Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL9U10640 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 5.7e-110 401.0 211 100.0
AL6G41360 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 1.5e-81 306.6 196 85.2
AL7G45270 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 2.5e-81 305.8 188 87.2
AL4G20970 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 2.8e-80 302.4 196 84.7
AL8G38230 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 1.3e-64 250.4 158 85.4
BcaC04g23445 Brassica carinata HOM05D002866 ORTHO05D008706 8.1e-64 247.7 158 84.2
BraA03t13839Z Brassica rapa HOM05D002866 ORTHO05D008706 1.8e-63 246.5 158 82.9
A03p47120 Brassica napus HOM05D002866 ORTHO05D008929 4.0e-63 245.4 158 82.9
C07p45230 Brassica napus HOM05D002866 ORTHO05D008929 4.0e-63 245.4 158 82.9
C09p08260 Brassica napus HOM05D002866 ORTHO05D008706 4.0e-63 245.4 158 82.9
BolC9t53736H Brassica oleracea HOM05D002866 ORTHO05D008706 4.0e-63 245.4 158 82.9
Sp2g24730 Schrenkiella parvula HOM05D002866 ORTHO05D008706 5.3e-63 245.0 158 82.9
AT5G61530 Arabidopsis thaliana HOM05D002866 ORTHO05D008706 9.0e-63 244.2 158 82.3
A09p07320 Brassica napus HOM05D002866 ORTHO05D008706 2.0e-62 243.0 158 81.6
BraA09t36387Z Brassica rapa HOM05D002866 ORTHO05D008706 2.0e-62 243.0 158 81.6
Thhalv10005440m.g Eutrema salsugineum HOM05D002866 ORTHO05D008706 2.0e-62 243.0 158 81.6
BcaNung01432 Brassica carinata HOM05D002866 ORTHO05D008706 2.6e-62 242.7 158 81.6
BolC7t45046H Brassica oleracea HOM05D002866 ORTHO05D008929 2.9e-61 239.2 163 80.4
Carub.0008s2222 Capsella rubella HOM05D002866 ORTHO05D008706 8.4e-61 237.7 158 81.6
CARHR275300 Cardamine hirsuta HOM05D002866 ORTHO05D008706 4.6e-59 231.9 158 79.7
THA.LOC104819416 Tarenaya hassleriana HOM05D002866 ORTHO05D008706 3.1e-55 219.2 161 73.3
MD01G1178200 Malus domestica HOM05D002866 ORTHO05D008706 3.4e-54 215.7 158 70.9
Prupe.2G274000 Prunus persica HOM05D002866 ORTHO05D008706 4.5e-54 215.3 161 69.6
Aa31LG11G1890 Aethionema arabicum HOM05D002866 ORTHO05D008706 2.2e-53 213.0 179 68.2
Cpa.g.sc13.273 Carica papaya HOM05D002866 ORTHO05D008706 1.1e-52 210.7 161 67.7
MD07G1250400 Malus domestica HOM05D002866 ORTHO05D008706 4.2e-52 208.8 161 68.3
RcHm_v2.0_Chr1g0373901 Rosa chinensis HOM05D002866 ORTHO05D008706 4.2e-52 208.8 158 69.0
COL.COLO4_14065 Corchorus olitorius HOM05D002866 ORTHO05D008706 5.5e-52 208.4 158 69.0
Duzib205G1859 Durio zibethinus HOM05D002866 ORTHO05D008706 5.5e-52 208.4 158 69.0
Thecc.03G150500 Theobroma cacao HOM05D002866 ORTHO05D008706 7.1e-52 208.0 158 69.6
FAN10G3812 Fragaria x ananassa HOM05D002866 ORTHO05D008706 3.5e-51 205.7 166 63.3
ClCG07G016890 Citrullus lanatus HOM05D002866 ORTHO05D008706 4.6e-51 205.3 161 66.5
FvH4_7g27080 Fragaria vesca HOM05D002866 ORTHO05D008706 4.6e-51 205.3 158 65.8
FAN06G0035 Fragaria x ananassa HOM05D002866 ORTHO05D008706 4.6e-51 205.3 158 65.8
Gohir.D12G199800 Gossypium hirsutum HOM05D002866 ORTHO05D008706 4.6e-51 205.3 158 67.7
CANSAT56G0863 Cannabis sativa HOM05D002866 ORTHO05D008706 6.0e-51 204.9 158 67.1
Gohir.A12G197200 Gossypium hirsutum HOM05D002866 ORTHO05D008706 7.9e-51 204.5 158 67.1
FAN06G0893 Fragaria x ananassa HOM05D002866 ORTHO05D008706 1.3e-50 203.8 158 65.2
Haze_22176 Corylus avellana HOM05D002866 ORTHO05D008706 1.8e-50 203.4 161 64.0
QL09p028565 Quercus lobata HOM05D002866 ORTHO05D008706 1.8e-50 203.4 158 66.5
Cfa013555 Carpinus fangiana HOM05D002866 ORTHO05D008706 2.3e-50 203.0 161 64.6
CiPaw.08G040800 Carya illinoinensis HOM05D002866 ORTHO05D008706 2.3e-50 203.0 167 64.7
CiPaw.07G185900 Carya illinoinensis HOM05D002866 ORTHO05D008706 3.9e-50 202.2 158 66.5
Oeu021695.1 Olea europaea HOM05D002866 ORTHO05D008706 8.7e-50 201.1 167 62.9
Atru.chr1.857 Acer truncatum HOM05D002866 ORTHO05D008706 1.1e-49 200.7 158 67.1
MELO3C017654.2 Cucumis melo HOM05D002866 ORTHO05D008706 1.5e-49 200.3 161 64.6
Eucgr.K00134 Eucalyptus grandis HOM05D002866 ORTHO05D008706 2.5e-49 199.5 168 60.7
Lj3g0011743 Lotus japonicus HOM05D002866 ORTHO05D008706 2.5e-49 199.5 167 62.3
Ciclev10005197m.g Citrus clementina HOM05D002866 ORTHO05D008706 3.3e-49 199.1 167 61.7
Glyma.09G001400 Glycine max HOM05D002866 ORTHO05D008706 3.3e-49 199.1 167 61.7
Nitab4.5_0002346g0030 Nicotiana tabacum HOM05D002866 ORTHO05D008706 3.3e-49 199.1 161 64.0
Nitab4.5_0001267g0040 Nicotiana tabacum HOM05D002866 ORTHO05D008706 4.3e-49 198.7 161 64.0
CsaV3_4G004120 Cucumis sativus L. HOM05D002866 ORTHO05D008706 5.7e-49 198.4 161 64.0
Sed0026429 Sechium edule HOM05D002866 ORTHO05D008706 5.7e-49 198.4 161 64.0
PGR142G0955 Punica granatum HOM05D002866 ORTHO05D008706 9.6e-49 197.6 167 62.9
Solyc03g093430.3 Solanum lycopersicum HOM05D002866 ORTHO05D008706 2.1e-48 196.4 161 62.7
Sopen03g024260 Solanum pennellii HOM05D002866 ORTHO05D008706 2.1e-48 196.4 161 62.7
PGSC0003DMG400018852 Solanum tuberosum HOM05D002866 ORTHO05D008706 2.1e-48 196.4 161 62.7
Glyma.12G241300 Glycine max HOM05D002866 ORTHO05D008706 4.8e-48 195.3 167 61.1
vmacro22347 Vaccinium macrocarpon HOM05D002866 ORTHO05D008706 4.8e-48 195.3 158 63.9
Peaxi162Scf00271g00837 Petunia axillaris HOM05D002866 ORTHO05D008706 6.2e-48 194.9 158 63.3
Potri.004G233400 Populus trichocarpa HOM05D002866 ORTHO05D008706 6.2e-48 194.9 171 62.6
Ca_19791_v3 Cicer arietinum L. HOM05D002866 ORTHO05D008706 8.2e-48 194.5 167 59.9
HanXRQChr05g0139511 Helianthus annuus HOM05D002866 ORTHO05D008706 8.2e-48 194.5 161 61.5
TAR629G0107 Trochodendron aralioides HOM05D002866 ORTHO05D008706 8.2e-48 194.5 158 65.8
Rhsim03G0163000 Rhododendron simsii HOM05D002866 ORTHO05D008706 1.1e-47 194.1 158 63.3
VMungo1127G0600 Vigna mungo HOM05D002866 ORTHO05D008706 1.1e-47 194.1 167 59.9
TPR.G4977 Trifolium pratense HOM05D002866 ORTHO05D008706 1.8e-47 193.4 167 59.9
TWI39G0340 Tripterygium wilfordii HOM05D002866 ORTHO05D008706 2.4e-47 193.0 158 62.7
Psat7g229240 Pisum sativum HOM05D002866 ORTHO05D008706 3.1e-47 192.6 167 60.5
Actinidia13600 Actinidia chinensis HOM05D000164 ORTHO05D000096 4.1e-47 192.2 161 62.7
Cc02_g04580 Coffea canephora HOM05D002866 ORTHO05D008706 4.1e-47 192.2 161 61.5
Manes.06G132500 Manihot esculenta HOM05D002866 ORTHO05D008706 5.3e-47 191.8 158 62.7
MSTRG.135 Avicennia marina HOM05D002866 ORTHO05D008706 6.9e-47 191.4 158 62.7
Lsat_1_v5_gn_8_9940 Lactuca sativa HOM05D002866 ORTHO05D008706 6.9e-47 191.4 171 59.1
CSS0019630 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008706 9.0e-47 191.0 161 61.5
CSS0049284 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008706 1.2e-46 190.7 161 61.5
Medtr4g029530 Medicago truncatula HOM05D002866 ORTHO05D008706 1.2e-46 190.7 158 61.4
Gorai.008G215000 Gossypium raimondii HOM05D002866 ORTHO05D008706 1.5e-46 190.3 186 57.5
CAN.G485.11 Capsicum annuum HOM05D002866 ORTHO05D008706 4.5e-46 188.7 162 61.1
Migut.F00510 Erythranthe guttata HOM05D002866 ORTHO05D008706 5.8e-46 188.3 158 61.4
TAR636G1476 Trochodendron aralioides HOM05D002866 ORTHO05D008706 1.0e-45 187.6 158 62.0
MBI04_g34101_MAGBIO Magnolia biondii HOM05D002866 ORTHO05D008706 1.7e-45 186.8 157 61.1
Sabra01G0178500 Salix brachista HOM05D002866 ORTHO05D008706 1.7e-45 186.8 158 63.3
Dinv16857 Davidia involucrata HOM05D002866 ORTHO05D000096 2.2e-45 186.4 162 62.3
Aqoxy3G02809 Aquilegia oxysepala HOM05D002866 ORTHO05D008706 5.0e-45 185.3 158 58.9
Eucgr.A02912 Eucalyptus grandis HOM05D002866 ORTHO05D008706 5.0e-45 185.3 167 58.1
Dinv06581 Davidia involucrata HOM05D002866 ORTHO05D008706 6.5e-45 184.9 165 62.4
Lalb_Chr03g0033851 Lupinus albus HOM05D002866 ORTHO05D008706 8.4e-45 184.5 167 56.9
Lalb_Chr01g0008171 Lupinus albus HOM05D002866 ORTHO05D008706 5.5e-44 181.8 161 57.8
Nn6g33864 Nelumbo nucifera HOM05D002866 ORTHO05D008706 5.5e-44 181.8 159 59.1
Lj1A977T67 Lonicera japonica HOM05D002866 ORTHO05D008706 7.1e-44 181.4 187 54.0
unitig_0.g267 Utricularia gibba HOM05D002866 ORTHO05D008706 2.1e-43 179.9 167 55.1
arahy.Tifrunner.gnm1.ann1.J95VX3 Arachis hypogaea HOM05D002866 ORTHO05D008706 3.5e-43 179.1 190 52.6
Os07g0486500 Oryza sativa ssp. japonica HOM05D002866 ORTHO05D008706 4.6e-43 178.7 160 55.0
CDE02G3129 Ceratophyllum demersum HOM05D002866 ORTHO05D008706 6.1e-43 178.3 149 60.4
Ah.07g207580 Amaranthus hybridus HOM05D002866 ORTHO05D008706 7.9e-43 177.9 161 57.1
arahy.Tifrunner.gnm1.ann1.E5894Z Arachis hypogaea HOM05D002866 ORTHO05D008706 7.9e-43 177.9 196 51.0
PSO063G2361 Papaver somniferum HOM05D002866 ORTHO05D008706 7.9e-43 177.9 159 56.0
EL10Ac3g05867 Beta vulgaris HOM05D002866 ORTHO05D008706 3.0e-42 176.0 161 57.1
FAN01G3021 Fragaria x ananassa HOM05D002866 ORTHO05D008706 8.7e-42 174.5 179 54.2
SGA_v2.0_scaffold60G20804 Striga asiatica HOM05D006112 ORTHO05D000096 8.7e-42 174.5 184 52.2
Zm00001eb105130 Zea mays HOM05D002866 ORTHO05D008706 7.4e-41 171.4 143 58.7
ATR0057G110 Amborella trichopoda HOM05D002866 ORTHO05D008706 1.8e-39 166.8 176 51.1
FAN03G0071 Fragaria x ananassa HOM05D002866 ORTHO05D008706 9.0e-39 164.5 145 60.0
HPP92_007440 Vanilla planifolia HOM05D002866 ORTHO05D008706 1.0e-34 151.0 150 52.0
Hund27168 Selenicereus undatus HOM05D002866 ORTHO05D008706 4.3e-33 145.6 241 39.4
GSVIVG01032279001 Vitis vinifera HOM05D002866 ORTHO05D008706 1.0e-29 134.4 128 57.8
Zm00001eb321610 Zea mays HOM05D002866 ORTHO05D008706 6.1e-27 125.2 151 47.0
AUR62015444 Chenopodium quinoa HOM05D002866 ORTHO05D008706 1.0e-26 124.4 167 46.7
AagrBONN_evm.TU.Sc2ySwM_368.2292 Anthoceros agrestis HOM05D002866 ORTHO05D008706 5.7e-25 118.6 145 44.1
AUR62002232 Chenopodium quinoa HOM05D002866 ORTHO05D008706 2.8e-24 116.3 167 43.1
SEGI_37372 Sequoiadendron giganteum HOM05D002866 ORTHO05D008706 3.1e-23 112.8 88 58.0
CBR_g12377 Chara braunii HOM05D002866 ORTHO05D008706 1.2e-22 110.9 168 39.3
Mapoly0101s0019 Marchantia polymorpha HOM05D002866 ORTHO05D008706 8.5e-21 104.8 174 36.2
GSVIVG01005702001 Vitis vinifera HOM05D002866 ORTHO05D008706 2.4e-15 86.7 63 65.1
GSVIVG01032275001 Vitis vinifera HOM05D002866 ORTHO05D008706 1.6e-14 84.0 62 62.9
GSVIVG01032273001 Vitis vinifera HOM05D002866 ORTHO05D008706 2.0e-06 57.0 46 58.7


User provided reference genes

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