05D005919 ORTHO05D007176 3.4e-06 57.4 218 27.5
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 7.5e-06 56.2 219 26.5
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 7.5e-06 56.2 219 26.5


User provided reference genes

Program Settings