Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL9U10560 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 9.7e-83 310.1 153 100.0
AT4G13261 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.6e-72 275.4 149 89.3
AT4G13263 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.6e-72 275.4 149 89.9
AT5G35405 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.4e-72 275.0 149 89.3
AT3G11990 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 9.1e-57 223.8 171 66.7
AT1G47470 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 5.9e-56 221.1 172 68.0
AT1G45190 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.7e-55 219.5 171 66.7
AL3G23600 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 5.5e-54 214.5 169 68.0
AL1G53940 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 6.8e-52 207.6 152 66.4
Carub.0008s0480 Capsella rubella HOM05D007923 ORTHO05D009651 7.5e-51 204.1 172 61.6
Sp3g10220 Schrenkiella parvula HOM05D007923 ORTHO05D009651 4.5e-48 194.9 177 62.1
AL5G13880 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.9e-46 189.5 158 60.8
AL5G13890 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.9e-46 189.5 158 60.8
AT2G04031 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 7.2e-46 187.6 152 63.2
CARHR086550 Cardamine hirsuta HOM05D007923 ORTHO05D009651 1.6e-45 186.4 173 57.8
AL5G13870 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 8.0e-45 184.1 158 59.5
AT2G04041 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 4.4e-43 178.3 152 60.5
AT2G04037 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.7e-42 175.3 158 59.5
AL5G13910 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 7.0e-41 171.0 141 58.9
Carub.0006s2829 Capsella rubella HOM05D007923 ORTHO05D009651 7.7e-40 167.5 167 58.7
AL5G13900 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.3e-39 166.8 215 45.6
A05p37330 Brassica napus HOM05D007923 ORTHO05D009651 1.9e-38 162.9 178 52.2
BraA05t22530Z Brassica rapa HOM05D007923 ORTHO05D009651 1.9e-38 162.9 178 52.2
Thhalv10022160m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 3.3e-38 162.2 174 54.6
BcaC05g29300 Brassica carinata HOM05D007923 ORTHO05D009651 6.1e-37 157.9 178 50.6
C05p55840 Brassica napus HOM05D007923 ORTHO05D009651 6.1e-37 157.9 178 50.6
BolC5t34253H Brassica oleracea HOM05D007923 ORTHO05D009651 6.1e-37 157.9 178 50.6
AT1G47450 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.5e-35 153.3 175 53.1
BcaC05g29301 Brassica carinata HOM05D007923 ORTHO05D009651 2.9e-34 149.1 178 48.9
C05p55860 Brassica napus HOM05D007923 ORTHO05D009651 2.9e-34 149.1 178 48.9
BolC5t34255H Brassica oleracea HOM05D007923 ORTHO05D009651 2.9e-34 149.1 178 48.9
CARHR179580 Cardamine hirsuta HOM05D007923 ORTHO05D009651 2.9e-34 149.1 164 46.3
BcaC09g48206 Brassica carinata HOM05D007923 ORTHO05D009651 1.4e-33 146.7 176 52.3
BcaB06g25567 Brassica carinata HOM05D007923 ORTHO05D009651 4.6e-32 141.7 163 50.3
BcaB06g25556 Brassica carinata HOM05D007923 ORTHO05D009651 8.6e-31 137.5 166 50.0
BcaC05g29302 Brassica carinata HOM05D007923 ORTHO05D009651 1.5e-30 136.7 161 49.1
C05p55870 Brassica napus HOM05D007923 ORTHO05D009651 1.5e-30 136.7 161 49.1
BolC5t34256H Brassica oleracea HOM05D007923 ORTHO05D009651 1.5e-30 136.7 161 49.1
BraA05t22535Z Brassica rapa HOM05D007923 ORTHO05D009651 1.5e-30 136.7 161 49.1
BcaB04g20407 Brassica carinata HOM05D007923 ORTHO05D009651 3.3e-30 135.6 151 49.0
THA.LOC104799715 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 3.3e-30 135.6 164 45.7
A05p37360 Brassica napus HOM05D007923 ORTHO05D009651 5.6e-30 134.8 160 48.8
BraA05t22533Z Brassica rapa HOM05D007923 ORTHO05D009651 2.1e-29 132.9 161 48.4
BcaC05g29304 Brassica carinata HOM05D007923 ORTHO05D009651 2.3e-28 129.4 161 47.2
A05p37350 Brassica napus HOM05D007923 ORTHO05D009651 2.3e-28 129.4 161 47.2
C05p55880 Brassica napus HOM05D007923 ORTHO05D009651 2.3e-28 129.4 161 47.2
BolC5t34257H Brassica oleracea HOM05D007923 ORTHO05D009651 2.3e-28 129.4 161 47.2
BraA05t22532Z Brassica rapa HOM05D007923 ORTHO05D009651 2.3e-28 129.4 161 47.2
BraA05t22534Z Brassica rapa HOM05D007923 ORTHO05D009651 4.0e-28 128.6 161 47.8
A05p37340 Brassica napus HOM05D007923 ORTHO05D009651 1.2e-27 127.1 161 46.6
BolC1t05274H Brassica oleracea HOM05D007923 ORTHO05D009651 1.2e-27 127.1 160 51.2
BraA05t22531Z Brassica rapa HOM05D007923 ORTHO05D009651 1.2e-27 127.1 161 46.6
C05p55890 Brassica napus HOM05D007923 ORTHO05D009651 2.0e-27 126.3 161 47.2
BolC5t34258H Brassica oleracea HOM05D007923 ORTHO05D009651 2.0e-27 126.3 161 47.2
BraA01t04147Z Brassica rapa HOM05D007923 ORTHO05D009651 4.4e-27 125.2 160 50.6
Carub.0001s4211 Capsella rubella HOM05D007923 ORTHO05D009651 5.4e-25 118.2 142 42.3
THA.LOC104810160 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.2e-24 117.1 149 42.3
CARHR043170 Cardamine hirsuta HOM05D007923 ORTHO05D009651 2.0e-24 116.3 155 41.9
BcaC05g29305 Brassica carinata HOM05D007923 ORTHO05D009651 7.8e-24 114.4 147 44.9
AL1G61300 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.3e-23 113.6 153 41.2
Thhalv10012072m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 8.6e-23 110.9 154 40.9
AT1G52970 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.5e-22 109.4 153 39.9
CARHR103140 Cardamine hirsuta HOM05D007923 ORTHO05D009651 7.3e-22 107.8 145 41.4
Sp1g39520 Schrenkiella parvula HOM05D007923 ORTHO05D009651 7.3e-22 107.8 152 38.2
BcaC09g48207 Brassica carinata HOM05D007923 ORTHO05D009651 5.2e-20 101.7 133 42.9
THA.LOC104824530 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 6.8e-20 101.3 157 36.9
BcaC08g44686 Brassica carinata HOM05D007923 ORTHO05D009651 7.5e-19 97.8 82 57.3
THA.LOC104803521 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.1e-17 94.0 124 40.3
COL.COLO4_10003 Corchorus olitorius HOM05D007923 ORTHO05D009651 4.6e-16 88.6 157 35.7
C06p22200 Brassica napus HOM05D007923 ORTHO05D009651 6.6e-15 84.7 144 41.7
BolC6t37406H Brassica oleracea HOM05D007923 ORTHO05D009651 7.3e-14 81.3 137 38.7
Cpa.g.sc4.156 Carica papaya HOM05D007923 ORTHO05D009651 3.1e-12 75.9 146 34.2
C05p55900 Brassica napus HOM05D007923 ORTHO05D009651 5.2e-12 75.1 53 60.4
Eucgr.C00225 Eucalyptus grandis HOM05D008402 ORTHO05D009651 3.4e-11 72.4 93 35.5
QL02p094689 Quercus lobata HOM05D008402 ORTHO05D009651 3.4e-11 72.4 143 33.6
Medtr1g054825 Medicago truncatula HOM05D008402 ORTHO05D000988 9.9e-11 70.9 152 33.6
Eucgr.C00224 Eucalyptus grandis HOM05D007923 ORTHO05D009651 1.3e-10 70.5 76 40.8
Cpa.g.sc127.52 Carica papaya HOM05D014073 ORTHO05D014166 1.7e-10 70.1 93 36.6
Carub.0006s2294 Capsella rubella HOM05D007888 ORTHO05D009976 2.9e-10 69.3 140 29.3
Eucgr.C00226 Eucalyptus grandis HOM05D042140 ORTHO05D009651 4.9e-10 68.6 78 37.2
Thecc.05G151700 Theobroma cacao HOM05D001614 ORTHO05D000988 8.4e-10 67.8 149 28.9
THA.LOC104813239 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.4e-09 67.0 146 35.6
AT2G21655 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 1.9e-09 66.6 147 28.6
THA.LOC104817628 Tarenaya hassleriana HOM05D007923 ORTHO05D009976 2.4e-09 66.2 147 34.0
Thecc.09G158400 Theobroma cacao HOM05D002073 ORTHO05D001803 2.4e-09 66.2 98 34.7
Thhalv10000516m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 3.2e-09 65.9 149 31.5
AL4G10980 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 4.1e-09 65.5 148 28.4
Sp4g04720 Schrenkiella parvula HOM05D007888 ORTHO05D009976 5.4e-09 65.1 150 30.7
AL4G10990 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 1.2e-08 63.9 148 29.1
COL.COLO4_13737 Corchorus olitorius HOM05D001614 ORTHO05D000988 1.6e-08 63.5 78 37.2
Phvul.001G071800 Phaseolus vulgaris HOM05D008402 ORTHO05D000988 2.7e-08 62.8 78 34.6
Sp2g20590 Schrenkiella parvula HOM05D007888 ORTHO05D009976 2.7e-08 62.8 153 31.4
TPR.G36159 Trifolium pratense HOM05D010700 ORTHO05D012225 2.7e-08 62.8 80 33.8
Lj1g0018215 Lotus japonicus HOM05D008402 ORTHO05D000988 3.5e-08 62.4 111 37.8
RcHm_v2.0_Chr2g0133141 Rosa chinensis HOM05D012941 ORTHO05D009651 3.5e-08 62.4 136 34.6
Sp4g04740 Schrenkiella parvula HOM05D007888 ORTHO05D009976 4.6e-08 62.0 156 28.8
Rhsim03G0156800 Rhododendron simsii HOM05D008521 ORTHO05D009651 1.3e-07 60.5 91 34.1
C01p52860 Brassica napus HOM05D007888 ORTHO05D009976 1.7e-07 60.1 149 30.2
BolC1t05221H Brassica oleracea HOM05D007888 ORTHO05D009976 1.7e-07 60.1 149 30.2
C01p52810 Brassica napus HOM05D007888 ORTHO05D009976 2.3e-07 59.7 149 30.2
C01p52840 Brassica napus HOM05D007888 ORTHO05D009976 2.3e-07 59.7 149 30.2
BolC1t05218H Brassica oleracea HOM05D007888 ORTHO05D009976 2.3e-07 59.7 149 30.9
Glyma.06G245400 Glycine max HOM05D010700 ORTHO05D012225 2.3e-07 59.7 79 30.4
C01p52800 Brassica napus HOM05D007888 ORTHO05D009976 3.0e-07 59.3 149 30.9
C01p53020 Brassica napus HOM05D007888 ORTHO05D009976 3.0e-07 59.3 159 27.7
BcaC09g48240 Brassica carinata HOM05D007888 ORTHO05D009976 3.9e-07 58.9 149 30.9
Psat4g125080 Pisum sativum HOM05D010700 ORTHO05D012225 3.9e-07 58.9 76 34.2
COL.COLO4_33207 Corchorus olitorius HOM05D001614 ORTHO05D000988 5.1e-07 58.5 131 31.3
BcaC01g00727 Brassica carinata HOM05D007888 ORTHO05D009976 6.6e-07 58.2 150 29.3
BcaC09g48239 Brassica carinata HOM05D007888 ORTHO05D009976 6.6e-07 58.2 149 30.2
Thecc.10G125700 Theobroma cacao HOM05D002073 ORTHO05D001803 6.6e-07 58.2 72 34.7
Glyma.06G245700 Glycine max HOM05D010700 ORTHO05D012225 1.1e-06 57.4 77 31.2
BolC1t05220H Brassica oleracea HOM05D007888 ORTHO05D009976 1.5e-06 57.0 149 29.5
Carub.0004s0518 Capsella rubella HOM05D007888 ORTHO05D009976 1.5e-06 57.0 86 29.1
Gohir.D05G328910 Gossypium hirsutum HOM05D002073 ORTHO05D001803 1.5e-06 57.0 79 32.9
AT2G21727 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 1.9e-06 56.6 145 29.0
AT3G29797 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 1.9e-06 56.6 90 28.9
Thecc.09G152800 Theobroma cacao HOM05D002073 ORTHO05D001803 1.9e-06 56.6 83 30.1
AL3G11060 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 2.5e-06 56.2 143 29.4
C01p52820 Brassica napus HOM05D007888 ORTHO05D009976 2.5e-06 56.2 149 30.2
BolC1t05219H Brassica oleracea HOM05D007888 ORTHO05D009976 2.5e-06 56.2 149 30.2
Glyma.06G245800 Glycine max HOM05D010700 ORTHO05D012225 2.5e-06 56.2 79 29.1
Medtr2g438130 Medicago truncatula HOM05D010700 ORTHO05D012225 2.5e-06 56.2 77 29.9
AT3G30247 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 3.3e-06 55.8 150 26.7
Medtr5g097880 Medicago truncatula HOM05D010700 ORTHO05D012225 3.3e-06 55.8 76 31.6
Eucgr.B01478 Eucalyptus grandis HOM05D013157 ORTHO05D017001 4.3e-06 55.5 78 37.2
Thhalv10005636m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 4.3e-06 55.5 107 29.9
BolC1t05223H Brassica oleracea HOM05D007888 ORTHO05D009976 5.6e-06 55.1 149 28.9
Lalb_Chr08g0236561 Lupinus albus HOM05D008402 ORTHO05D000988 5.6e-06 55.1 109 28.4
BcaC09g48237 Brassica carinata HOM05D007888 ORTHO05D009976 7.3e-06 54.7 149 28.2
Carub.0004s0516 Capsella rubella HOM05D007888 ORTHO05D009976 7.3e-06 54.7 87 29.9
Gohir.D05G328710 Gossypium hirsutum HOM05D002073 ORTHO05D001803 7.3e-06 54.7 78 32.1
Thecc.10G125800 Theobroma cacao HOM05D002073 ORTHO05D001803 7.3e-06 54.7 83 30.1
C01p52850 Brassica napus HOM05D007888 ORTHO05D009976 9.6e-06 54.3 149 28.9
Gohir.D05G326600 Gossypium hirsutum HOM05D002073 ORTHO05D001803 9.6e-06 54.3 78 30.8
Nitab4.5_0001427g0010 Nicotiana tabacum HOM05D022492 ORTHO05D025233 9.6e-06 54.3 120 29.2


User provided reference genes

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