Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL9U10260 Arabidopsis lyrata HOM05D008584 ORTHO05D010813 1.7e-23 111.7 52 100.0
AT4G13395 Arabidopsis thaliana HOM05D008584 ORTHO05D010813 5.5e-22 106.7 52 96.2
A08p06820 Brassica napus HOM05D008584 ORTHO05D010813 3.0e-20 100.9 52 94.2
BraA08t32700Z Brassica rapa HOM05D008584 ORTHO05D010813 3.0e-20 100.9 52 94.2
Carub.0007s2917 Capsella rubella HOM05D008584 ORTHO05D010813 1.4e-17 92.0 53 86.8
CARHR218960 Cardamine hirsuta HOM05D008584 ORTHO05D010813 2.4e-17 91.3 52 86.5
C08p08150 Brassica napus HOM05D008584 ORTHO05D010813 3.1e-17 90.9 44 93.2
BolC8t47667H Brassica oleracea HOM05D008584 ORTHO05D010813 3.1e-17 90.9 44 93.2
Gohir.A05G021200 Gossypium hirsutum HOM05D008584 ORTHO05D010813 5.0e-15 83.6 51 76.5
Gohir.D05G022600 Gossypium hirsutum HOM05D008584 ORTHO05D010813 5.0e-15 83.6 51 76.5
Duzib168G0012 Durio zibethinus HOM05D008584 ORTHO05D010813 2.5e-14 81.3 51 74.5
Thecc.09G114800 Theobroma cacao HOM05D008584 ORTHO05D010813 1.2e-13 79.0 51 72.5
MD02G1062300 Malus domestica HOM05D008584 ORTHO05D010813 2.3e-12 74.7 44 77.3
CANSAT56G1052 Cannabis sativa HOM05D008584 ORTHO05D010813 4.0e-12 73.9 44 77.3
CiPaw.04G167100 Carya illinoinensis HOM05D008584 ORTHO05D010813 4.0e-12 73.9 58 63.8
RcHm_v2.0_Chr2g0091061 Rosa chinensis HOM05D008584 ORTHO05D010813 2.0e-11 71.6 51 68.6
Prupe.7G227100 Prunus persica HOM05D008584 ORTHO05D010813 3.4e-11 70.9 61 57.4
Cc06_g09330 Coffea canephora HOM05D008584 ORTHO05D010813 4.4e-11 70.5 44 65.9
FAN28G0880 Fragaria x ananassa HOM05D008584 ORTHO05D010813 5.7e-11 70.1 44 70.5
CsaV3_2G002450 Cucumis sativus L. HOM05D008584 ORTHO05D010813 1.3e-10 68.9 47 66.0
Phvul.011G012500 Phaseolus vulgaris HOM05D008584 ORTHO05D010813 1.3e-10 68.9 45 64.4
Potri.018G072101 Populus trichocarpa HOM05D008584 ORTHO05D010813 1.3e-10 68.9 52 63.5
ClCG11G002630 Citrullus lanatus HOM05D008584 ORTHO05D010813 1.7e-10 68.6 41 75.6
Manes.03G068582 Manihot esculenta HOM05D008584 ORTHO05D010813 1.1e-09 65.9 44 65.9
Gohir.D07G004000 Gossypium hirsutum HOM05D008584 ORTHO05D010813 1.8e-09 65.1 42 73.8
Manes.03G068566 Manihot esculenta HOM05D008584 ORTHO05D010813 3.1e-09 64.3 44 63.6
Os05g0179100 Oryza sativa ssp. japonica HOM05D008584 ORTHO05D010813 7.0e-09 63.2 34 79.4
CAN.G1710.8 Capsicum annuum HOM05D008584 ORTHO05D010813 9.1e-09 62.8 44 63.6
HPP92_005548 Vanilla planifolia HOM05D008584 ORTHO05D010813 9.1e-09 62.8 38 71.1
CSS0042146 Camellia sinensis var. sinensis HOM05D008584 ORTHO05D010813 1.6e-08 62.0 44 61.4
Nn2g11826 Nelumbo nucifera HOM05D008584 ORTHO05D010813 2.0e-08 61.6 44 59.1
Zm00001eb282970 Zea mays HOM05D008584 ORTHO05D010813 2.7e-08 61.2 34 76.5
Gohir.A13G196900 Gossypium hirsutum HOM05D008584 ORTHO05D010813 3.5e-08 60.8 39 66.7
Gohir.D13G202200 Gossypium hirsutum HOM05D008584 ORTHO05D010813 3.5e-08 60.8 39 66.7
Gorai.013G231100 Gossypium raimondii HOM05D008584 ORTHO05D010813 3.5e-08 60.8 39 66.7
Nn2g15804 Nelumbo nucifera HOM05D008584 ORTHO05D010813 3.5e-08 60.8 36 69.4
Nn2g15810 Nelumbo nucifera HOM05D008584 ORTHO05D010813 3.5e-08 60.8 36 69.4
CsaV3_1G030850 Cucumis sativus L. HOM05D008584 ORTHO05D010813 4.5e-08 60.5 51 49.0
Sed0002148 Sechium edule HOM05D008584 ORTHO05D010813 7.7e-08 59.7 46 56.5
HPP92_000677 Vanilla planifolia HOM05D008584 ORTHO05D010813 7.7e-08 59.7 42 61.9
MD07G1201200 Malus domestica HOM05D001415 ORTHO05D001075 1.0e-07 59.3 43 53.5
Nn8g39267 Nelumbo nucifera HOM05D008584 ORTHO05D010813 2.2e-07 58.2 44 56.8
Sed0008951 Sechium edule HOM05D001415 ORTHO05D001075 2.9e-07 57.8 41 53.7
Atru.chr12.418 Acer truncatum HOM05D001415 ORTHO05D001075 3.8e-07 57.4 50 48.0
Lsat_1_v5_gn_5_100260 Lactuca sativa HOM05D008584 ORTHO05D010813 3.8e-07 57.4 36 72.2
vmacro22125 Vaccinium macrocarpon HOM05D008584 ORTHO05D010813 3.8e-07 57.4 51 52.9
Aa31LG5G22210 Aethionema arabicum HOM05D001415 ORTHO05D001075 5.0e-07 57.0 33 66.7
CANSAT56G2970 Cannabis sativa HOM05D001415 ORTHO05D001075 6.5e-07 56.6 32 68.8
CiPaw.01G289500 Carya illinoinensis HOM05D001415 ORTHO05D001075 6.5e-07 56.6 49 46.9
ClCG09G019600 Citrullus lanatus HOM05D001415 ORTHO05D001075 6.5e-07 56.6 49 46.9
MELO3C021616.2 Cucumis melo HOM05D001415 ORTHO05D001075 6.5e-07 56.6 49 46.9
CsaV3_5G026780 Cucumis sativus L. HOM05D001415 ORTHO05D001075 6.5e-07 56.6 49 46.9
FAN10G0897 Fragaria x ananassa HOM05D001415 ORTHO05D001075 6.5e-07 56.6 39 56.4
HanXRQChr09g0250171 Helianthus annuus HOM05D001415 ORTHO05D001075 6.5e-07 56.6 50 50.0
MD01G1103800 Malus domestica HOM05D001415 ORTHO05D001075 8.5e-07 56.2 36 63.9
MD07G1170600 Malus domestica HOM05D001415 ORTHO05D001075 8.5e-07 56.2 35 62.9
Prupe.2G209600 Prunus persica HOM05D001415 ORTHO05D001075 8.5e-07 56.2 32 68.8
Sed0003934 Sechium edule HOM05D001415 ORTHO05D001075 8.5e-07 56.2 49 46.9
Glyma.13G143700 Glycine max HOM05D001415 ORTHO05D001075 1.1e-06 55.8 33 63.6
Manes.07G117800 Manihot esculenta HOM05D001415 ORTHO05D001075 1.1e-06 55.8 49 46.9
Potri.008G035900 Populus trichocarpa HOM05D001415 ORTHO05D001075 1.1e-06 55.8 33 66.7
Cfa001452 Carpinus fangiana HOM05D001415 ORTHO05D001075 1.5e-06 55.5 47 46.8
FAN14G2263 Fragaria x ananassa HOM05D001415 ORTHO05D001075 1.5e-06 55.5 35 57.1
Glyma.10G057200 Glycine max HOM05D001415 ORTHO05D001075 1.5e-06 55.5 33 63.6
Manes.10G028700 Manihot esculenta HOM05D001415 ORTHO05D001075 1.5e-06 55.5 49 44.9
Sed0019804 Sechium edule HOM05D001415 ORTHO05D001075 1.5e-06 55.5 37 56.8
Lsat_1_v5_gn_9_64901 Lactuca sativa HOM05D001415 ORTHO05D001075 1.9e-06 55.1 49 49.0
MD01G1136300 Malus domestica HOM05D001415 ORTHO05D001075 1.9e-06 55.1 40 50.0
MD04G1094700 Malus domestica HOM05D001415 ORTHO05D001075 1.9e-06 55.1 39 56.4
Phvul.008G191701 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 1.9e-06 55.1 49 44.9
RcHm_v2.0_Chr1g0367921 Rosa chinensis HOM05D001415 ORTHO05D001075 1.9e-06 55.1 39 53.8
AagrBONN_evm.TU.Sc2ySwM_368.1140 Anthoceros agrestis HOM05D008584 ORTHO05D010813 2.5e-06 54.7 32 62.5
FAN03G1064 Fragaria x ananassa HOM05D001415 ORTHO05D001075 2.5e-06 54.7 39 56.4
VMungo0720G3116 Vigna mungo HOM05D001415 ORTHO05D001075 2.5e-06 54.7 33 60.6
CiPaw.01G269600 Carya illinoinensis HOM05D001415 ORTHO05D001075 3.2e-06 54.3 32 62.5
CiPaw.02G185400 Carya illinoinensis HOM05D001415 ORTHO05D001075 3.2e-06 54.3 49 44.9
MELO3C023874.2 Cucumis melo HOM05D001415 ORTHO05D001075 3.2e-06 54.3 49 44.9
Potri.010G226250 Populus trichocarpa HOM05D001415 ORTHO05D001075 3.2e-06 54.3 33 63.6
RcHm_v2.0_Chr3g0470051 Rosa chinensis HOM05D001415 ORTHO05D001075 3.2e-06 54.3 34 58.8
ClCG07G003480 Citrullus lanatus HOM05D001415 ORTHO05D001075 4.2e-06 53.9 49 44.9
FAN05G3971 Fragaria x ananassa HOM05D001415 ORTHO05D001075 4.2e-06 53.9 32 62.5
Phvul.001G233300 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 4.2e-06 53.9 39 53.8
TWI31G0218 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 4.2e-06 53.9 50 48.0
HPP92_012600 Vanilla planifolia HOM05D001415 ORTHO05D001075 4.2e-06 53.9 34 61.8
Actinidia02936 Actinidia chinensis HOM05D001415 ORTHO05D001075 5.5e-06 53.5 49 44.9
Ah.08g211680 Amaranthus hybridus HOM05D001415 ORTHO05D001075 5.5e-06 53.5 35 62.9
CiPaw.14G067100 Carya illinoinensis HOM05D001415 ORTHO05D001075 5.5e-06 53.5 37 54.1
Ca_05883_v3 Cicer arietinum L. HOM05D001415 ORTHO05D001075 5.5e-06 53.5 39 53.8
Haze_17089 Corylus avellana HOM05D001415 ORTHO05D001075 5.5e-06 53.5 47 44.7
Gohir.A05G348600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 5.5e-06 53.5 46 47.8
Gohir.D04G063900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 5.5e-06 53.5 46 47.8
Gorai.012G071500 Gossypium raimondii HOM05D001415 ORTHO05D001075 5.5e-06 53.5 46 47.8
LjContig00141g0017499 Lotus japonicus HOM05D001415 ORTHO05D001075 5.5e-06 53.5 43 48.8
Lalb_Chr17g0346301 Lupinus albus HOM05D001415 ORTHO05D001075 5.5e-06 53.5 39 53.8
Medtr5g080260 Medicago truncatula HOM05D001415 ORTHO05D001075 5.5e-06 53.5 39 53.8
Prupe.2G237800 Prunus persica HOM05D001415 ORTHO05D001075 5.5e-06 53.5 43 48.8
THA.LOC109116388 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 5.5e-06 53.5 38 55.3
TPR.G3500 Trifolium pratense HOM05D001415 ORTHO05D001075 5.5e-06 53.5 39 53.8
AL4G33230 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 7.2e-06 53.1 34 52.9
CANSAT56G0089 Cannabis sativa HOM05D001415 ORTHO05D001075 7.2e-06 53.1 40 52.5
Ciclev10033183m.g Citrus clementina HOM05D001415 ORTHO05D001075 7.2e-06 53.1 46 45.7
FvH4_3g04210 Fragaria vesca HOM05D008503 ORTHO05D001075 7.2e-06 53.1 47 48.9
Glyma.02G248900 Glycine max HOM05D001415 ORTHO05D001075 7.2e-06 53.1 39 51.3
Glyma.14G067500 Glycine max HOM05D001415 ORTHO05D001075 7.2e-06 53.1 39 51.3
Glyma.18G076400 Glycine max HOM05D001415 ORTHO05D001075 7.2e-06 53.1 36 55.6
Lalb_Chr19g0137921 Lupinus albus HOM05D001415 ORTHO05D001075 7.2e-06 53.1 47 48.9
Nn1g07145 Nelumbo nucifera HOM05D008941 ORTHO05D010842 7.2e-06 53.1 34 64.7
Glyma.11G220000 Glycine max HOM05D001415 ORTHO05D001075 9.5e-06 52.8 39 51.3
Glyma.18G037400 Glycine max HOM05D001415 ORTHO05D001075 9.5e-06 52.8 39 51.3
Sed0023003 Sechium edule HOM05D001415 ORTHO05D001075 9.5e-06 52.8 36 52.8


User provided reference genes

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