Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL9U11956 Arabidopsis lyrata HOM05D007371 ORTHO05D009319 1.0e-88 330.1 177 100.0
ATCG01080 Arabidopsis thaliana HOM05D007371 ORTHO05D009319 4.4e-87 324.7 177 98.3
CARHR282450 Cardamine hirsuta HOM05D007371 ORTHO05D009319 7.0e-85 317.4 177 97.2
C09p24650 Brassica napus HOM05D007371 ORTHO05D009319 2.7e-84 315.5 177 95.5
C09p40180 Brassica napus HOM05D007371 ORTHO05D009319 2.7e-84 315.5 177 95.5
BolC2t10597H Brassica oleracea HOM05D007371 ORTHO05D009319 2.7e-84 315.5 177 95.5
BolSC29t60507H Brassica oleracea HOM05D007371 ORTHO05D009319 2.7e-84 315.5 177 95.5
BolSC29t60622H Brassica oleracea HOM05D007371 ORTHO05D009319 2.7e-84 315.5 177 95.5
BolSC37t60794H Brassica oleracea HOM05D007371 ORTHO05D009319 2.7e-84 315.5 177 95.5
BolSC47t61064H Brassica oleracea HOM05D007371 ORTHO05D009319 2.7e-84 315.5 177 95.5
BraA10t43431Z Brassica rapa HOM05D007371 ORTHO05D009319 2.7e-84 315.5 177 95.5
BraSC103t45430Z Brassica rapa HOM05D007371 ORTHO05D009319 2.7e-84 315.5 177 95.5
BraSC179t45773Z Brassica rapa HOM05D007371 ORTHO05D009319 2.7e-84 315.5 177 95.5
BraSC59t46552Z Brassica rapa HOM05D007371 ORTHO05D009319 2.7e-84 315.5 177 95.5
BolC9t56922H Brassica oleracea HOM05D007371 ORTHO05D009319 8.9e-80 300.4 177 91.0
Gohir.1Z049431 Gossypium hirsutum HOM05D007371 ORTHO05D009319 4.5e-76 288.1 177 85.3
Gohir.1Z049679 Gossypium hirsutum HOM05D007371 ORTHO05D009319 4.5e-76 288.1 177 85.3
Gohir.A02G134600 Gossypium hirsutum HOM05D007371 ORTHO05D009319 4.5e-76 288.1 177 85.3
PGR111G0032 Punica granatum HOM05D007371 ORTHO05D009319 2.3e-75 285.8 177 86.4
DCAR_032539 Daucus carota HOM05D007371 ORTHO05D009319 6.6e-75 284.3 177 84.7
Nn064s42209 Nelumbo nucifera HOM05D007371 ORTHO05D009319 6.6e-75 284.3 177 84.2
Gohir.A09G046246 Gossypium hirsutum HOM05D007371 ORTHO05D009319 3.3e-74 282.0 177 83.6
Nn3g20215 Nelumbo nucifera HOM05D007371 ORTHO05D009319 2.1e-73 279.3 177 83.1
RcHm_v2.0_Chr5g0017201 Rosa chinensis HOM05D007371 ORTHO05D009319 1.8e-72 276.2 177 83.1
RcHm_v2.0_CPg0502761 Rosa chinensis HOM05D007371 ORTHO05D009319 1.8e-72 276.2 177 83.1
Migut.D01251 Erythranthe guttata HOM05D007371 ORTHO05D009319 2.3e-72 275.8 177 81.9
HanXRQChr00c0289g0573141 Helianthus annuus HOM05D007371 ORTHO05D009319 5.2e-72 274.6 177 81.9
HanXRQChr02g0059721 Helianthus annuus HOM05D007371 ORTHO05D009319 5.2e-72 274.6 177 81.9
HanXRQChr09g0258501 Helianthus annuus HOM05D007371 ORTHO05D009319 5.2e-72 274.6 177 81.9
HanXRQChr15g0465431 Helianthus annuus HOM05D007371 ORTHO05D009319 5.2e-72 274.6 177 81.9
HanXRQChr15g0465461 Helianthus annuus HOM05D007371 ORTHO05D009319 5.2e-72 274.6 177 81.9
HanXRQChr17g0569751 Helianthus annuus HOM05D007371 ORTHO05D009319 5.2e-72 274.6 177 81.9
HanXRQCPg0580341 Helianthus annuus HOM05D007371 ORTHO05D009319 5.2e-72 274.6 177 81.9
PSO548G0046 Papaver somniferum HOM05D007371 ORTHO05D009319 1.2e-71 273.5 177 83.1
SalBow1G7973 Salvia bowleyana HOM05D007371 ORTHO05D009319 1.5e-71 273.1 177 80.8
Lalb_Chr07g0191781 Lupinus albus HOM05D007371 ORTHO05D009319 9.8e-71 270.4 177 82.5
CAN.G1526.6 Capsicum annuum HOM05D007371 ORTHO05D009319 1.3e-70 270.0 177 80.8
CAN.G278.2 Capsicum annuum HOM05D007371 ORTHO05D009319 1.3e-70 270.0 177 80.8
CAN.G939.5 Capsicum annuum HOM05D007371 ORTHO05D009319 1.3e-70 270.0 177 80.8
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 2.9e-70 268.9 176 81.2
RcHm_v2.0_Chr5g0043021 Rosa chinensis HOM05D007371 ORTHO05D009319 2.9e-70 268.9 177 81.4
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 1.1e-69 266.9 176 80.7
Lj2P1238T112 Lonicera japonica HOM05D007371 ORTHO05D009319 1.9e-69 266.2 177 79.7
Lju5009P0T52 Lonicera japonica HOM05D007371 ORTHO05D009319 1.9e-69 266.2 177 79.7
Medtr6g042220 Medicago truncatula HOM05D007371 ORTHO05D009319 1.9e-69 266.2 177 80.8
Lj9P89T22 Lonicera japonica HOM05D007371 ORTHO05D009319 4.6e-68 261.5 177 78.0
CAN.G965.5 Capsicum annuum HOM05D007371 ORTHO05D009319 3.0e-67 258.8 177 78.0
Peaxi162Scf00338g00628 Petunia axillaris HOM05D007371 ORTHO05D009319 8.6e-67 257.3 177 79.1
TAR625G0296 Trochodendron aralioides HOM05D007371 ORTHO05D009319 8.6e-67 257.3 177 77.4
Solyc03g013600.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 1.5e-66 256.5 177 78.0
Gohir.D04G175100 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.2e-65 253.4 153 84.3
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 2.3e-64 249.2 176 77.8
HanXRQChr17g0569721 Helianthus annuus HOM05D007371 ORTHO05D009319 3.4e-63 245.4 162 80.2
Nn1g08633 Nelumbo nucifera HOM05D007371 ORTHO05D009319 1.1e-61 240.4 162 77.2
Solyc02g011770.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 3.5e-60 235.3 177 71.8
Gohir.D12G089301 Gossypium hirsutum HOM05D007371 ORTHO05D009319 2.5e-58 229.2 152 80.3
BraSC143t45659Z Brassica rapa HOM05D007371 ORTHO05D009319 9.2e-53 210.7 124 90.3
Gohir.D06G133700 Gossypium hirsutum HOM05D007371 ORTHO05D009319 7.3e-50 201.1 161 70.2
Solyc07g026910.3 Solanum lycopersicum HOM05D007371 ORTHO05D009319 1.6e-49 199.9 137 75.2
BolSC46t60957H Brassica oleracea HOM05D007371 ORTHO05D009319 1.1e-48 197.2 111 93.7
BolSC29t60547H Brassica oleracea HOM05D007371 ORTHO05D009319 1.4e-48 196.8 109 95.4
BolSC35t60691H Brassica oleracea HOM05D007371 ORTHO05D009319 1.4e-48 196.8 109 95.4
BolSC56t61236H Brassica oleracea HOM05D007371 ORTHO05D009319 1.4e-48 196.8 109 95.4
BolSC45t60908H Brassica oleracea HOM05D007371 ORTHO05D009319 2.4e-48 196.1 110 93.6
CAN.G256.22 Capsicum annuum HOM05D007371 ORTHO05D009319 2.6e-47 192.6 141 71.6
BolSC35t60705H Brassica oleracea HOM05D007371 ORTHO05D009319 2.7e-44 182.6 99 94.9
Glyma.19G081000 Glycine max HOM05D007371 ORTHO05D009319 3.5e-44 182.2 150 68.7
Potri.013G075100 Populus trichocarpa HOM05D007371 ORTHO05D009319 9.6e-42 174.1 118 74.6
BolSC49t61144H Brassica oleracea HOM05D007371 ORTHO05D009319 1.6e-41 173.3 98 94.9
BraSC25t45911Z Brassica rapa HOM05D007371 ORTHO05D009319 2.1e-41 172.9 93 94.6
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 2.8e-41 172.6 117 76.1
C09p40330 Brassica napus HOM05D007371 ORTHO05D009319 2.4e-40 169.5 100 92.0
C02p24280 Brassica napus HOM05D007371 ORTHO05D009319 9.0e-40 167.5 128 72.7
Nn031s41614 Nelumbo nucifera HOM05D007371 ORTHO05D009319 2.2e-38 162.9 99 80.8
BraSC138t45534Z Brassica rapa HOM05D007371 ORTHO05D009319 1.1e-37 160.6 110 81.8
Gohir.A03G146201 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.4e-37 160.2 163 58.3
Thecc.08G131100 Theobroma cacao HOM05D007371 ORTHO05D009319 1.9e-37 159.8 99 80.8
CAN.G262.7 Capsicum annuum HOM05D007371 ORTHO05D009319 5.4e-37 158.3 119 71.4
HanXRQChr00c0336g0573671 Helianthus annuus HOM05D007371 ORTHO05D009319 5.4e-37 158.3 99 78.8
BolC2t10612H Brassica oleracea HOM05D007371 ORTHO05D009319 1.5e-34 150.2 84 96.4
HanXRQChr01g0000251 Helianthus annuus HOM05D007371 ORTHO05D009319 9.6e-34 147.5 157 60.5
Nitab4.5_0007979g0070 Nicotiana tabacum HOM05D007371 ORTHO05D009319 2.8e-33 146.0 177 53.7
Gorai.013G109900 Gossypium raimondii HOM05D007371 ORTHO05D009319 8.1e-33 144.4 98 76.5
Gorai.005G189900 Gossypium raimondii HOM05D007371 ORTHO05D009319 2.0e-31 139.8 94 73.4
BraSC58t46462Z Brassica rapa HOM05D007371 ORTHO05D009319 2.6e-31 139.4 75 90.7
Hma1.2p1_0656F.1_g196806 Hydrangea macrophylla HOM05D007371 ORTHO05D009319 2.4e-29 132.9 84 85.7
Gohir.D02G169550 Gossypium hirsutum HOM05D007371 ORTHO05D009319 9.3e-29 131.0 96 69.8
Gohir.D07G194033 Gossypium hirsutum HOM05D007371 ORTHO05D009319 4.3e-26 122.1 76 81.6
HanXRQChr05g0152451 Helianthus annuus HOM05D007371 ORTHO05D009319 4.3e-26 122.1 74 75.7
HanXRQChr08g0211951 Helianthus annuus HOM05D007371 ORTHO05D009319 4.3e-26 122.1 74 75.7
arahy.Tifrunner.gnm1.ann1.5E4H9C Arachis hypogaea HOM05D007371 ORTHO05D009319 9.6e-26 120.9 84 79.8
Solyc11g021217.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 9.6e-26 120.9 90 75.6
HanXRQChr00c0703g0576941 Helianthus annuus HOM05D007371 ORTHO05D009319 1.8e-24 116.7 75 85.3
RcHm_v2.0_Chr4g0438011 Rosa chinensis HOM05D007371 ORTHO05D009319 1.1e-21 107.5 60 90.0
SMO086G0016 Selaginella moellendorffii HOM05D007371 ORTHO05D009319 1.9e-21 106.7 176 43.8
Aa31LG5G21710 Aethionema arabicum HOM05D007371 ORTHO05D009319 1.2e-20 104.0 91 74.7
BolC7t43856H Brassica oleracea HOM05D007371 ORTHO05D009319 2.7e-20 102.8 56 92.9
arahy.Tifrunner.gnm1.ann1.4VL02K Arachis hypogaea HOM05D001200 ORTHO05D009778 5.1e-19 98.6 74 73.0
arahy.Tifrunner.gnm1.ann1.9I8ZI2 Arachis hypogaea HOM05D001200 ORTHO05D009778 5.1e-19 98.6 74 73.0
arahy.Tifrunner.gnm1.ann1.V71EA1 Arachis hypogaea HOM05D001200 ORTHO05D009778 5.1e-19 98.6 74 73.0
HanXRQChr02g0037971 Helianthus annuus HOM05D007371 ORTHO05D009319 6.7e-19 98.2 82 69.5
arahy.Tifrunner.gnm1.ann1.UDKX9E Arachis hypogaea HOM05D000890 ORTHO05D000697 1.1e-18 97.4 67 68.7
Lalb_Chr09g0335451 Lupinus albus HOM05D007371 ORTHO05D009319 9.6e-18 94.4 65 76.9
HanXRQChr11g0323761 Helianthus annuus HOM05D007371 ORTHO05D009319 2.6e-15 86.3 87 65.5
Mapoly0048s0040 Marchantia polymorpha HOM05D007371 ORTHO05D009319 3.8e-14 82.4 99 45.5
Lsat_1_v5_gn_6_54121 Lactuca sativa HOM05D007371 ORTHO05D009319 2.7e-12 76.3 48 81.2
HanXRQChr02g0038001 Helianthus annuus HOM05D007371 ORTHO05D009319 2.3e-11 73.2 61 67.2
Lalb_Chr11g0071331 Lupinus albus HOM05D007371 ORTHO05D009319 4.3e-10 68.9 69 59.4
CsaV3_UNG210150 Cucumis sativus L. HOM05D001200 ORTHO05D009713 7.4e-10 68.2 45 75.6
Haze_02268 Corylus avellana HOM05D007371 ORTHO05D009319 1.7e-06 57.0 42 71.4


User provided reference genes

Program Settings