Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL9U10230 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1399.4 778 100.0
AL8G45410 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1328.9 778 95.1
AL5G12240 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1322.0 778 93.7
AL6G42690 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1314.7 778 92.7
AL1G61970 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1300.0 778 88.7
AL1G65160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1297.3 778 91.3
AL1G47450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1250.0 778 87.1
AL8G11870 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1246.9 772 85.9
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1240.3 772 89.9
AL3G38160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1219.9 778 87.0
AL4G24140 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1214.5 775 84.3
AL2G23360 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1212.2 778 87.3
AL1G57330 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1196.0 778 85.1
AL3G37710 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1195.3 778 86.1
AL5G23160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1192.2 772 86.8
AL2G18400 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1152.9 784 81.2
AL6G47370 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 0.0e+00 1098.2 778 79.0
AL5G19630 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.7e-292 1009.2 779 73.4
AL77U10020 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 6.7e-281 970.7 778 71.1
AL8G33480 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 5.2e-241 838.2 957 54.9
AT5G32590 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 1.3e-231 807.0 763 63.7
AL6G45550 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 7.1e-190 668.3 435 82.5
AL8G10170 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.7e-170 602.8 451 71.8
AL4G14310 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 4.6e-165 585.9 325 88.0
AT3G43148 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 6.3e-162 575.5 739 50.3
AT3G30230 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 4.1e-129 466.5 736 42.9
AT2G11010 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 2.0e-123 447.6 671 43.5
AT4G06688 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 6.2e-93 346.3 700 38.9
AL8G10150 Arabidopsis lyrata HOM05D000327 ORTHO05D000218 7.3e-86 322.8 249 76.7
AT1G36100 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 1.5e-62 245.4 162 76.5
AT5G35604 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 1.9e-62 245.0 281 53.0
AT3G32190 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 4.5e-51 207.2 256 54.7
AL4G17450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 6.5e-50 203.4 297 41.8
AT5G33806 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 5.7e-46 190.3 239 48.5
CARHR115630 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.0e-42 179.5 232 38.4
CARHR184520 Cardamine hirsuta HOM05D008458 ORTHO05D010628 2.1e-32 145.2 188 38.8
AT3G33293 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 6.3e-29 133.7 93 73.1
Carub.0007s3731 Capsella rubella HOM05D009492 ORTHO05D011693 6.3e-29 133.7 751 26.9
CARHR174650 Cardamine hirsuta HOM05D008458 ORTHO05D010628 8.2e-29 133.3 143 43.4
Carub.0008s0728 Capsella rubella HOM05D009492 ORTHO05D011693 3.1e-28 131.3 707 25.9
AT3G32150 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 4.1e-28 131.0 161 51.6
Carub.0007s3611 Capsella rubella HOM05D009492 ORTHO05D011693 2.6e-27 128.3 764 24.1
CARHR053560 Cardamine hirsuta HOM05D008458 ORTHO05D010628 7.7e-27 126.7 153 44.4
CARHR035710 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.7e-26 125.6 172 36.0
AT3G33393 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 3.8e-26 124.4 92 64.1
AT3G32200 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 8.5e-26 123.2 132 58.3
Carub.0005s0956 Capsella rubella HOM05D009492 ORTHO05D011693 5.5e-25 120.6 192 35.4
Carub.0002s1048 Capsella rubella HOM05D009492 ORTHO05D011693 2.7e-24 118.2 218 33.5
CARHR118560 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.8e-23 115.5 122 50.0
Carub.0002s0916 Capsella rubella HOM05D009492 ORTHO05D011693 4.0e-23 114.4 655 23.8
AT4G08097 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 6.8e-23 113.6 165 44.8
AT4G03830 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 1.2e-22 112.8 373 28.7
BcaC08g42951 Brassica carinata HOM05D006121 ORTHO05D009559 1.5e-22 112.5 205 32.2
Carub.0003s2904 Capsella rubella HOM05D006121 ORTHO05D009559 1.5e-22 112.5 678 24.2
BcaC04g23210 Brassica carinata HOM05D006121 ORTHO05D009559 9.7e-22 109.8 213 34.3
BcaC01g02132 Brassica carinata HOM05D006121 ORTHO05D009559 1.7e-21 109.0 208 29.8
BcaC07g37147 Brassica carinata HOM05D006121 ORTHO05D009559 1.7e-21 109.0 208 29.8
AL2G23320 Arabidopsis lyrata HOM05D009492 ORTHO05D011693 3.7e-21 107.8 699 23.0
BcaC05g27675 Brassica carinata HOM05D006121 ORTHO05D009559 4.8e-21 107.5 204 29.4
BcaC03g16521 Brassica carinata HOM05D006121 ORTHO05D009559 3.1e-20 104.8 182 33.0
Carub.0004s0672 Capsella rubella HOM05D009492 ORTHO05D011693 9.1e-20 103.2 526 26.0
BcaC09g49745 Brassica carinata HOM05D006121 ORTHO05D009559 1.2e-19 102.8 174 32.8
BcaC03g15130 Brassica carinata HOM05D006121 ORTHO05D009559 3.5e-19 101.3 228 30.3
Carub.0002s0942 Capsella rubella HOM05D009492 ORTHO05D011693 5.9e-19 100.5 152 37.5
CARHR105800 Cardamine hirsuta HOM05D008458 ORTHO05D010628 5.0e-18 97.4 122 38.5
Carub.0006s2644 Capsella rubella HOM05D009492 ORTHO05D011693 8.5e-18 96.7 467 26.3
Carub.0003s2742 Capsella rubella HOM05D009492 ORTHO05D011693 1.5e-17 95.9 168 32.7
AL1G50390 Arabidopsis lyrata HOM05D009492 ORTHO05D011693 1.9e-17 95.5 710 23.7
BcaC04g21502 Brassica carinata HOM05D006121 ORTHO05D009559 5.5e-17 94.0 174 31.0
BcaC09g49729 Brassica carinata HOM05D006121 ORTHO05D009559 5.5e-17 94.0 130 36.9
AT1G51172 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 7.2e-17 93.6 730 22.3
BcaC01g06835 Brassica carinata HOM05D006121 ORTHO05D009559 9.4e-17 93.2 160 31.9
BcaC09g49299 Brassica carinata HOM05D006121 ORTHO05D009559 1.6e-16 92.4 160 31.2
Carub.0002s0975 Capsella rubella HOM05D009492 ORTHO05D011693 1.6e-16 92.4 141 34.8
Carub.0004s1788 Capsella rubella HOM05D009492 ORTHO05D011693 1.6e-16 92.4 521 27.4
Carub.0001s3424 Capsella rubella HOM05D009492 ORTHO05D011693 2.1e-16 92.0 437 26.8
AT2G15420 Arabidopsis thaliana HOM05D010629 ORTHO05D005680 2.7e-16 91.7 182 31.9
BcaC02g11248 Brassica carinata HOM05D006121 ORTHO05D009559 3.6e-16 91.3 157 30.6
BcaC01g02238 Brassica carinata HOM05D006121 ORTHO05D009559 8.0e-16 90.1 245 29.4
BcaC07g37897 Brassica carinata HOM05D006121 ORTHO05D009559 2.3e-15 88.6 208 29.3
Carub.0108s0001 Capsella rubella HOM05D016834 ORTHO05D016863 2.3e-15 88.6 255 27.5
CARHR217200 Cardamine hirsuta HOM05D020629 ORTHO05D022218 4.0e-15 87.8 303 26.1
AL1G53160 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 5.2e-15 87.4 325 24.9
AL7G45790 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 5.2e-15 87.4 209 27.3
Carub.0007s3212 Capsella rubella HOM05D009492 ORTHO05D011693 5.2e-15 87.4 364 27.7
BcaC03g16227 Brassica carinata HOM05D006121 ORTHO05D009559 8.8e-15 86.7 242 27.7
Carub.0008s1221 Capsella rubella HOM05D016834 ORTHO05D016863 1.5e-14 85.9 255 26.7
BcaC01g05819 Brassica carinata HOM05D006121 ORTHO05D009559 5.7e-14 84.0 258 27.5
CARHR181090 Cardamine hirsuta HOM05D008458 ORTHO05D010628 5.7e-14 84.0 90 46.7
Carub.0007s2123 Capsella rubella HOM05D010629 ORTHO05D005680 1.7e-13 82.4 207 29.5
Carub.0003s2886 Capsella rubella HOM05D016834 ORTHO05D016863 2.2e-13 82.0 285 26.7
Carub.0002s1244 Capsella rubella HOM05D010629 ORTHO05D005680 2.8e-13 81.6 207 29.0
Carub.0073s0002 Capsella rubella HOM05D016834 ORTHO05D016863 2.8e-13 81.6 222 27.5
Carub.0003s2830 Capsella rubella HOM05D009492 ORTHO05D011693 3.7e-13 81.3 180 30.0
Carub.0006s0276 Capsella rubella HOM05D010629 ORTHO05D005680 3.7e-13 81.3 207 29.0
BcaC05g27433 Brassica carinata HOM05D006121 ORTHO05D009559 6.3e-13 80.5 214 29.9
BcaC03g17371 Brassica carinata HOM05D006121 ORTHO05D009559 8.3e-13 80.1 161 31.1
Carub.0007s3091 Capsella rubella HOM05D016834 ORTHO05D016863 8.3e-13 80.1 288 27.1
Carub.0005s0210 Capsella rubella HOM05D010629 ORTHO05D005680 1.1e-12 79.7 207 29.0
Carub.0353s0001 Capsella rubella HOM05D010629 ORTHO05D005680 1.1e-12 79.7 194 29.9
AL3G43600 Arabidopsis lyrata HOM05D010629 ORTHO05D005680 1.8e-12 79.0 174 27.0
Carub.0008s0719 Capsella rubella HOM05D009492 ORTHO05D011693 1.8e-12 79.0 182 29.7
CARHR289250 Cardamine hirsuta HOM05D020629 ORTHO05D022218 1.8e-12 79.0 388 24.7
AT1G46696 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 3.1e-12 78.2 190 28.4
AT1G20400 Arabidopsis thaliana HOM05D011598 ORTHO05D013181 4.1e-12 77.8 363 25.9
CARHR153510 Cardamine hirsuta HOM05D008458 ORTHO05D010628 3.5e-11 74.7 66 51.5
BolC8t48644H Brassica oleracea HOM05D002078 ORTHO05D005680 4.5e-11 74.3 207 27.5
Carub.0006s2612 Capsella rubella HOM05D016834 ORTHO05D016863 4.5e-11 74.3 200 27.5
Carub.0003s2394 Capsella rubella HOM05D016834 ORTHO05D016863 7.7e-11 73.6 356 25.3
AT3G42060 Arabidopsis thaliana HOM05D010629 ORTHO05D005680 1.7e-10 72.4 186 25.3
CARHR150680 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.7e-10 72.4 63 54.0
CARHR034160 Cardamine hirsuta HOM05D020629 ORTHO05D022218 2.3e-10 72.0 223 27.8
AL3G15920 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 3.8e-10 71.2 417 22.5
BcaC03g16371 Brassica carinata HOM05D006121 ORTHO05D009559 3.8e-10 71.2 177 29.4
Carub.0003s2807 Capsella rubella HOM05D010629 ORTHO05D005680 5.0e-10 70.9 185 24.9
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 6.6e-10 70.5 236 24.6
Carub.0009s0003 Capsella rubella HOM05D016834 ORTHO05D016863 6.6e-10 70.5 269 25.3
AL3G49830 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 8.6e-10 70.1 187 26.2
BcaC08g43200 Brassica carinata HOM05D002078 ORTHO05D005680 8.6e-10 70.1 144 32.6
Carub.0072s0001 Capsella rubella HOM05D010629 ORTHO05D005680 1.9e-09 68.9 186 24.2
Sp7g11540 Schrenkiella parvula HOM05D010529 ORTHO05D012528 3.3e-09 68.2 266 26.3
Carub.0004s1088 Capsella rubella HOM05D010629 ORTHO05D005680 5.5e-09 67.4 145 31.0
Carub.0005s0837 Capsella rubella HOM05D010629 ORTHO05D005680 5.5e-09 67.4 200 26.5
BcaC02g11611 Brassica carinata HOM05D002078 ORTHO05D005680 9.5e-09 66.6 235 25.1
BcaC07g37903 Brassica carinata HOM05D006121 ORTHO05D009559 9.5e-09 66.6 138 31.9
BcaB07g33910 Brassica carinata HOM05D002078 ORTHO05D005680 1.2e-08 66.2 123 33.3
BcaC03g17686 Brassica carinata HOM05D002078 ORTHO05D005680 1.2e-08 66.2 123 30.9
Carub.0006s2663 Capsella rubella HOM05D009492 ORTHO05D011693 1.2e-08 66.2 118 33.1
CSS0040956 Camellia sinensis var. sinensis HOM05D035337 ORTHO05D000116 2.1e-08 65.5 148 28.4
Carub.0007s3050 Capsella rubella HOM05D010629 ORTHO05D005680 2.1e-08 65.5 243 23.9
A08p08190 Brassica napus HOM05D008596 ORTHO05D003268 2.8e-08 65.1 218 22.9
BcaC02g10377 Brassica carinata HOM05D002078 ORTHO05D005680 3.6e-08 64.7 173 28.3
AT5G38190 Arabidopsis thaliana HOM05D034490 ORTHO05D019745 4.7e-08 64.3 187 27.8
BolC3t20163H Brassica oleracea HOM05D006121 ORTHO05D009559 4.7e-08 64.3 81 38.3
RcHm_v2.0_Chr2g0084191 Rosa chinensis HOM05D031301 ORTHO05D010628 4.7e-08 64.3 115 34.8
AL9U10150 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 6.1e-08 63.9 170 24.7
BcaC02g10131 Brassica carinata HOM05D002078 ORTHO05D005680 6.1e-08 63.9 154 29.2
BcaC01g04584 Brassica carinata HOM05D002078 ORTHO05D005680 8.0e-08 63.5 149 30.2
AT1G32010 Arabidopsis thaliana HOM05D010629 ORTHO05D019745 1.0e-07 63.2 189 27.0
CARHR181790 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.0e-07 63.2 63 47.6
BcaB03g15586 Brassica carinata HOM05D002078 ORTHO05D005680 1.4e-07 62.8 180 27.2
Carub.0002s1012 Capsella rubella HOM05D010629 ORTHO05D005680 1.4e-07 62.8 86 41.9
Thhalv10023163m.g Eutrema salsugineum HOM05D010629 ORTHO05D016863 1.8e-07 62.4 101 33.7
BcaC07g37462 Brassica carinata HOM05D002078 ORTHO05D005680 3.0e-07 61.6 123 31.7
BcaC09g50043 Brassica carinata HOM05D002078 ORTHO05D005680 4.0e-07 61.2 123 30.9
BcaC08g43580 Brassica carinata HOM05D006121 ORTHO05D009559 6.8e-07 60.5 118 28.0
BcaC02g10884 Brassica carinata HOM05D002078 ORTHO05D005680 8.9e-07 60.1 123 31.7
BcaC07g37265 Brassica carinata HOM05D006121 ORTHO05D009559 8.9e-07 60.1 103 33.0
BcaC09g49293 Brassica carinata HOM05D002078 ORTHO05D005680 8.9e-07 60.1 110 32.7
CARHR218210 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.5e-06 59.3 65 41.5
BcaC03g16343 Brassica carinata HOM05D002078 ORTHO05D005680 2.0e-06 58.9 123 31.7
CARHR104300 Cardamine hirsuta HOM05D008458 ORTHO05D010628 2.6e-06 58.5 70 38.6
BcaC02g09767 Brassica carinata HOM05D006121 ORTHO05D009559 3.4e-06 58.2 272 26.1
BcaC06g35841 Brassica carinata HOM05D006121 ORTHO05D009559 4.4e-06 57.8 103 32.0
A01p26930 Brassica napus HOM05D008596 ORTHO05D003268 5.7e-06 57.4 162 22.8
Sp6g07550 Schrenkiella parvula HOM05D010772 ORTHO05D005680 5.7e-06 57.4 101 29.7
BcaC03g16426 Brassica carinata HOM05D002078 ORTHO05D005680 9.8e-06 56.6 173 26.0


User provided reference genes

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