Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL9U11270 Arabidopsis lyrata HOM05D001685 ORTHO05D007488 2.1e-70 268.9 132 100.0
AL9U11240 Arabidopsis lyrata HOM05D001685 ORTHO05D007488 1.2e-68 263.1 132 98.5
AT5G18570 Arabidopsis thaliana HOM05D001685 ORTHO05D007488 1.4e-53 213.0 164 71.3
Carub.0006s1685 Capsella rubella HOM05D001685 ORTHO05D007488 6.9e-53 210.7 164 70.1
AL6G29840 Arabidopsis lyrata HOM05D001685 ORTHO05D007488 9.0e-53 210.3 164 70.1
Thhalv10012865m.g Eutrema salsugineum HOM05D001685 ORTHO05D007488 7.6e-52 207.2 164 69.5
Sp6g25760 Schrenkiella parvula HOM05D001685 ORTHO05D007488 7.6e-52 207.2 164 69.5
C02p10030 Brassica napus HOM05D001685 ORTHO05D007488 9.9e-52 206.8 164 69.5
BolC2t06905H Brassica oleracea HOM05D001685 ORTHO05D007488 9.9e-52 206.8 164 69.5
BraA02t05459Z Brassica rapa HOM05D001685 ORTHO05D007488 9.9e-52 206.8 164 69.5
BcaB05g23340 Brassica carinata HOM05D001685 ORTHO05D007488 1.3e-51 206.5 165 69.1
A02p05000 Brassica napus HOM05D001685 ORTHO05D007488 1.3e-51 206.5 165 69.1
CARHR194450 Cardamine hirsuta HOM05D001685 ORTHO05D007488 2.9e-51 205.3 165 68.5
Aa31LG11G11050 Aethionema arabicum HOM05D001685 ORTHO05D007488 3.8e-51 204.9 177 64.4
THA.LOC104802719 Tarenaya hassleriana HOM05D001685 ORTHO05D007488 3.2e-50 201.8 152 70.4
Hma1.2p1_0698F.1_g205400 Hydrangea macrophylla HOM05D001685 ORTHO05D007488 9.3e-50 200.3 156 68.6
Lalb_Chr18g0055611 Lupinus albus HOM05D001685 ORTHO05D007488 1.2e-49 199.9 152 69.7
Cpa.g.sc16.146 Carica papaya HOM05D001685 ORTHO05D007488 2.1e-49 199.1 152 69.7
PGR004G0738 Punica granatum HOM05D001685 ORTHO05D007488 2.7e-49 198.7 152 68.4
Atru.chr4.2789 Acer truncatum HOM05D001685 ORTHO05D007488 3.5e-49 198.4 152 69.7
arahy.Tifrunner.gnm1.ann1.536D4K Arachis hypogaea HOM05D001685 ORTHO05D007488 4.6e-49 198.0 152 69.1
arahy.Tifrunner.gnm1.ann1.ADAJ08 Arachis hypogaea HOM05D001685 ORTHO05D007488 4.6e-49 198.0 152 69.1
Haze_01243 Corylus avellana HOM05D001685 ORTHO05D007488 6.0e-49 197.6 152 69.7
RcHm_v2.0_Chr4g0421541 Rosa chinensis HOM05D001685 ORTHO05D007488 1.0e-48 196.8 152 69.1
CSS0033523 Camellia sinensis var. sinensis HOM05D001685 ORTHO05D007488 1.3e-48 196.4 133 76.7
Cfa015363 Carpinus fangiana HOM05D001685 ORTHO05D007488 1.3e-48 196.4 152 69.1
Eucgr.H03869 Eucalyptus grandis HOM05D001685 ORTHO05D007488 1.8e-48 196.1 152 68.4
FvH4_4g17620 Fragaria vesca HOM05D001685 ORTHO05D007488 2.3e-48 195.7 152 68.4
FAN07G1165 Fragaria x ananassa HOM05D001685 ORTHO05D007488 2.3e-48 195.7 152 68.4
FAN12G0539 Fragaria x ananassa HOM05D001685 ORTHO05D007488 2.3e-48 195.7 152 68.4
FAN12G2140 Fragaria x ananassa HOM05D001685 ORTHO05D007488 2.3e-48 195.7 152 68.4
CANSAT78G0268 Cannabis sativa HOM05D001685 ORTHO05D007488 5.1e-48 194.5 152 67.1
Ciclev10004482m.g Citrus clementina HOM05D001685 ORTHO05D007488 5.1e-48 194.5 152 69.1
FAN17G0087 Fragaria x ananassa HOM05D001685 ORTHO05D007488 5.1e-48 194.5 152 67.8
CSS0050121 Camellia sinensis var. sinensis HOM05D001685 ORTHO05D007488 6.7e-48 194.1 132 75.8
Cc03_g02120 Coffea canephora HOM05D001685 ORTHO05D007488 6.7e-48 194.1 157 66.2
CSS0000799 Camellia sinensis var. sinensis HOM05D001685 ORTHO05D007488 1.1e-47 193.4 156 66.0
Glyma.13G216800 Glycine max HOM05D001685 ORTHO05D007488 1.1e-47 193.4 152 67.8
HanXRQChr03g0079811 Helianthus annuus HOM05D001685 ORTHO05D007488 1.1e-47 193.4 156 66.7
MD16G1172900 Malus domestica HOM05D001685 ORTHO05D007488 1.1e-47 193.4 152 67.8
Prupe.1G139700 Prunus persica HOM05D001685 ORTHO05D007488 1.1e-47 193.4 152 67.8
CDE01G0502 Ceratophyllum demersum HOM05D001685 ORTHO05D007488 1.5e-47 193.0 153 66.7
Manes.15G014800 Manihot esculenta HOM05D001685 ORTHO05D007488 1.5e-47 193.0 152 67.8
Sc13g0003540 Simmondsia chinensis HOM05D001685 ORTHO05D007488 1.5e-47 193.0 156 66.0
Actinidia01944 Actinidia chinensis HOM05D001685 ORTHO05D007488 1.9e-47 192.6 156 66.0
ATR0706G022 Amborella trichopoda HOM05D001685 ORTHO05D007488 1.9e-47 192.6 156 66.7
MSTRG.3936 Avicennia marina HOM05D001685 ORTHO05D007488 1.9e-47 192.6 151 66.2
vmacro08110 Vaccinium macrocarpon HOM05D001685 ORTHO05D007488 1.9e-47 192.6 160 64.4
CSS0001180 Camellia sinensis var. sinensis HOM05D001685 ORTHO05D007488 3.3e-47 191.8 156 65.4
CiPaw.01G151100 Carya illinoinensis HOM05D001685 ORTHO05D007488 4.3e-47 191.4 152 66.4
ECA240G2366 Erigeron canadensis HOM05D001685 ORTHO05D007488 4.3e-47 191.4 156 66.0
CSS0033849 Camellia sinensis var. sinensis HOM05D001685 ORTHO05D007488 7.4e-47 190.7 156 65.4
Gohir.A10G162200 Gossypium hirsutum HOM05D001685 ORTHO05D007488 7.4e-47 190.7 152 66.4
Gorai.011G188100 Gossypium raimondii HOM05D001685 ORTHO05D007488 7.4e-47 190.7 152 66.4
MBI19_g36823_MAGBIO Magnolia biondii HOM05D001685 ORTHO05D007488 7.4e-47 190.7 156 64.7
Nn3g21379 Nelumbo nucifera HOM05D001685 ORTHO05D007488 7.4e-47 190.7 156 65.4
Thecc.04G280200 Theobroma cacao HOM05D001685 ORTHO05D007488 7.4e-47 190.7 152 67.1
Solyc01g067530.3 Solanum lycopersicum HOM05D001685 ORTHO05D007488 9.6e-47 190.3 156 65.4
Sopen01g029480 Solanum pennellii HOM05D001685 ORTHO05D007488 9.6e-47 190.3 156 65.4
Dinv44406 Davidia involucrata HOM05D001685 ORTHO05D007488 1.3e-46 189.9 156 65.4
Os07g0669200 Oryza sativa ssp. japonica HOM05D001685 ORTHO05D007488 1.3e-46 189.9 152 65.8
CSS0000537 Camellia sinensis var. sinensis HOM05D001685 ORTHO05D007488 1.6e-46 189.5 156 65.4
TAR636G1751 Trochodendron aralioides HOM05D001685 ORTHO05D007488 1.6e-46 189.5 156 64.7
CAN.G580.1 Capsicum annuum HOM05D001685 ORTHO05D007488 2.1e-46 189.1 156 64.7
COL.COLO4_13905 Corchorus olitorius HOM05D001685 ORTHO05D007488 2.8e-46 188.7 152 65.8
Migut.G00277 Erythranthe guttata HOM05D001685 ORTHO05D007488 2.8e-46 188.7 151 64.2
Lsat_1_v5_gn_5_51241 Lactuca sativa HOM05D001685 ORTHO05D007488 3.7e-46 188.3 156 66.0
Phvul.006G163000 Phaseolus vulgaris HOM05D001685 ORTHO05D007488 3.7e-46 188.3 152 67.1
Ah.04g153910 Amaranthus hybridus HOM05D001685 ORTHO05D007488 4.8e-46 188.0 157 64.3
Ca_00557_v3 Cicer arietinum L. HOM05D001685 ORTHO05D007488 4.8e-46 188.0 152 65.8
TWI09G0695 Tripterygium wilfordii HOM05D001685 ORTHO05D007488 4.8e-46 188.0 152 65.1
Rhsim04G0218700 Rhododendron simsii HOM05D001685 ORTHO05D007488 6.2e-46 187.6 160 61.9
Aqoxy1G01559 Aquilegia oxysepala HOM05D001685 ORTHO05D007488 8.2e-46 187.2 156 64.7
CSS0034079 Camellia sinensis var. sinensis HOM05D001685 ORTHO05D007488 8.2e-46 187.2 156 64.7
SEGI_37784 Sequoiadendron giganteum HOM05D001685 ORTHO05D007488 1.1e-45 186.8 155 63.9
Lj6g0018727 Lotus japonicus HOM05D001685 ORTHO05D007488 1.4e-45 186.4 152 64.5
Prupe.1G145700 Prunus persica HOM05D001685 ORTHO05D007488 1.4e-45 186.4 152 65.8
Nitab4.5_0000644g0130 Nicotiana tabacum HOM05D001685 ORTHO05D007488 1.8e-45 186.0 156 64.7
SalBow2G3264 Salvia bowleyana HOM05D001685 ORTHO05D007488 1.8e-45 186.0 151 64.9
Hund17597 Selenicereus undatus HOM05D001685 ORTHO05D007488 1.8e-45 186.0 156 64.1
SGA_v2.0_scaffold86G26925 Striga asiatica HOM05D001685 ORTHO05D007488 2.4e-45 185.7 152 63.2
VMungo0540G1912 Vigna mungo HOM05D001685 ORTHO05D007488 3.1e-45 185.3 152 65.1
QL06p008035 Quercus lobata HOM05D001685 ORTHO05D007488 4.0e-45 184.9 153 64.7
TPR.G35520 Trifolium pratense HOM05D001685 ORTHO05D007488 4.0e-45 184.9 152 63.8
Medtr2g019790 Medicago truncatula HOM05D001685 ORTHO05D007488 6.9e-45 184.1 152 63.8
Nitab4.5_0000784g0140 Nicotiana tabacum HOM05D001685 ORTHO05D007488 6.9e-45 184.1 156 64.1
Zm00001eb111050 Zea mays HOM05D001685 ORTHO05D007488 6.9e-45 184.1 152 63.8
BcaC03g13609 Brassica carinata HOM05D001685 ORTHO05D007488 9.0e-45 183.7 138 71.0
Potri.010G022400 Populus trichocarpa HOM05D001685 ORTHO05D007488 1.5e-44 183.0 152 63.8
Oeu021113.2 Olea europaea HOM05D001685 ORTHO05D007488 2.6e-44 182.2 151 64.9
Sed0007220 Sechium edule HOM05D001685 ORTHO05D007488 5.8e-44 181.0 152 65.1
ClCG00G005760 Citrullus lanatus HOM05D001685 ORTHO05D007488 7.6e-44 180.6 153 64.7
ClCG05G005930 Citrullus lanatus HOM05D001685 ORTHO05D007488 1.0e-43 180.3 152 64.5
MELO3C006624.2 Cucumis melo HOM05D001685 ORTHO05D007488 1.0e-43 180.3 152 64.5
DCAR_024555 Daucus carota HOM05D001685 ORTHO05D007488 1.3e-43 179.9 156 61.5
Peaxi162Scf00386g00526 Petunia axillaris HOM05D001685 ORTHO05D007488 1.7e-43 179.5 156 62.2
Sabra10G0015900 Salix brachista HOM05D001685 ORTHO05D007488 1.7e-43 179.5 152 62.5
HPP92_001325 Vanilla planifolia HOM05D001685 ORTHO05D007488 2.5e-42 175.6 156 61.5
Psat1g189920 Pisum sativum HOM05D001685 ORTHO05D007488 2.1e-41 172.6 152 61.8
SMO169G0319 Selaginella moellendorffii HOM05D001685 ORTHO05D007488 6.7e-40 167.5 153 59.5
CsaV3_3G014310 Cucumis sativus L. HOM05D001685 ORTHO05D007488 1.1e-39 166.8 150 62.7
EL10Ac3g06577 Beta vulgaris HOM05D001685 ORTHO05D007488 2.2e-38 162.5 136 61.8
CSS0036229 Camellia sinensis var. sinensis HOM05D001685 ORTHO05D007488 2.8e-38 162.2 137 65.0
Mapoly0136s0003 Marchantia polymorpha HOM05D001685 ORTHO05D007488 6.3e-38 161.0 153 56.9
Pp3c7_19740 Physcomitrium patens HOM05D001685 ORTHO05D007488 1.4e-37 159.8 158 55.7
Glyma.15G095700 Glycine max HOM05D001685 ORTHO05D007488 6.9e-37 157.5 129 65.1
AagrBONN_evm.TU.Sc2ySwM_368.2660 Anthoceros agrestis HOM05D001685 ORTHO05D007488 9.0e-37 157.1 153 54.9
CBR_g24048 Chara braunii HOM05D001685 ORTHO05D007488 7.2e-34 147.5 158 53.8
Lj3C814G4 Lonicera japonica HOM05D001685 ORTHO05D007488 2.7e-33 145.6 131 64.9
MCO11G224 Micromonas commoda HOM05D001685 ORTHO05D007488 4.8e-30 134.8 152 51.3
FAN22G0503 Fragaria x ananassa HOM05D001685 ORTHO05D007488 1.1e-29 133.7 141 55.3
PRCOL_00003567 Prasinoderma coloniale HOM05D001685 ORTHO05D007488 5.3e-29 131.3 162 49.4
Cre10.g433100 Chlamydomonas reinhardtii HOM05D001685 ORTHO05D007488 3.4e-28 128.6 155 47.7
CSS0015415 Camellia sinensis var. sinensis HOM05D001685 ORTHO05D007488 5.9e-28 127.9 157 51.0
GSVIVG01017775001 Vitis vinifera HOM05D001685 ORTHO05D007488 2.0e-23 112.8 133 51.1
AUR62042645 Chenopodium quinoa HOM05D001685 ORTHO05D007488 1.4e-21 106.7 156 44.9
Cfa024527 Carpinus fangiana HOM05D001685 ORTHO05D122472 7.7e-12 74.3 92 40.2
Gohir.D10G168700 Gossypium hirsutum HOM05D001685 ORTHO05D007488 4.2e-10 68.6 76 55.3
Duzib150G0753 Durio zibethinus HOM05D001685 ORTHO05D006653 4.0e-08 62.0 95 35.8
CBR_g39640 Chara braunii HOM05D001685 ORTHO05D006653 5.2e-08 61.6 123 32.5
HanXRQChr05g0134921 Helianthus annuus HOM05D001685 ORTHO05D006653 1.5e-07 60.1 95 36.8
A08p35550 Brassica napus HOM05D001685 ORTHO05D006653 5.7e-07 58.2 98 34.7
BraA08t35461Z Brassica rapa HOM05D001685 ORTHO05D006653 5.7e-07 58.2 98 34.7
Migut.J01517 Erythranthe guttata HOM05D001685 ORTHO05D006653 7.5e-07 57.8 95 35.8
TWI79G0438 Tripterygium wilfordii HOM05D001685 ORTHO05D006653 7.5e-07 57.8 95 35.8
Os11g0704300 Oryza sativa ssp. japonica HOM05D001685 ORTHO05D006653 1.3e-06 57.0 92 34.8
BcaB03g13384 Brassica carinata HOM05D001685 ORTHO05D006653 1.7e-06 56.6 98 33.7
ECA236G2424 Erigeron canadensis HOM05D001685 ORTHO05D006653 1.7e-06 56.6 95 34.7
Oeu052796.1 Olea europaea HOM05D001685 ORTHO05D006653 1.7e-06 56.6 95 34.7
C08p03210 Brassica napus HOM05D001685 ORTHO05D006653 2.2e-06 56.2 98 33.7
BolC8t47119H Brassica oleracea HOM05D001685 ORTHO05D006653 2.2e-06 56.2 98 33.7
HPP92_014383 Vanilla planifolia HOM05D001685 ORTHO05D006653 2.2e-06 56.2 95 33.7
Haze_24093 Corylus avellana HOM05D001685 ORTHO05D006653 3.7e-06 55.5 95 34.7
arahy.Tifrunner.gnm1.ann1.B8I18B Arachis hypogaea HOM05D001685 ORTHO05D006653 4.8e-06 55.1 95 33.7
Atru.chr3.3899 Acer truncatum HOM05D001685 ORTHO05D006653 6.3e-06 54.7 95 34.7
Lsat_1_v5_gn_8_73061 Lactuca sativa HOM05D001685 ORTHO05D006653 6.3e-06 54.7 95 33.7
PGR083G0190 Punica granatum HOM05D001685 ORTHO05D006653 6.3e-06 54.7 95 33.7
arahy.Tifrunner.gnm1.ann1.KF4YKV Arachis hypogaea HOM05D001685 ORTHO05D006653 8.2e-06 54.3 95 33.7
arahy.Tifrunner.gnm1.ann1.ZC6F0H Arachis hypogaea HOM05D001685 ORTHO05D006653 8.2e-06 54.3 95 33.7
Cpa.g.sc81.154 Carica papaya HOM05D001685 ORTHO05D006653 8.2e-06 54.3 98 34.7


User provided reference genes

Program Settings