Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.9e-56 222.2 112 100.0
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 2.2e-47 192.2 112 89.3
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 1.9e-43 179.1 112 79.5
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 6.9e-38 160.6 113 75.2
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 7.9e-34 147.1 115 69.6
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 3.3e-32 141.7 119 66.4
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 4.4e-32 141.4 113 69.9
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 1.7e-28 129.4 118 65.3
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 2.2e-28 129.0 126 54.0
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 6.5e-28 127.5 116 65.5
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 6.5e-28 127.5 116 65.5
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 6.5e-28 127.5 116 65.5
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.1e-27 126.7 120 59.2
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 3.2e-27 125.2 120 56.7
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 3.0e-25 118.6 120 55.0
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.5e-24 116.3 112 55.4
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.5e-24 116.3 120 54.2
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 2.0e-24 115.9 119 52.1
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 2.0e-24 115.9 119 52.1
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 1.3e-23 113.2 119 51.3
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 1.3e-23 113.2 119 51.3
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 1.3e-23 113.2 119 51.3
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 1.7e-23 112.8 125 49.6
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 6.3e-23 110.9 121 49.6
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 3.1e-22 108.6 119 50.4
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 3.1e-22 108.6 122 49.2
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 2.6e-21 105.5 113 50.4
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 2.6e-21 105.5 113 50.4
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 2.5e-19 99.0 122 48.4
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 5.5e-19 97.8 117 49.6
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 5.5e-19 97.8 117 49.6
BcaC09g50052 Brassica carinata HOM05D003805 ORTHO05D004300 9.4e-19 97.1 105 51.4
C01p29550 Brassica napus HOM05D003805 ORTHO05D004300 9.4e-19 97.1 105 51.4
BolC1t02898H Brassica oleracea HOM05D003805 ORTHO05D004300 9.4e-19 97.1 105 51.4
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 3.6e-18 95.1 146 41.1
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 8.0e-18 94.0 127 44.9
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 8.8e-17 90.5 124 47.6
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 7.5e-16 87.4 114 44.7
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 6.3e-15 84.3 125 46.4
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 8.2e-15 84.0 124 42.7
BcaC06g33329 Brassica carinata HOM05D003805 ORTHO05D004300 1.8e-14 82.8 135 39.3
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.8e-14 82.8 124 42.7
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 1.8e-14 82.8 138 41.3
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 2.4e-14 82.4 136 40.4
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 2.4e-14 82.4 129 41.1
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 4.1e-14 81.6 141 40.4
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 4.1e-14 81.6 141 40.4
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 4.1e-14 81.6 127 40.9
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 4.1e-14 81.6 132 43.2
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 5.3e-14 81.3 124 41.9
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 7.0e-14 80.9 123 42.3
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 9.1e-14 80.5 180 33.3
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 9.1e-14 80.5 129 39.5
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.6e-13 79.7 137 39.4
BcaC06g33330 Brassica carinata HOM05D003805 ORTHO05D004300 3.5e-13 78.6 154 39.0
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 3.5e-13 78.6 126 45.2
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 4.5e-13 78.2 127 40.2
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 4.5e-13 78.2 127 40.2
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 4.5e-13 78.2 128 40.6
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 4.5e-13 78.2 126 38.1
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 5.9e-13 77.8 77 57.1
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 7.7e-13 77.4 134 37.3
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 7.7e-13 77.4 127 37.8
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 1.0e-12 77.0 137 38.7
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 1.0e-12 77.0 128 39.1
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 1.0e-12 77.0 61 59.0
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 1.3e-12 76.6 133 41.4
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 1.3e-12 76.6 128 42.2
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 1.3e-12 76.6 131 38.9
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 1.3e-12 76.6 127 41.7
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.7e-12 76.3 129 38.8
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 1.7e-12 76.3 129 42.6
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 1.7e-12 76.3 126 41.3
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 1.7e-12 76.3 132 39.4
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 2.2e-12 75.9 129 38.8
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 2.2e-12 75.9 129 40.3
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 2.2e-12 75.9 141 39.0
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 2.2e-12 75.9 130 38.5
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 2.2e-12 75.9 127 39.4
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 2.9e-12 75.5 129 38.8
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 2.9e-12 75.5 129 38.0
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 2.9e-12 75.5 115 43.5
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 2.9e-12 75.5 128 38.3
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 2.9e-12 75.5 138 41.3
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 3.8e-12 75.1 129 38.8
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 3.8e-12 75.1 135 38.5
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 6.5e-12 74.3 126 41.3
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 6.5e-12 74.3 143 38.5
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 6.5e-12 74.3 132 38.6
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 8.5e-12 73.9 129 39.5
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 8.5e-12 73.9 129 39.5
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 8.5e-12 73.9 128 37.5
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 8.5e-12 73.9 129 38.0
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 8.5e-12 73.9 129 38.8
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 1.1e-11 73.6 134 36.6
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 1.1e-11 73.6 130 39.2
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 1.1e-11 73.6 127 36.2
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 1.1e-11 73.6 75 49.3
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 1.1e-11 73.6 125 39.2
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 1.1e-11 73.6 116 40.5
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.5e-11 73.2 129 38.8
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 1.5e-11 73.2 129 38.0
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 1.9e-11 72.8 147 35.4
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.9e-11 72.8 135 37.0
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 2.5e-11 72.4 129 38.8
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 2.5e-11 72.4 131 38.2
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 3.2e-11 72.0 129 38.0
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 3.2e-11 72.0 129 38.0
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 3.2e-11 72.0 129 38.0
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 3.2e-11 72.0 122 36.1
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 3.2e-11 72.0 83 44.6
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 4.2e-11 71.6 127 38.6
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 4.2e-11 71.6 129 38.8
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 4.2e-11 71.6 129 38.0
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 4.2e-11 71.6 131 38.2
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 4.2e-11 71.6 133 41.4
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 5.5e-11 71.2 129 37.2
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 5.5e-11 71.2 124 33.9
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 5.5e-11 71.2 123 37.4
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 7.2e-11 70.9 129 37.2
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 7.2e-11 70.9 129 37.2
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 9.4e-11 70.5 129 38.0
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 9.4e-11 70.5 123 37.4
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 9.4e-11 70.5 53 64.2
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 1.2e-10 70.1 129 37.2
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 1.2e-10 70.1 129 37.2
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 1.2e-10 70.1 70 47.1
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 1.6e-10 69.7 129 37.2
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 1.6e-10 69.7 131 36.6
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 2.1e-10 69.3 126 34.1
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 2.7e-10 68.9 80 41.2
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 2.7e-10 68.9 106 42.5
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 3.6e-10 68.6 129 37.2
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 3.6e-10 68.6 129 37.2
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 3.6e-10 68.6 135 39.3
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 4.7e-10 68.2 110 43.6
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 4.7e-10 68.2 131 34.4
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 6.1e-10 67.8 129 36.4
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 6.1e-10 67.8 129 33.3
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 8.0e-10 67.4 129 36.4
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 8.0e-10 67.4 129 36.4
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 8.0e-10 67.4 129 36.4
BcaC06g33072 Brassica carinata HOM05D003805 ORTHO05D004300 1.4e-09 66.6 105 40.0
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 3.0e-09 65.5 119 34.5
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 3.0e-09 65.5 111 40.5
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 3.0e-09 65.5 115 40.9
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 5.2e-09 64.7 128 36.7
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 5.2e-09 64.7 115 40.9
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 8.8e-09 63.9 128 36.7
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 7.5e-08 60.8 126 35.7
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 9.8e-08 60.5 125 36.0
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 2.2e-07 59.3 129 36.4
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 2.2e-07 59.3 128 35.2
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 2.8e-07 58.9 116 34.5
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 2.8e-07 58.9 116 37.1
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 3.7e-07 58.5 123 36.6
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 4.8e-07 58.2 58 51.7
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 4.8e-07 58.2 80 42.5
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 4.8e-07 58.2 118 36.4
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 4.8e-07 58.2 122 36.1
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 6.3e-07 57.8 91 36.3
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 6.3e-07 57.8 106 41.5
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 8.3e-07 57.4 115 34.8
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 1.8e-06 56.2 117 36.8
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 4.1e-06 55.1 82 39.0
Sabra07G0019300 Salix brachista HOM05D003805 ORTHO05D004300 4.1e-06 55.1 68 48.5
MBI10_g06731_MAGBIO Magnolia biondii HOM05D003805 ORTHO05D004300 5.4e-06 54.7 117 35.9


User provided reference genes

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