Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 1.9e-124 449.1 222 100.0
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 2.5e-92 342.4 223 78.0
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 1.9e-79 299.7 215 72.1
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 1.9e-79 299.7 212 74.1
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 1.9e-79 299.7 209 74.6
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 4.2e-79 298.5 212 73.6
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 4.2e-79 298.5 212 73.6
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 4.2e-79 298.5 213 75.1
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 2.2e-75 286.2 202 74.3
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 3.7e-75 285.4 229 68.1
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 2.2e-67 259.6 223 65.5
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 8.5e-64 247.7 164 77.4
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 3.4e-60 235.7 127 90.6
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 1.3e-56 223.8 199 63.3
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 1.2e-49 200.7 213 54.0
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 1.2e-49 200.7 202 57.9
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 3.5e-49 199.1 209 56.0
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 2.3e-48 196.4 217 53.5
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 6.6e-48 194.9 211 55.0
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 1.1e-47 194.1 205 55.1
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 1.5e-47 193.7 201 55.2
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 1.5e-47 193.7 205 55.1
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 2.5e-47 193.0 221 51.6
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 3.3e-47 192.6 215 53.0
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 4.3e-47 192.2 211 53.6
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 4.3e-47 192.2 203 54.2
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 7.3e-47 191.4 235 50.6
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 7.3e-47 191.4 215 52.6
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 7.3e-47 191.4 207 53.6
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 9.5e-47 191.0 203 54.7
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.2e-46 190.7 214 52.3
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.6e-46 190.3 215 52.6
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.1e-46 189.9 210 54.8
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 2.1e-46 189.9 210 54.8
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 2.8e-46 189.5 200 54.0
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 2.8e-46 189.5 200 52.0
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 2.8e-46 189.5 200 52.0
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 2.8e-46 189.5 220 50.9
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 3.6e-46 189.1 201 52.7
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 3.6e-46 189.1 211 54.0
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 3.6e-46 189.1 202 53.5
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 4.7e-46 188.7 207 51.7
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.7e-46 188.7 211 53.6
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 6.2e-46 188.3 203 52.7
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 6.2e-46 188.3 200 51.5
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 6.2e-46 188.3 211 54.5
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 6.2e-46 188.3 200 54.0
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 8.0e-46 188.0 219 52.1
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 8.0e-46 188.0 202 54.0
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.0e-45 187.6 214 51.4
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 1.4e-45 187.2 204 52.5
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 1.4e-45 187.2 204 51.5
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 1.8e-45 186.8 212 53.3
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 1.8e-45 186.8 205 54.1
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 1.8e-45 186.8 200 52.5
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 1.8e-45 186.8 198 53.5
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 1.8e-45 186.8 204 51.0
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 2.3e-45 186.4 200 53.0
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 2.3e-45 186.4 200 54.0
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 5.2e-45 185.3 204 52.9
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 1.2e-44 184.1 224 48.7
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 1.2e-44 184.1 200 53.0
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 1.5e-44 183.7 200 53.5
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 1.5e-44 183.7 200 52.5
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.0e-44 183.3 214 50.5
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 2.6e-44 183.0 200 51.0
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 3.4e-44 182.6 205 52.2
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 3.4e-44 182.6 210 51.0
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 5.8e-44 181.8 202 52.0
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 7.5e-44 181.4 203 52.2
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 7.5e-44 181.4 204 51.0
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 9.8e-44 181.0 199 50.8
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 9.8e-44 181.0 209 51.2
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 9.8e-44 181.0 186 55.9
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 2.9e-43 179.5 198 52.0
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 2.9e-43 179.5 224 50.4
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 8.3e-43 177.9 255 45.1
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 1.1e-42 177.6 204 50.5
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 1.1e-42 177.6 202 51.0
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 1.4e-42 177.2 222 49.1
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 2.4e-42 176.4 201 51.2
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 3.2e-42 176.0 197 49.7
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 3.2e-42 176.0 218 50.5
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 4.1e-42 175.6 216 48.1
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 5.4e-42 175.3 222 49.5
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 1.2e-41 174.1 200 50.0
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.6e-41 173.7 225 48.0
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 2.7e-41 172.9 222 47.3
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 3.5e-41 172.6 211 50.2
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 4.6e-41 172.2 206 50.5
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 4.6e-41 172.2 198 50.5
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 1.0e-40 171.0 204 50.0
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 1.0e-40 171.0 203 50.2
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 2.3e-40 169.9 215 48.4
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 2.3e-40 169.9 208 48.6
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 3.0e-40 169.5 200 50.5
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 5.0e-40 168.7 204 50.0
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 6.6e-40 168.3 207 48.3
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 6.6e-40 168.3 207 48.8
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 8.6e-40 167.9 202 50.5
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 1.1e-39 167.5 200 49.0
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 1.1e-39 167.5 125 69.6
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.1e-39 167.5 106 78.3
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 1.1e-39 167.5 223 47.5
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 3.3e-39 166.0 202 49.0
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 7.3e-39 164.9 210 47.6
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 7.3e-39 164.9 229 46.3
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 7.3e-39 164.9 105 76.2
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 9.5e-39 164.5 212 48.6
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.6e-38 163.7 102 77.5
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 2.1e-38 163.3 228 45.6
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 2.1e-38 163.3 203 49.3
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 2.1e-38 163.3 102 77.5
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 2.8e-38 162.9 194 46.9
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 3.6e-38 162.5 228 45.6
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 3.6e-38 162.5 255 42.7
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 4.7e-38 162.2 102 76.5
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 4.7e-38 162.2 102 76.5
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 6.2e-38 161.8 223 45.7
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 6.2e-38 161.8 216 46.8
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 1.4e-37 160.6 219 44.3
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 3.1e-37 159.5 106 74.5
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 5.2e-37 158.7 210 47.1
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 5.2e-37 158.7 113 69.0
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 6.8e-37 158.3 137 62.0
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 8.9e-37 157.9 202 48.0
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 1.2e-36 157.5 89 84.3
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 1.2e-36 157.5 89 84.3
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 1.2e-36 157.5 208 47.6
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 1.5e-36 157.1 197 47.7
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 1.5e-36 157.1 225 44.0
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 1.5e-36 157.1 151 55.0
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 2.0e-36 156.8 102 74.5
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 2.0e-36 156.8 110 72.7
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 5.8e-36 155.2 133 64.7
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 9.8e-36 154.5 120 65.8
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 1.3e-35 154.1 200 47.5
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 1.7e-35 153.7 160 55.0
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 1.7e-35 153.7 200 43.5
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 2.2e-35 153.3 221 45.2
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 4.9e-35 152.1 117 62.4
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 6.4e-35 151.8 196 48.0
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 8.3e-35 151.4 201 45.8
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 8.3e-35 151.4 121 64.5
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 1.1e-34 151.0 204 45.6
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 1.1e-34 151.0 226 46.0
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 1.4e-34 150.6 120 58.3
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 1.4e-34 150.6 195 44.6
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 3.2e-34 149.4 106 67.9
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 9.2e-34 147.9 197 45.2
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 7.8e-33 144.8 191 46.6
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 1.0e-32 144.4 95 71.6
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 1.8e-29 133.7 141 50.4
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 7.6e-28 128.3 128 55.5
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 9.9e-28 127.9 159 49.1
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 9.2e-26 121.3 103 61.2
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 2.1e-25 120.2 116 55.2
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 8.1e-22 108.2 79 63.3
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 1.1e-21 107.8 99 60.6
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 9.9e-20 101.3 77 66.2
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 1.3e-14 84.3 128 39.8
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 3.2e-10 69.7 107 35.5
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 5.4e-10 68.9 97 45.4
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 3.0e-08 63.2 47 59.6
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 6.2e-06 55.5 40 60.0


User provided reference genes

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