Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 3.7e-146 521.5 271 100.0
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 8.1e-117 424.1 275 83.3
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 5.8e-107 391.3 272 79.4
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 5.8e-107 391.3 272 79.0
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 4.2e-105 385.2 229 90.0
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 1.5e-102 376.7 270 77.4
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 2.2e-101 372.9 270 76.7
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 8.2e-101 370.9 275 76.7
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 1.1e-100 370.5 269 75.8
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 9.0e-100 367.5 269 75.5
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 4.1e-76 288.9 221 74.2
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 4.7e-72 275.4 266 62.4
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 4.7e-72 275.4 267 59.9
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 1.4e-71 273.9 267 59.6
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 2.3e-71 273.1 265 59.2
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 3.0e-71 272.7 264 60.2
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 5.7e-70 268.5 261 60.2
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 1.3e-69 267.3 258 61.2
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 3.7e-69 265.8 265 59.6
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 3.7e-69 265.8 261 56.3
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 4.8e-69 265.4 261 58.2
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 6.3e-69 265.0 264 57.6
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 8.2e-69 264.6 263 58.9
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 1.1e-68 264.2 261 57.9
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 1.4e-68 263.8 261 57.5
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 2.4e-68 263.1 263 59.7
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 5.3e-68 261.9 264 57.2
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 5.3e-68 261.9 264 56.8
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 7.0e-68 261.5 259 57.5
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 7.0e-68 261.5 261 59.0
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 1.6e-67 260.4 261 59.0
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 1.6e-67 260.4 260 59.2
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 1.6e-67 260.4 266 57.9
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.0e-67 260.0 264 58.0
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 2.7e-67 259.6 261 57.9
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 2.7e-67 259.6 262 58.8
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 5.9e-67 258.5 261 58.2
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 5.9e-67 258.5 260 56.9
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 7.7e-67 258.1 264 57.6
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 7.7e-67 258.1 264 57.6
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 1.0e-66 257.7 260 58.1
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 1.3e-66 257.3 261 59.0
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 1.3e-66 257.3 231 63.2
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 1.7e-66 256.9 262 57.6
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.9e-66 256.1 233 61.8
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 5.0e-66 255.4 264 56.4
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 6.5e-66 255.0 259 57.5
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 6.5e-66 255.0 261 57.1
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 1.1e-65 254.2 261 57.9
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 1.9e-65 253.4 261 55.6
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 2.5e-65 253.1 261 55.9
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 4.2e-65 252.3 230 62.6
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 4.2e-65 252.3 259 57.1
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 7.2e-65 251.5 261 57.9
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 9.4e-65 251.1 262 55.7
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 9.4e-65 251.1 261 57.5
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 1.2e-64 250.8 261 55.6
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 1.2e-64 250.8 230 60.4
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 1.6e-64 250.4 259 56.4
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 2.1e-64 250.0 261 54.8
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 2.1e-64 250.0 235 60.4
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 2.1e-64 250.0 230 60.0
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 4.7e-64 248.8 230 63.0
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 4.7e-64 248.8 265 52.8
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 4.7e-64 248.8 230 62.2
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 6.1e-64 248.4 230 59.6
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 8.0e-64 248.1 262 56.1
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 8.0e-64 248.1 259 56.4
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 1.8e-63 246.9 263 54.4
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 3.0e-63 246.1 287 54.4
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 5.2e-63 245.4 154 80.5
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 8.8e-63 244.6 266 57.9
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 2.0e-62 243.4 261 55.2
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 3.4e-62 242.7 226 60.6
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 4.4e-62 242.3 266 57.5
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 5.7e-62 241.9 266 54.1
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 7.5e-62 241.5 156 78.2
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 1.3e-61 240.7 252 55.2
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 2.8e-61 239.6 263 54.4
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 6.3e-61 238.4 154 78.6
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 8.3e-61 238.0 230 57.4
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 1.1e-60 237.7 213 63.4
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 3.1e-60 236.1 269 50.6
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 3.1e-60 236.1 269 50.6
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 5.4e-60 235.3 225 58.2
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 7.0e-60 235.0 264 53.4
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 4.5e-59 232.3 230 57.0
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 1.0e-58 231.1 186 68.8
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 3.8e-58 229.2 156 71.8
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 3.3e-57 226.1 253 52.6
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 5.5e-57 225.3 261 51.7
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 7.2e-57 224.9 223 56.5
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 2.8e-56 223.0 248 54.0
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 8.9e-55 218.0 152 72.4
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 1.2e-51 207.6 167 65.3
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 7.5e-46 188.3 240 50.0
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 8.3e-45 184.9 230 50.9
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 8.6e-42 174.9 170 57.6
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 8.9e-39 164.9 261 42.9
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 5.8e-38 162.2 155 56.8
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 2.4e-36 156.8 183 50.3
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 9.2e-36 154.8 169 50.9
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 1.2e-35 154.5 92 78.3
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 2.3e-34 150.2 112 67.0
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 8.6e-34 148.3 251 41.8
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 4.3e-33 146.0 153 49.7
FAN03G0019 Fragaria x ananassa HOM05D006960 ORTHO05D008699 6.2e-32 142.1 92 76.1
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 3.1e-31 139.8 193 46.1
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 5.2e-31 139.0 242 41.3
Cpa.g.sc96.27 Carica papaya HOM05D006960 ORTHO05D008699 2.8e-24 116.7 150 49.3
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 5.4e-20 102.4 157 42.0
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 3.5e-19 99.8 130 40.8
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 1.5e-17 94.4 93 53.8
PRCOL_00000953 Prasinoderma coloniale HOM05D006960 ORTHO05D008699 9.9e-14 81.6 177 33.9
Medtr5g015730 Medicago truncatula HOM05D006960 ORTHO05D008699 3.1e-07 60.1 36 75.0
CiPaw.01G076800 Carya illinoinensis HOM05D006960 ORTHO05D008699 4.0e-07 59.7 148 35.1


User provided reference genes

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