Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL954U10020 Arabidopsis lyrata HOM05D004251 ORTHO05D005010 6.9e-69 263.8 133 100.0
AL8G23350 Arabidopsis lyrata HOM05D004251 ORTHO05D005010 1.3e-38 163.3 79 100.0
AT5G49555 Arabidopsis thaliana HOM05D004251 ORTHO05D005010 3.7e-38 161.8 79 98.7
Carub.0008s2797 Capsella rubella HOM05D004251 ORTHO05D005010 3.7e-38 161.8 79 98.7
CARHR281200 Cardamine hirsuta HOM05D004251 ORTHO05D005010 1.3e-35 153.3 86 90.7
Thhalv10024792m.g Eutrema salsugineum HOM05D004251 ORTHO05D005010 3.2e-34 148.7 86 87.2
BcaNung00241 Brassica carinata HOM05D004251 ORTHO05D005010 5.5e-34 147.9 83 88.0
A01p21680 Brassica napus HOM05D004251 ORTHO05D005010 9.4e-34 147.1 82 87.8
BraA01t02077Z Brassica rapa HOM05D004251 ORTHO05D005010 9.4e-34 147.1 82 87.8
Atru.chr3.576 Acer truncatum HOM05D004251 ORTHO05D005010 2.7e-33 145.6 85 84.7
BcaC09g50275 Brassica carinata HOM05D004251 ORTHO05D005010 3.6e-33 145.2 82 86.6
C01p27030 Brassica napus HOM05D004251 ORTHO05D005010 3.6e-33 145.2 82 86.6
BolC1t02651H Brassica oleracea HOM05D004251 ORTHO05D005010 3.6e-33 145.2 82 86.6
COL.COLO4_22078 Corchorus olitorius HOM05D004251 ORTHO05D005010 6.1e-33 144.4 88 81.8
VMungo0251G3189 Vigna mungo HOM05D004251 ORTHO05D005010 1.0e-32 143.7 85 84.7
THA.LOC104821294 Tarenaya hassleriana HOM05D004251 ORTHO05D005010 1.4e-32 143.3 89 80.9
COL.COLO4_22077 Corchorus olitorius HOM05D004251 ORTHO05D005010 1.8e-32 142.9 87 82.8
Glyma.02G056800 Glycine max HOM05D004251 ORTHO05D005010 2.3e-32 142.5 83 84.3
Glyma.16G139600 Glycine max HOM05D004251 ORTHO05D005010 2.3e-32 142.5 87 81.6
THA.LOC104821560 Tarenaya hassleriana HOM05D004251 ORTHO05D005010 2.3e-32 142.5 89 80.9
Thecc.01G035600 Theobroma cacao HOM05D004251 ORTHO05D005010 2.3e-32 142.5 88 81.8
FAN19G0724 Fragaria x ananassa HOM05D004251 ORTHO05D005010 3.0e-32 142.1 86 82.6
FAN23G1347 Fragaria x ananassa HOM05D004251 ORTHO05D005010 3.0e-32 142.1 86 81.4
FAN28G2031 Fragaria x ananassa HOM05D004251 ORTHO05D005010 3.0e-32 142.1 86 81.4
Phvul.003G253700 Phaseolus vulgaris HOM05D004251 ORTHO05D005010 3.0e-32 142.1 87 80.5
Ciclev10025284m.g Citrus clementina HOM05D004251 ORTHO05D005010 4.0e-32 141.7 86 82.6
Duzib147G1661 Durio zibethinus HOM05D004251 ORTHO05D005010 4.0e-32 141.7 87 80.5
Gohir.D03G014500 Gossypium hirsutum HOM05D004251 ORTHO05D005010 4.0e-32 141.7 85 82.4
Gorai.003G014800 Gossypium raimondii HOM05D004251 ORTHO05D005010 4.0e-32 141.7 85 82.4
Psat4g093040 Pisum sativum HOM05D004251 ORTHO05D005010 4.0e-32 141.7 83 81.9
Prupe.7G154800 Prunus persica HOM05D004251 ORTHO05D005010 4.0e-32 141.7 88 81.8
Aa31LG1G15090 Aethionema arabicum HOM05D004251 ORTHO05D005010 6.8e-32 141.0 87 82.8
Lalb_Chr05g0227621 Lupinus albus HOM05D004251 ORTHO05D005010 6.8e-32 141.0 87 80.5
Sed0021773 Sechium edule HOM05D004251 ORTHO05D005010 6.8e-32 141.0 82 84.1
CiPaw.01G038300 Carya illinoinensis HOM05D004251 ORTHO05D005010 8.8e-32 140.6 83 83.1
AUR62004055 Chenopodium quinoa HOM05D004251 ORTHO05D005010 8.8e-32 140.6 86 80.2
Ciclev10025293m.g Citrus clementina HOM05D004251 ORTHO05D005010 8.8e-32 140.6 83 83.1
FvH4_1g13300 Fragaria vesca HOM05D004251 ORTHO05D005010 8.8e-32 140.6 86 81.4
Lj1g0003213 Lotus japonicus HOM05D004251 ORTHO05D005010 8.8e-32 140.6 78 88.5
Thecc.01G035500 Theobroma cacao HOM05D004251 ORTHO05D005010 8.8e-32 140.6 87 79.3
TWI73G1034 Tripterygium wilfordii HOM05D004251 ORTHO05D005010 8.8e-32 140.6 91 73.6
Cpa.g.sc39.20 Carica papaya HOM05D004251 ORTHO05D005010 1.2e-31 140.2 84 84.5
AUR62007569 Chenopodium quinoa HOM05D004251 ORTHO05D005010 1.2e-31 140.2 86 80.2
PGR102G3108 Punica granatum HOM05D004251 ORTHO05D005010 1.5e-31 139.8 83 83.1
Atru.chr3.571 Acer truncatum HOM05D004251 ORTHO05D005010 2.0e-31 139.4 83 83.1
ClCG07G008380 Citrullus lanatus HOM05D004251 ORTHO05D005010 2.0e-31 139.4 87 78.2
Haze_15087 Corylus avellana HOM05D004251 ORTHO05D005010 2.0e-31 139.4 84 82.1
RcHm_v2.0_Chr2g0101541 Rosa chinensis HOM05D004251 ORTHO05D005010 2.0e-31 139.4 87 79.3
FAN26G0083 Fragaria x ananassa HOM05D004251 ORTHO05D005010 2.6e-31 139.0 84 82.1
LjContig00448g0013547 Lotus japonicus HOM05D004251 ORTHO05D005010 2.6e-31 139.0 81 82.7
MD02G1147300 Malus domestica HOM05D004251 ORTHO05D005010 2.6e-31 139.0 89 79.8
Medtr8g077580 Medicago truncatula HOM05D004251 ORTHO05D005010 2.6e-31 139.0 86 77.9
Psat4g093160 Pisum sativum HOM05D004251 ORTHO05D005010 2.6e-31 139.0 83 80.7
Sp7g14220 Schrenkiella parvula HOM05D004251 ORTHO05D005010 2.6e-31 139.0 71 94.4
DCAR_017290 Daucus carota HOM05D004251 ORTHO05D005010 3.4e-31 138.7 80 86.2
MD15G1261600 Malus domestica HOM05D004251 ORTHO05D005010 3.4e-31 138.7 91 78.0
TAR625G0258 Trochodendron aralioides HOM05D004251 ORTHO05D005010 3.4e-31 138.7 88 79.5
HanXRQChr09g0274621 Helianthus annuus HOM05D004251 ORTHO05D005010 4.4e-31 138.3 85 80.0
Rhsim10G0122800 Rhododendron simsii HOM05D004251 ORTHO05D005010 4.4e-31 138.3 85 80.0
Hund13977 Selenicereus undatus HOM05D004251 ORTHO05D005010 4.4e-31 138.3 84 79.8
Lj2C453G4 Lonicera japonica HOM05D004251 ORTHO05D005010 5.7e-31 137.9 83 80.7
QL06p046194 Quercus lobata HOM05D004251 ORTHO05D005010 5.7e-31 137.9 82 81.7
Duzib147G0019 Durio zibethinus HOM05D004251 ORTHO05D005010 7.5e-31 137.5 88 78.4
EL10Ac6g15559 Beta vulgaris HOM05D004251 ORTHO05D005010 9.7e-31 137.1 83 79.5
MELO3C016373.2 Cucumis melo HOM05D004251 ORTHO05D005010 9.7e-31 137.1 88 76.1
ECA232G3289 Erigeron canadensis HOM05D004251 ORTHO05D005010 9.7e-31 137.1 84 81.0
Gohir.D03G014400 Gossypium hirsutum HOM05D004251 ORTHO05D005010 9.7e-31 137.1 87 81.6
Gorai.003G014700 Gossypium raimondii HOM05D004251 ORTHO05D005010 9.7e-31 137.1 87 81.6
QL06p046103 Quercus lobata HOM05D004251 ORTHO05D005010 9.7e-31 137.1 88 78.4
Ca_22268_v3 Cicer arietinum L. HOM05D004251 ORTHO05D005010 1.3e-30 136.7 86 76.7
Ca_22281_v3 Cicer arietinum L. HOM05D004251 ORTHO05D005010 1.3e-30 136.7 86 76.7
CsaV3_4G005780 Cucumis sativus L. HOM05D004251 ORTHO05D005010 1.3e-30 136.7 84 81.0
Dinv13532 Davidia involucrata HOM05D004251 ORTHO05D005010 1.3e-30 136.7 90 74.4
Lsat_1_v5_gn_4_152121 Lactuca sativa HOM05D004251 ORTHO05D005010 1.3e-30 136.7 84 79.8
PGR102G0408 Punica granatum HOM05D004251 ORTHO05D005010 1.3e-30 136.7 87 79.3
Hma1.2p1_0400F.1_g144420 Hydrangea macrophylla HOM05D004251 ORTHO05D005010 1.7e-30 136.3 87 77.0
Manes.02G094600 Manihot esculenta HOM05D004251 ORTHO05D005010 1.7e-30 136.3 85 77.6
Nitab4.5_0000178g0050 Nicotiana tabacum HOM05D004251 ORTHO05D005010 1.7e-30 136.3 84 76.2
Potri.007G025300 Populus trichocarpa HOM05D004251 ORTHO05D005010 1.7e-30 136.3 86 79.1
Eucgr.D01664 Eucalyptus grandis HOM05D004251 ORTHO05D005010 2.2e-30 136.0 88 75.0
QL06p046182 Quercus lobata HOM05D004251 ORTHO05D005010 2.2e-30 136.0 91 75.8
GSVIVG01018957001 Vitis vinifera HOM05D004251 ORTHO05D005010 2.2e-30 136.0 86 77.9
Actinidia36561 Actinidia chinensis HOM05D004251 ORTHO05D005010 2.8e-30 135.6 83 80.7
Solyc02g085250.4 Solanum lycopersicum HOM05D004251 ORTHO05D005010 2.8e-30 135.6 86 76.7
Sopen02g029950 Solanum pennellii HOM05D004251 ORTHO05D005010 2.8e-30 135.6 86 76.7
Nn5g29614 Nelumbo nucifera HOM05D004251 ORTHO05D005010 3.7e-30 135.2 90 75.6
vmacro12727 Vaccinium macrocarpon HOM05D004251 ORTHO05D005010 3.7e-30 135.2 87 77.0
GSVIVG01018958001 Vitis vinifera HOM05D004251 ORTHO05D005010 3.7e-30 135.2 86 76.7
arahy.Tifrunner.gnm1.ann1.UMLA17 Arachis hypogaea HOM05D004251 ORTHO05D005010 4.8e-30 134.8 84 81.0
Sabra07G0022400 Salix brachista HOM05D004251 ORTHO05D005010 4.8e-30 134.8 86 77.9
MSTRG.2762 Avicennia marina HOM05D004251 ORTHO05D005010 6.3e-30 134.4 76 82.9
Eucgr.D02612 Eucalyptus grandis HOM05D004251 ORTHO05D005010 6.3e-30 134.4 90 74.4
PGSC0003DMG402003505 Solanum tuberosum HOM05D004251 ORTHO05D005010 6.3e-30 134.4 89 74.2
arahy.Tifrunner.gnm1.ann1.UBH4LM Arachis hypogaea HOM05D004251 ORTHO05D005010 1.1e-29 133.7 73 86.3
ClCG01G019560 Citrullus lanatus HOM05D004251 ORTHO05D005010 1.1e-29 133.7 101 67.3
CSS0006960 Camellia sinensis var. sinensis HOM05D004251 ORTHO05D005010 3.1e-29 132.1 87 77.0
Nitab4.5_0001385g0110 Nicotiana tabacum HOM05D004251 ORTHO05D005010 3.1e-29 132.1 81 79.0
PSO170G5998 Papaver somniferum HOM05D004251 ORTHO05D005010 3.1e-29 132.1 88 73.9
MELO3C007827.2 Cucumis melo HOM05D004251 ORTHO05D005010 4.1e-29 131.7 85 77.6
Hma1.2p1_0224F.1_g094630 Hydrangea macrophylla HOM05D004251 ORTHO05D005010 5.3e-29 131.3 89 75.3
CANSAT01G2654 Cannabis sativa HOM05D004251 ORTHO05D005010 7.0e-29 131.0 91 73.6
Oeu033644.1 Olea europaea HOM05D004251 ORTHO05D005010 7.0e-29 131.0 88 75.0
Cc11_g04410 Coffea canephora HOM05D004251 ORTHO05D005010 9.1e-29 130.6 75 82.7
PSO210G3399 Papaver somniferum HOM05D004251 ORTHO05D005010 1.2e-28 130.2 88 72.7
A01p21670 Brassica napus HOM05D004251 ORTHO05D005010 1.6e-28 129.8 84 77.4
BraA01t02076Z Brassica rapa HOM05D004251 ORTHO05D005010 1.6e-28 129.8 84 77.4
Oeu041447.3 Olea europaea HOM05D004251 ORTHO05D005010 1.6e-28 129.8 88 73.9
Cpa.g.sc6.114 Carica papaya HOM05D004251 ORTHO05D005010 2.0e-28 129.4 87 72.4
CsaV3_6G046240 Cucumis sativus L. HOM05D004251 ORTHO05D005010 2.0e-28 129.4 85 75.3
ATR0733G178 Amborella trichopoda HOM05D004251 ORTHO05D005010 2.7e-28 129.0 68 86.8
Oeu051950.1 Olea europaea HOM05D004251 ORTHO05D005010 3.5e-28 128.6 72 84.7
Sed0017564 Sechium edule HOM05D004251 ORTHO05D005010 3.5e-28 128.6 86 74.4
SMO358G0577 Selaginella moellendorffii HOM05D004251 ORTHO05D005010 3.5e-28 128.6 104 65.4
arahy.Tifrunner.gnm1.ann1.05783X Arachis hypogaea HOM05D004251 ORTHO05D005010 7.7e-28 127.5 89 73.0
arahy.Tifrunner.gnm1.ann1.BIDD64 Arachis hypogaea HOM05D004251 ORTHO05D005010 7.7e-28 127.5 89 73.0
SMO194G0022 Selaginella moellendorffii HOM05D004251 ORTHO05D005010 7.7e-28 127.5 68 86.8
SEGI_15174 Sequoiadendron giganteum HOM05D004251 ORTHO05D005010 7.7e-28 127.5 71 83.1
Medtr1g034450 Medicago truncatula HOM05D004251 ORTHO05D005010 1.0e-27 127.1 87 73.6
Prupe.7G154900 Prunus persica HOM05D004251 ORTHO05D005010 1.0e-27 127.1 85 72.9
Oeu056756.2 Olea europaea HOM05D004251 ORTHO05D005010 1.3e-27 126.7 88 72.7
HPP92_017686 Vanilla planifolia HOM05D004251 ORTHO05D005010 1.7e-27 126.3 73 80.8
CiPaw.02G018000 Carya illinoinensis HOM05D004251 ORTHO05D005010 2.2e-27 125.9 86 73.3
Mapoly0014s0043 Marchantia polymorpha HOM05D004251 ORTHO05D005010 2.5e-26 122.5 71 83.1
Pp3c15_20190 Physcomitrium patens HOM05D004251 ORTHO05D005010 2.5e-26 122.5 71 83.1
AagrBONN_evm.TU.Sc2ySwM_228.727 Anthoceros agrestis HOM05D004251 ORTHO05D005010 9.4e-26 120.6 71 80.3
Aqoxy5G01628 Aquilegia oxysepala HOM05D004251 ORTHO05D005010 2.1e-25 119.4 66 84.8
CAN.G358.93 Capsicum annuum HOM05D004251 ORTHO05D005010 6.8e-24 114.4 59 89.8
Zm00001eb232720 Zea mays HOM05D004251 ORTHO05D005010 1.5e-23 113.2 92 66.3
Os12g0631800 Oryza sativa ssp. japonica HOM05D004251 ORTHO05D005010 3.4e-23 112.1 73 79.5
Lj1g0003281 Lotus japonicus HOM05D004251 ORTHO05D005010 8.3e-22 107.5 81 67.9
Peaxi162Scf00366g00011 Petunia axillaris HOM05D004251 ORTHO05D005010 4.5e-20 101.7 67 76.1
CDE04G2049 Ceratophyllum demersum HOM05D004251 ORTHO05D005010 7.7e-20 100.9 62 79.0
Ca_12487_v3 Cicer arietinum L. HOM05D004251 ORTHO05D005010 1.0e-19 100.5 70 68.6
unitig_21.g20954 Utricularia gibba HOM05D004251 ORTHO05D005010 2.5e-18 95.9 53 86.8
TPR.G24109 Trifolium pratense HOM05D004251 ORTHO05D005010 4.2e-18 95.1 86 60.5
BcaC09g50281 Brassica carinata HOM05D004251 ORTHO05D005010 2.8e-17 92.4 54 85.2
TPR.G18620 Trifolium pratense HOM05D004251 ORTHO05D005010 2.8e-17 92.4 89 57.3
LjContig00448g0018994 Lotus japonicus HOM05D004251 ORTHO05D005010 4.7e-17 91.7 81 60.5


User provided reference genes

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