Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL908U10010 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 9.0e-243 843.2 436 100.0
AL3G18860 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 2.0e-210 735.7 393 96.2
AT3G07530 Arabidopsis thaliana HOM05D006558 ORTHO05D008424 2.0e-197 692.6 394 89.6
Sp3g06440 Schrenkiella parvula HOM05D006558 ORTHO05D008424 4.4e-181 638.3 385 84.4
Thhalv10020176m.g Eutrema salsugineum HOM05D006558 ORTHO05D008424 2.1e-178 629.4 390 82.8
A05p40680 Brassica napus HOM05D006558 ORTHO05D008424 1.3e-172 610.1 389 78.7
Carub.0003s0708 Capsella rubella HOM05D006558 ORTHO05D008424 1.7e-172 609.8 398 79.4
C05p59790 Brassica napus HOM05D006558 ORTHO05D008424 1.4e-171 606.7 389 79.2
BraA05t22799Z Brassica rapa HOM05D006558 ORTHO05D008424 7.8e-170 600.9 414 74.9
BolC5t34633H Brassica oleracea HOM05D006558 ORTHO05D008424 1.1e-168 597.0 404 76.5
BcaC05g29545 Brassica carinata HOM05D006558 ORTHO05D008424 6.2e-159 564.7 390 76.4
Aa31LG10G8390 Aethionema arabicum HOM05D006558 ORTHO05D008424 2.2e-156 556.2 397 73.3
THA.LOC104826716 Tarenaya hassleriana HOM05D006558 ORTHO05D008424 1.9e-136 490.0 390 63.3
Dinv09252 Davidia involucrata HOM05D006558 ORTHO05D008424 4.3e-120 435.6 389 58.1
QL04p014186 Quercus lobata HOM05D006558 ORTHO05D008424 6.3e-119 431.8 380 57.1
CiPaw.13G011700 Carya illinoinensis HOM05D006558 ORTHO05D008424 9.1e-118 427.9 384 56.0
GSVIVG01000827001 Vitis vinifera HOM05D006558 ORTHO05D008424 1.0e-116 424.5 378 56.1
Gohir.D06G185500 Gossypium hirsutum HOM05D006558 ORTHO05D008424 2.4e-110 403.3 380 55.3
Gorai.010G217100 Gossypium raimondii HOM05D006558 ORTHO05D008424 7.0e-110 401.7 380 55.3
Gohir.A06G175900 Gossypium hirsutum HOM05D006558 ORTHO05D008424 9.1e-110 401.4 380 55.3
Ciclev10033512m.g Citrus clementina HOM05D006558 ORTHO05D008424 1.2e-109 401.0 380 52.1
TAR633G1807 Trochodendron aralioides HOM05D006558 ORTHO05D008424 2.0e-109 400.2 379 54.6
Prupe.2G031500 Prunus persica HOM05D006558 ORTHO05D008424 4.5e-109 399.1 379 53.3
Lj9C648T3 Lonicera japonica HOM05D006558 ORTHO05D008424 3.8e-108 396.0 382 53.4
Potri.004G236000 Populus trichocarpa HOM05D006558 ORTHO05D008424 5.0e-108 395.6 381 51.4
Actinidia06260 Actinidia chinensis HOM05D006558 ORTHO05D008424 8.5e-108 394.8 389 54.5
Rhsim07G0065000 Rhododendron simsii HOM05D006558 ORTHO05D008424 2.7e-106 389.8 415 51.3
TWI15G0624 Tripterygium wilfordii HOM05D006558 ORTHO05D008424 2.7e-106 389.8 400 51.0
Sed0005595 Sechium edule HOM05D006558 ORTHO05D008424 6.1e-106 388.7 408 48.5
Manes.12G022900 Manihot esculenta HOM05D006558 ORTHO05D008424 8.8e-105 384.8 382 52.4
HanXRQChr02g0050141 Helianthus annuus HOM05D006558 ORTHO05D008424 2.8e-103 379.8 386 51.0
Dinv00935 Davidia involucrata HOM05D006558 ORTHO05D008424 3.7e-103 379.4 389 54.2
FvH4_7g02620 Fragaria vesca HOM05D006558 ORTHO05D008424 3.7e-103 379.4 395 51.4
MBI13_g29518_MAGBIO Magnolia biondii HOM05D006558 ORTHO05D008424 2.4e-102 376.7 380 51.1
MELO3C016629.2 Cucumis melo HOM05D006558 ORTHO05D008424 5.3e-102 375.6 378 51.1
Duzib106G1800 Durio zibethinus HOM05D006558 ORTHO05D008424 5.3e-102 375.6 384 51.3
RcHm_v2.0_Chr1g0321321 Rosa chinensis HOM05D006558 ORTHO05D008424 7.7e-101 371.7 393 50.6
Ca_25408_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 1.0e-100 371.3 384 50.0
FAN01G2130 Fragaria x ananassa HOM05D006558 ORTHO05D008424 1.0e-100 371.3 395 50.9
CsaV3_5G011280 Cucumis sativus L. HOM05D006558 ORTHO05D008424 3.8e-100 369.4 373 50.4
ECA248G1764 Erigeron canadensis HOM05D006558 ORTHO05D008424 3.8e-100 369.4 382 50.8
Ca_25460_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 5.0e-100 369.0 384 50.5
FAN03G0498 Fragaria x ananassa HOM05D006558 ORTHO05D008424 6.5e-100 368.6 394 51.0
Psat5g217480 Pisum sativum HOM05D006558 ORTHO05D008424 4.2e-99 365.9 376 50.8
TPR.G9868 Trifolium pratense HOM05D006558 ORTHO05D008424 9.4e-99 364.8 392 48.7
Haze_03062 Corylus avellana HOM05D006558 ORTHO05D008424 1.0e-97 361.3 392 48.7
Lj3g0026268 Lotus japonicus HOM05D006558 ORTHO05D008424 2.3e-97 360.1 384 48.4
vmacro13739 Vaccinium macrocarpon HOM05D006558 ORTHO05D008424 5.2e-97 359.0 360 53.1
CANSAT78G0292 Cannabis sativa HOM05D006558 ORTHO05D008424 1.5e-96 357.5 399 47.1
CANSAT78G2064 Cannabis sativa HOM05D006558 ORTHO05D008424 1.5e-96 357.5 409 46.2
Glyma.11G153500 Glycine max HOM05D006558 ORTHO05D008424 2.0e-96 357.1 377 49.9
Aqoxy2G03825 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 4.4e-96 355.9 387 48.6
SGA_v2.0_scaffold232G43518 Striga asiatica HOM05D006558 ORTHO05D008424 5.7e-96 355.5 378 48.7
Aqoxy5G01848 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 1.7e-95 354.0 383 48.6
VMungo0251G1905 Vigna mungo HOM05D006558 ORTHO05D008424 1.7e-95 354.0 375 48.0
PGR031G1286 Punica granatum HOM05D006558 ORTHO05D008424 2.8e-95 353.2 389 45.8
Phvul.002G285400 Phaseolus vulgaris HOM05D006558 ORTHO05D008424 6.3e-95 352.1 374 48.9
Cc07_g20890 Coffea canephora HOM05D006558 ORTHO05D008424 1.1e-94 351.3 377 47.2
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 5.4e-94 349.0 383 46.2
CARHR082190 Cardamine hirsuta HOM05D006558 ORTHO05D008424 5.9e-93 345.5 189 90.5
Lalb_Chr25g0282291 Lupinus albus HOM05D006558 ORTHO05D008424 1.0e-92 344.7 377 48.3
Nn7g37154 Nelumbo nucifera HOM05D006558 ORTHO05D008424 1.0e-92 344.7 378 48.4
Nitab4.5_0002530g0080 Nicotiana tabacum HOM05D006558 ORTHO05D008424 1.3e-92 344.4 379 50.7
Oeu006113.1 Olea europaea HOM05D006558 ORTHO05D008424 4.2e-91 339.3 372 47.3
Sc11g0006630 Simmondsia chinensis HOM05D006558 ORTHO05D008424 2.7e-90 336.7 380 45.5
Peaxi162Scf00516g00328 Petunia axillaris HOM05D006558 ORTHO05D008424 4.7e-90 335.9 376 48.9
PSO675G8563 Papaver somniferum HOM05D006558 ORTHO05D008424 3.0e-89 333.2 378 47.4
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 5.7e-88 328.9 377 47.5
PGSC0003DMG400031735 Solanum tuberosum HOM05D006558 ORTHO05D008424 5.7e-88 328.9 379 48.8
Sopen03g028230 Solanum pennellii HOM05D006558 ORTHO05D008424 1.8e-86 323.9 378 48.7
AUR62037214 Chenopodium quinoa HOM05D006558 ORTHO05D008424 4.1e-86 322.8 378 49.2
Medtr3g019010 Medicago truncatula HOM05D006558 ORTHO05D008424 7.0e-86 322.0 417 43.4
Solyc03g097460.3 Solanum lycopersicum HOM05D006558 ORTHO05D008424 1.6e-85 320.9 374 48.4
AUR62026839 Chenopodium quinoa HOM05D006558 ORTHO05D008424 5.9e-85 318.9 377 49.1
ATR1093G023 Amborella trichopoda HOM05D006558 ORTHO05D008424 2.9e-84 316.6 423 42.6
arahy.Tifrunner.gnm1.ann1.898F3G Arachis hypogaea HOM05D006558 ORTHO05D008424 8.6e-84 315.1 377 44.3
Zm00001eb143980 Zea mays HOM05D006558 ORTHO05D008424 1.6e-82 310.8 376 42.8
arahy.Tifrunner.gnm1.ann1.S73JQ5 Arachis hypogaea HOM05D006558 ORTHO05D008424 1.8e-81 307.4 378 44.2
Lsat_1_v5_gn_1_114420 Lactuca sativa HOM05D006558 ORTHO05D008424 1.2e-80 304.7 385 44.7
HPP92_012099 Vanilla planifolia HOM05D006558 ORTHO05D008424 6.3e-79 298.9 394 42.1
CAN.G732.14 Capsicum annuum HOM05D006558 ORTHO05D008424 2.0e-77 293.9 379 44.9
MD00G1214500 Malus domestica HOM05D006558 ORTHO05D008424 3.3e-75 286.6 207 64.7
SEGI_06522 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 1.4e-73 281.2 396 41.7
Ah.10g030940 Amaranthus hybridus HOM05D006558 ORTHO05D008424 2.2e-71 273.9 283 49.1
Nitab4.5_0000021g1060 Nicotiana tabacum HOM05D006558 ORTHO05D008424 2.7e-69 266.9 417 40.8
DCAR_010372 Daucus carota HOM05D006558 ORTHO05D008424 2.2e-63 247.3 190 57.4
Psat5g217880 Pisum sativum HOM05D006558 ORTHO05D008424 3.7e-63 246.5 186 62.9
unitig_32.g11142 Utricularia gibba HOM05D006558 ORTHO05D008424 4.1e-62 243.0 303 42.6
Migut.K00935 Erythranthe guttata HOM05D006558 ORTHO05D008424 3.5e-61 240.0 301 46.2
Hund15718 Selenicereus undatus HOM05D006558 ORTHO05D008424 1.9e-59 234.2 438 36.8
COL.COLO4_35437 Corchorus olitorius HOM05D006558 ORTHO05D008424 5.8e-56 222.6 336 38.7
Mapoly0001s0524 Marchantia polymorpha HOM05D006558 ORTHO05D008424 2.2e-55 220.7 402 32.3
Eucgr.H05132 Eucalyptus grandis HOM05D006558 ORTHO05D008424 7.8e-53 212.2 399 35.8
Eucgr.H05138 Eucalyptus grandis HOM05D006558 ORTHO05D008424 4.4e-48 196.4 323 36.8
AagrBONN_evm.TU.Sc2ySwM_228.965 Anthoceros agrestis HOM05D006558 ORTHO05D008424 1.7e-47 194.5 378 31.7
CDE05G1491 Ceratophyllum demersum HOM05D006558 ORTHO05D008424 1.9e-46 191.0 254 39.8
Pp3c9_4730 Physcomitrium patens HOM05D006558 ORTHO05D008424 1.9e-46 191.0 395 31.6
Atru.chr11.2434 Acer truncatum HOM05D006558 ORTHO05D008424 6.0e-45 186.0 129 65.9
Cpa.g.sc96.48 Carica papaya HOM05D006558 ORTHO05D008424 3.9e-44 183.3 219 46.1
SMO144G0043 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 6.9e-41 172.6 389 31.6
SMO229G0006 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 6.9e-41 172.6 389 31.6
Cpa.g.sc96.50 Carica papaya HOM05D006558 ORTHO05D008424 2.9e-39 167.2 145 59.3
Thecc.10G170400 Theobroma cacao HOM05D006558 ORTHO05D008424 1.0e-36 158.7 121 65.3
Cc02_g29630 Coffea canephora HOM05D006558 ORTHO05D008424 4.8e-34 149.8 131 51.1
Atru.chr11.2433 Acer truncatum HOM05D006558 ORTHO05D008424 6.2e-34 149.4 148 52.0
Sabra01G0180400 Salix brachista HOM05D006558 ORTHO05D008424 8.1e-34 149.1 123 58.5
SGA_v2.0_scaffold2G00943 Striga asiatica HOM05D006558 ORTHO05D008424 1.3e-28 131.7 193 42.5
CBR_g72661 Chara braunii HOM05D000019 ORTHO05D000353 9.6e-27 125.6 148 43.2
DCAR_010374 Daucus carota HOM05D006558 ORTHO05D008424 2.1e-26 124.4 191 38.7
MD07G1035200 Malus domestica HOM05D006558 ORTHO05D008424 3.4e-16 90.5 134 40.3
Rhsim12G0031700 Rhododendron simsii HOM05D000017 ORTHO05D000013 5.0e-07 60.1 69 53.6
Nn7g37167 Nelumbo nucifera HOM05D006558 ORTHO05D008424 5.5e-06 56.6 47 59.6


User provided reference genes

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