Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL9U11958 Arabidopsis lyrata HOM05D000533 ORTHO05D006151 2.7e-89 332.0 173 100.0
ATCG01090 Arabidopsis thaliana HOM05D000533 ORTHO05D006151 2.7e-89 332.0 173 100.0
C09p24660 Brassica napus HOM05D000533 ORTHO05D006151 1.2e-84 316.6 167 99.4
C09p40170 Brassica napus HOM05D000533 ORTHO05D006151 1.2e-84 316.6 167 99.4
BolSC29t60508H Brassica oleracea HOM05D000533 ORTHO05D006151 1.2e-84 316.6 167 99.4
BolSC35t60690H Brassica oleracea HOM05D000533 ORTHO05D006151 1.2e-84 316.6 167 99.4
BolSC35t60706H Brassica oleracea HOM05D000533 ORTHO05D006151 1.2e-84 316.6 167 99.4
BraSC143t45658Z Brassica rapa HOM05D000533 ORTHO05D006151 1.2e-84 316.6 167 99.4
BraSC59t46553Z Brassica rapa HOM05D000533 ORTHO05D006151 1.2e-84 316.6 167 99.4
BolC2t10613H Brassica oleracea HOM05D000533 ORTHO05D006151 3.4e-84 315.1 167 98.8
BolSC46t60956H Brassica oleracea HOM05D000533 ORTHO05D006151 3.8e-83 311.6 167 98.2
BolSC47t61063H Brassica oleracea HOM05D000533 ORTHO05D006151 2.4e-82 308.9 168 97.6
C02p28830 Brassica napus HOM05D000533 ORTHO05D006151 3.0e-80 302.0 167 95.8
PGR111G0107 Punica granatum HOM05D000533 ORTHO05D006151 1.5e-79 299.7 165 95.2
Peaxi162Scf00030g02119 Petunia axillaris HOM05D000533 ORTHO05D006151 7.3e-79 297.4 166 94.6
Peaxi162Scf00269g01411 Petunia axillaris HOM05D000533 ORTHO05D006151 7.3e-79 297.4 166 94.6
PSO548G0083 Papaver somniferum HOM05D000533 ORTHO05D006151 2.1e-78 295.8 172 90.1
RcHm_v2.0_CPg0502751 Rosa chinensis HOM05D000533 ORTHO05D006151 2.8e-78 295.4 166 92.8
BolSC45t60907H Brassica oleracea HOM05D000533 ORTHO05D006151 8.1e-78 293.9 160 96.9
HanXRQChr00c0336g0573681 Helianthus annuus HOM05D000533 ORTHO05D006151 1.4e-77 293.1 165 92.7
HanXRQChr02g0059731 Helianthus annuus HOM05D000533 ORTHO05D006151 1.4e-77 293.1 165 92.7
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 1.4e-77 293.1 165 92.7
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 1.4e-77 293.1 165 92.7
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 1.4e-77 293.1 165 92.7
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 1.4e-77 293.1 165 92.7
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 1.4e-77 293.1 165 92.7
RcHm_v2.0_Chr5g0017191 Rosa chinensis HOM05D000533 ORTHO05D006151 1.4e-77 293.1 166 92.2
CAN.G1045.11 Capsicum annuum HOM05D000533 ORTHO05D006151 1.5e-76 289.7 166 92.8
CAN.G1298.19 Capsicum annuum HOM05D000533 ORTHO05D006151 1.5e-76 289.7 166 92.8
CAN.G1526.2 Capsicum annuum HOM05D000533 ORTHO05D006151 1.5e-76 289.7 166 92.8
CAN.G278.1 Capsicum annuum HOM05D000533 ORTHO05D006151 1.5e-76 289.7 166 92.8
CAN.G413.10 Capsicum annuum HOM05D000533 ORTHO05D006151 1.5e-76 289.7 166 92.8
CAN.G939.4 Capsicum annuum HOM05D000533 ORTHO05D006151 1.5e-76 289.7 166 92.8
TAR625G0707 Trochodendron aralioides HOM05D000533 ORTHO05D006151 2.0e-76 289.3 165 92.7
Nn031s41615 Nelumbo nucifera HOM05D000533 ORTHO05D006151 4.4e-76 288.1 165 91.5
Nn064s42208 Nelumbo nucifera HOM05D000533 ORTHO05D006151 4.4e-76 288.1 165 91.5
Ciclev10013971m.g Citrus clementina HOM05D000533 ORTHO05D006151 5.8e-76 287.7 166 90.4
Ciclev10013973m.g Citrus clementina HOM05D000533 ORTHO05D006151 5.8e-76 287.7 166 90.4
Lalb_Chr07g0191791 Lupinus albus HOM05D000533 ORTHO05D006151 1.7e-75 286.2 158 95.6
Migut.D01250 Erythranthe guttata HOM05D000533 ORTHO05D006151 2.2e-75 285.8 167 91.0
Solyc03g013615.1 Solanum lycopersicum HOM05D000533 ORTHO05D006151 3.8e-75 285.0 166 82.5
HanXRQChr09g0258491 Helianthus annuus HOM05D000533 ORTHO05D006151 2.4e-74 282.3 157 94.3
LjContig00318g0022534 Lotus japonicus HOM05D000533 ORTHO05D006151 4.2e-74 281.6 158 94.3
LjContig00319g0019672 Lotus japonicus HOM05D000533 ORTHO05D006151 4.2e-74 281.6 158 94.3
Psat0s6989g0200 Pisum sativum HOM05D000533 ORTHO05D006151 4.2e-74 281.6 158 93.0
Psat6g140600 Pisum sativum HOM05D000533 ORTHO05D006151 4.2e-74 281.6 158 93.0
Psat6g140640 Pisum sativum HOM05D000533 ORTHO05D006151 4.2e-74 281.6 158 93.0
Medtr3g450170 Medicago truncatula HOM05D000533 ORTHO05D006151 1.2e-73 280.0 158 93.0
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 1.2e-73 280.0 158 93.0
Medtr6g042210 Medicago truncatula HOM05D000533 ORTHO05D006151 1.2e-73 280.0 158 93.0
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 1.2e-73 280.0 158 93.0
Psat3g095000 Pisum sativum HOM05D000533 ORTHO05D006151 2.1e-73 279.3 158 92.4
DCAR_018912 Daucus carota HOM05D000533 ORTHO05D006151 1.0e-72 276.9 162 89.5
DCAR_032540 Daucus carota HOM05D000533 ORTHO05D006151 1.0e-72 276.9 162 89.5
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 1.9e-71 272.7 164 85.4
Gohir.A08G123600 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.5e-71 272.3 165 79.4
SalBow1G0791 Salvia bowleyana HOM05D000533 ORTHO05D006151 7.3e-71 270.8 167 86.2
Psat4g190120 Pisum sativum HOM05D000533 ORTHO05D006151 8.1e-70 267.3 158 89.2
Lj2P1238T111 Lonicera japonica HOM05D000533 ORTHO05D006151 1.4e-66 256.5 165 84.2
Lju5009P0T51 Lonicera japonica HOM05D000533 ORTHO05D006151 1.4e-66 256.5 165 84.2
QL93p0141_0017 Quercus lobata HOM05D000533 ORTHO05D006151 1.4e-66 256.5 165 83.6
Nn1g00559 Nelumbo nucifera HOM05D000533 ORTHO05D006151 3.0e-64 248.8 157 86.6
Medtr4g050810 Medicago truncatula HOM05D000533 ORTHO05D006151 7.4e-63 244.2 158 76.6
HanXRQChr00c0718g0576981 Helianthus annuus HOM05D000533 ORTHO05D006151 2.8e-62 242.3 165 73.3
Solyc11g021220.2 Solanum lycopersicum HOM05D000533 ORTHO05D006151 6.2e-62 241.1 146 80.1
Gohir.A09G046292 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.4e-61 240.0 165 80.0
HanXRQChr13g0413911 Helianthus annuus HOM05D000533 ORTHO05D006151 5.8e-60 234.6 140 89.3
HanXRQChr13g0413691 Helianthus annuus HOM05D000533 ORTHO05D006151 4.9e-59 231.5 140 88.6
HanXRQChr13g0413761 Helianthus annuus HOM05D000533 ORTHO05D006151 4.9e-59 231.5 140 88.6
HanXRQChr13g0413841 Helianthus annuus HOM05D000533 ORTHO05D006151 4.9e-59 231.5 140 88.6
Medtr3g054410 Medicago truncatula HOM05D000533 ORTHO05D006151 5.5e-58 228.0 133 81.2
Aqoxy4G02725 Aquilegia oxysepala HOM05D000533 ORTHO05D006151 1.6e-57 226.5 129 92.2
HanXRQChr00c0495g0575151 Helianthus annuus HOM05D000533 ORTHO05D006151 1.1e-55 220.3 155 72.3
Mapoly0048s0041 Marchantia polymorpha HOM05D000533 ORTHO05D006151 7.4e-55 217.6 167 63.5
TPR.G38950 Trifolium pratense HOM05D000533 ORTHO05D006151 9.6e-55 217.2 128 80.5
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 1.3e-54 216.9 154 78.6
C07p33460 Brassica napus HOM05D000533 ORTHO05D006151 1.6e-54 216.5 129 91.5
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 3.4e-52 208.8 102 94.1
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 3.4e-52 208.8 102 94.1
Gohir.1Z049779 Gossypium hirsutum HOM05D000533 ORTHO05D006151 4.5e-52 208.4 139 84.2
HanXRQChr00c0504g0575311 Helianthus annuus HOM05D000533 ORTHO05D006151 7.6e-52 207.6 102 94.1
CSS0023353 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D006151 8.4e-51 204.1 119 90.8
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 8.4e-51 204.1 99 94.9
Medtr5g015855 Medicago truncatula HOM05D000533 ORTHO05D006151 1.1e-50 203.8 130 86.9
HanXRQChr13g0421831 Helianthus annuus HOM05D000533 ORTHO05D006151 2.1e-49 199.5 117 91.5
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 3.5e-49 198.7 125 88.8
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 3.5e-49 198.7 125 88.8
BolSC29t60548H Brassica oleracea HOM05D000533 ORTHO05D006151 6.1e-49 198.0 94 97.9
BolSC49t61145H Brassica oleracea HOM05D000533 ORTHO05D006151 7.9e-49 197.6 94 97.9
BraSC103t45431Z Brassica rapa HOM05D000533 ORTHO05D006151 7.9e-49 197.6 94 97.9
Lsat_1_v5_gn_4_118101 Lactuca sativa HOM05D000533 ORTHO05D006151 7.9e-49 197.6 139 71.9
C09p40320 Brassica napus HOM05D000533 ORTHO05D006151 1.0e-48 197.2 92 100.0
CARHR282460 Cardamine hirsuta HOM05D000533 ORTHO05D006151 1.0e-48 197.2 92 100.0
BraSC179t45772Z Brassica rapa HOM05D000533 ORTHO05D006151 3.9e-48 195.3 94 96.8
BolSC44t60824H Brassica oleracea HOM05D000533 ORTHO05D006151 5.1e-48 194.9 91 100.0
Gohir.D11G334051 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.1e-47 193.7 97 91.8
Psat1g104880 Pisum sativum HOM05D000533 ORTHO05D006151 3.3e-47 192.2 97 91.8
Manes.17G012402 Manihot esculenta HOM05D000533 ORTHO05D006151 7.4e-47 191.0 162 63.6
Nitab4.5_0007979g0080 Nicotiana tabacum HOM05D000533 ORTHO05D006151 9.7e-47 190.7 140 71.4
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 4.1e-45 185.3 95 88.4
Gohir.A04G053104 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.0e-44 183.0 92 91.3
Gohir.A06G128502 Gossypium hirsutum HOM05D000533 ORTHO05D006151 5.9e-44 181.4 99 84.8
Gohir.D06G133750 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.8e-43 178.7 91 89.0
HanXRQChr15g0464661 Helianthus annuus HOM05D000533 ORTHO05D006151 1.2e-41 173.7 100 94.0
HanXRQChr01g0000261 Helianthus annuus HOM05D000533 ORTHO05D006151 2.1e-41 172.9 101 93.1
Gohir.D03G073128 Gossypium hirsutum HOM05D000533 ORTHO05D006151 4.6e-41 171.8 94 85.1
Ciclev10010202m.g Citrus clementina HOM05D000533 ORTHO05D006151 3.9e-40 168.7 124 66.9
Gohir.A11G178850 Gossypium hirsutum HOM05D000533 ORTHO05D006151 6.7e-40 167.9 95 82.1
Solyc02g011780.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 1.5e-39 166.8 140 62.9
Peaxi162Scf00137g00153 Petunia axillaris HOM05D000533 ORTHO05D006151 1.3e-38 163.7 98 80.6
Glyma.18G155500 Glycine max HOM05D000533 ORTHO05D006151 1.7e-38 163.3 92 79.3
SMO086G0041 Selaginella moellendorffii HOM05D000533 ORTHO05D006151 4.8e-38 161.8 165 50.9
Gorai.002G166200 Gossypium raimondii HOM05D000533 ORTHO05D006151 3.1e-37 159.1 95 76.8
HanXRQChr05g0152461 Helianthus annuus HOM05D000533 ORTHO05D006151 4.1e-37 158.7 92 81.5
Medtr5g063400 Medicago truncatula HOM05D000533 ORTHO05D006151 6.9e-37 157.9 94 80.9
arahy.Tifrunner.gnm1.ann1.92D98S Arachis hypogaea HOM05D000533 ORTHO05D006151 2.9e-35 152.5 92 79.3
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 2.9e-35 152.5 92 79.3
arahy.Tifrunner.gnm1.ann1.JR5HFJ Arachis hypogaea HOM05D000533 ORTHO05D006151 2.9e-35 152.5 92 79.3
Psat0s411g0080 Pisum sativum HOM05D000533 ORTHO05D006151 2.9e-35 152.5 91 80.2
QL93p0957_0002 Quercus lobata HOM05D000533 ORTHO05D006151 5.0e-35 151.8 81 87.7
GSVIVG01029923001 Vitis vinifera HOM05D000533 ORTHO05D006151 5.5e-34 148.3 85 80.0
HanXRQChr00c0328g0573621 Helianthus annuus HOM05D000533 ORTHO05D006151 9.4e-34 147.5 76 92.1
Lalb_Chr09g0335441 Lupinus albus HOM05D000533 ORTHO05D006151 2.7e-33 146.0 158 51.9
Ciclev10030456m.g Citrus clementina HOM05D000533 ORTHO05D006151 6.7e-32 141.4 72 90.3
Haze_27676 Corylus avellana HOM05D000533 ORTHO05D006151 1.5e-31 140.2 90 74.4
HanXRQChr02g0037961 Helianthus annuus HOM05D000533 ORTHO05D006151 2.6e-31 139.4 105 69.5
Psat0s1160g0360 Pisum sativum HOM05D000533 ORTHO05D006151 6.3e-30 134.8 69 91.3
MELO3C000180.2 Cucumis melo HOM05D000533 ORTHO05D006151 1.1e-29 134.0 65 93.8
Lsat_1_v5_gn_6_54141 Lactuca sativa HOM05D000533 ORTHO05D006151 7.0e-29 131.3 117 63.2
MELO3C031835.2 Cucumis melo HOM05D000533 ORTHO05D006151 5.0e-27 125.2 65 86.2
Migut.D01385 Erythranthe guttata HOM05D000533 ORTHO05D006151 4.7e-25 118.6 159 46.5
HanXRQChr01g0020061 Helianthus annuus HOM05D000533 ORTHO05D006151 5.2e-24 115.2 76 72.4
BolSC37t60795H Brassica oleracea HOM05D000533 ORTHO05D006151 2.0e-23 113.2 54 100.0
BolC2t10598H Brassica oleracea HOM05D000533 ORTHO05D006151 5.7e-23 111.7 54 98.1
BolC9t56914H Brassica oleracea HOM05D000533 ORTHO05D006151 7.5e-23 111.3 53 100.0
HanXRQChr02g0037941 Helianthus annuus HOM05D000003 ORTHO05D000004 1.3e-22 110.5 76 73.7
BolC2t08928H Brassica oleracea HOM05D000533 ORTHO05D006151 4.8e-22 108.6 53 98.1
ClCG07G005240 Citrullus lanatus HOM05D000533 ORTHO05D006151 5.3e-21 105.1 89 56.2
BraSC138t45533Z Brassica rapa HOM05D000533 ORTHO05D006151 1.6e-20 103.6 76 68.4
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 1.1e-18 97.4 72 68.1
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 1.5e-18 97.1 74 67.6
BraSC58t46463Z Brassica rapa HOM05D000533 ORTHO05D006151 1.9e-18 96.7 45 100.0
Lalb_Chr19g0130301 Lupinus albus HOM05D000533 ORTHO05D006151 1.9e-18 96.7 81 58.0
Solyc01g086880.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 4.2e-18 95.5 70 62.9
MELO3C029885.2 Cucumis melo HOM05D000533 ORTHO05D006151 8.0e-17 91.3 48 87.5
Eucgr.H02873 Eucalyptus grandis HOM05D000533 ORTHO05D006151 6.8e-16 88.2 64 62.5
Potri.013G074950 Populus trichocarpa HOM05D000533 ORTHO05D006151 1.2e-15 87.4 47 80.9
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 3.4e-15 85.9 43 93.0
BraSC25t45912Z Brassica rapa HOM05D000533 ORTHO05D006151 4.4e-15 85.5 45 86.7
Medtr4g070120 Medicago truncatula HOM05D000533 ORTHO05D006151 4.8e-14 82.0 114 43.0
BolSC37t60802H Brassica oleracea HOM05D000533 ORTHO05D006151 1.1e-13 80.9 48 87.5
Gohir.D01G099050 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.1e-13 79.3 40 92.5
Haze_02267 Corylus avellana HOM05D000533 ORTHO05D006151 2.7e-12 76.3 62 61.3
Lalb_Chr18g0049621 Lupinus albus HOM05D000533 ORTHO05D006151 2.7e-12 76.3 55 65.5
Hund17909 Selenicereus undatus HOM05D000533 ORTHO05D006151 6.5e-11 71.6 49 67.3
Medtr8g086030 Medicago truncatula HOM05D000533 ORTHO05D006151 5.5e-10 68.6 52 63.5
Aa31LG5G21720 Aethionema arabicum HOM05D000533 ORTHO05D006151 1.0e-08 64.3 129 39.5
RcHm_v2.0_Chr2g0140171 Rosa chinensis HOM05D007741 ORTHO05D015647 7.5e-07 58.2 37 73.0
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 2.2e-06 56.6 121 39.7
Atru.chr9.2056 Acer truncatum HOM05D001098 ORTHO05D002527 8.3e-06 54.7 25 96.0


User provided reference genes

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