Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 2.7e-123 445.3 217 100.0
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 1.3e-120 436.4 217 97.7
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 1.8e-119 432.6 217 98.6
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 5.9e-118 427.6 217 95.4
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 8.0e-115 417.2 217 92.6
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 2.8e-112 408.7 218 91.3
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 1.8e-111 406.0 217 89.4
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 4.1e-111 404.8 209 93.8
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 5.9e-110 401.0 216 89.4
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 5.9e-110 401.0 217 88.0
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 7.7e-110 400.6 216 89.8
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 2.2e-109 399.1 219 89.5
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 2.2e-109 399.1 219 89.5
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 5.5e-108 394.4 220 89.1
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 2.0e-105 386.0 218 88.5
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 4.4e-105 384.8 218 87.6
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 4.4e-105 384.8 218 87.6
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 9.8e-105 383.6 218 87.6
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 2.8e-104 382.1 218 83.0
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 1.1e-103 380.2 218 84.9
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 1.1e-103 380.2 219 83.1
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 1.8e-103 379.4 218 83.0
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 9.1e-103 377.1 218 86.2
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 2.7e-102 375.6 218 82.6
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 5.0e-101 371.3 218 83.0
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 4.2e-100 368.2 218 82.6
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 3.0e-98 362.1 207 87.0
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 1.5e-97 359.8 220 79.5
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 2.6e-97 359.0 220 79.5
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 7.5e-97 357.5 236 75.8
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 4.9e-96 354.8 221 78.7
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 6.3e-96 354.4 221 78.7
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 8.3e-96 354.0 221 78.3
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.1e-95 352.1 221 78.3
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 5.4e-95 351.3 221 77.8
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 5.4e-95 351.3 222 78.8
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 9.2e-95 350.5 221 77.4
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 1.2e-94 350.1 221 77.4
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 2.0e-94 349.4 220 78.2
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 2.0e-94 349.4 220 78.2
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 1.0e-93 347.1 218 78.0
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 1.7e-93 346.3 220 77.7
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 2.3e-93 345.9 220 76.8
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 2.9e-93 345.5 218 77.5
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 3.8e-93 345.1 220 78.2
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 3.8e-93 345.1 220 78.2
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 6.6e-93 344.4 220 76.8
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 8.6e-93 344.0 220 76.8
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 8.6e-93 344.0 220 77.3
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 1.1e-92 343.6 220 76.8
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 1.1e-92 343.6 220 76.8
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 1.5e-92 343.2 220 77.3
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 1.9e-92 342.8 220 76.8
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 2.5e-92 342.4 220 75.9
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 4.3e-92 341.7 220 76.4
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 4.3e-92 341.7 219 74.9
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 5.6e-92 341.3 220 78.2
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 5.6e-92 341.3 220 75.9
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 5.6e-92 341.3 219 75.8
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 9.5e-92 340.5 220 76.4
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 1.2e-91 340.1 220 75.5
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 1.6e-91 339.7 220 77.3
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 2.1e-91 339.3 220 76.8
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 2.8e-91 339.0 219 77.2
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 3.6e-91 338.6 220 76.4
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.4e-90 336.7 192 83.9
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 2.3e-90 335.9 219 74.0
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 4.0e-90 335.1 220 73.2
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 5.2e-90 334.7 219 74.4
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 8.9e-90 334.0 192 82.3
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 1.5e-89 333.2 219 75.3
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 2.6e-89 332.4 220 75.5
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 3.4e-89 332.0 220 75.0
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 3.4e-89 332.0 217 73.3
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 9.8e-89 330.5 192 81.2
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 1.3e-88 330.1 192 83.3
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 1.4e-87 326.6 192 80.7
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 4.1e-87 325.1 229 72.1
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 4.1e-87 325.1 220 71.4
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 1.2e-86 323.6 219 72.6
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 1.6e-86 323.2 220 72.7
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 3.5e-86 322.0 195 80.0
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 7.8e-86 320.9 226 76.5
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 7.8e-86 320.9 226 76.5
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 1.0e-85 320.5 233 70.8
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 1.0e-85 320.5 219 73.1
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 1.0e-85 320.5 219 73.1
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 3.0e-85 318.9 221 71.5
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 1.1e-84 317.0 193 79.3
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 1.9e-84 316.2 221 76.9
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 3.3e-84 315.5 221 70.6
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 3.3e-84 315.5 219 71.7
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 3.3e-84 315.5 196 77.6
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 1.6e-83 313.2 221 71.0
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 3.6e-83 312.0 221 70.6
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 8.0e-83 310.8 196 76.5
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 1.0e-82 310.5 220 71.4
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 1.4e-82 310.1 220 69.1
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 1.4e-82 310.1 220 69.1
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 1.8e-82 309.7 220 69.5
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 1.8e-82 309.7 198 78.8
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 4.0e-82 308.5 194 78.4
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 8.9e-82 307.4 232 67.7
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 4.4e-81 305.1 193 76.2
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 7.5e-81 304.3 193 77.2
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 1.1e-79 300.4 219 64.8
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 1.1e-76 290.4 300 53.7
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 1.5e-76 290.0 195 73.8
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 5.6e-76 288.1 210 66.2
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 8.1e-75 284.3 179 77.7
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 2.6e-73 279.3 218 62.8
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 3.4e-73 278.9 218 60.1
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 5.8e-73 278.1 219 61.6
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 4.9e-72 275.0 204 68.1
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 2.4e-71 272.7 221 65.6
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 1.2e-70 270.4 192 70.3
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 2.1e-70 269.6 289 52.2
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 3.0e-69 265.8 213 62.0
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 3.0e-69 265.8 213 62.0
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 6.2e-67 258.1 218 60.1
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 8.1e-67 257.7 179 73.7
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 1.2e-65 253.8 172 73.8
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 1.3e-64 250.4 169 74.6
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 6.4e-64 248.1 221 56.1
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 3.2e-63 245.7 192 62.5
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 4.6e-62 241.9 163 74.2
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 1.9e-60 236.5 224 53.1
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 1.2e-59 233.8 194 59.3
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 4.0e-58 228.8 221 51.6
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 1.7e-56 223.4 158 72.2
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.4e-55 220.3 169 67.5
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 4.2e-55 218.8 195 60.0
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 4.2e-47 192.2 218 48.2
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 4.6e-46 188.7 182 55.5
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 2.3e-45 186.4 161 58.4
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 2.8e-43 179.5 150 59.3
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 2.8e-43 179.5 93 88.2
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 3.7e-35 152.5 220 35.0
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 1.8e-34 150.2 246 39.8
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 9.0e-34 147.9 228 36.0
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.5e-31 139.8 84 79.8
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 2.7e-30 136.3 215 36.7
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 1.9e-28 130.2 84 69.0
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 5.7e-28 128.6 100 69.0
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.1e-23 114.4 140 45.7
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 1.8e-21 107.1 77 72.7
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 6.7e-21 105.1 92 56.5
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 5.9e-09 65.5 146 37.7
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 1.1e-07 61.2 186 22.6


User provided reference genes

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