Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G44040 Arabidopsis lyrata HOM05D005694 ORTHO05D007402 1.4e-215 752.7 380 100.0
AT5G67290 Arabidopsis thaliana HOM05D005694 ORTHO05D007402 3.3e-201 704.9 380 94.5
Carub.0008s2721 Capsella rubella HOM05D005694 ORTHO05D007402 4.4e-201 704.5 379 92.6
CARHR280330 Cardamine hirsuta HOM05D005694 ORTHO05D007402 5.0e-197 691.0 379 91.0
BcaC05g29844 Brassica carinata HOM05D005694 ORTHO05D007402 2.8e-192 675.2 379 89.4
BolC5t34672H Brassica oleracea HOM05D005694 ORTHO05D007402 2.8e-192 675.2 379 89.4
Thhalv10004317m.g Eutrema salsugineum HOM05D005694 ORTHO05D007402 3.7e-192 674.9 378 89.7
Sp2g29370 Schrenkiella parvula HOM05D005694 ORTHO05D007402 9.1e-191 670.2 377 90.2
A05p41050 Brassica napus HOM05D005694 ORTHO05D007402 3.5e-190 668.3 381 88.2
BraA05t22832Z Brassica rapa HOM05D005694 ORTHO05D007402 3.2e-188 661.8 371 89.2
C05p60220 Brassica napus HOM05D005694 ORTHO05D007402 5.5e-188 661.0 404 83.4
BcaB06g28844 Brassica carinata HOM05D005694 ORTHO05D007402 2.3e-186 655.6 375 87.5
Aa31LG1G15820 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.3e-176 623.2 379 82.1
THA.LOC104819246 Tarenaya hassleriana HOM05D005694 ORTHO05D007402 6.0e-166 587.8 372 77.7
Thecc.01G063300 Theobroma cacao HOM05D005694 ORTHO05D007402 8.6e-165 583.9 376 76.3
COL.COLO4_11482 Corchorus olitorius HOM05D005694 ORTHO05D007402 5.6e-164 581.3 383 74.7
Gorai.007G218000 Gossypium raimondii HOM05D005694 ORTHO05D007402 1.6e-163 579.7 377 75.6
Gohir.D11G203300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 4.0e-162 575.1 376 75.3
Prupe.6G229100 Prunus persica HOM05D005694 ORTHO05D007402 6.8e-162 574.3 376 74.7
Duzib264G0643 Durio zibethinus HOM05D005694 ORTHO05D007402 9.9e-161 570.5 376 74.5
Cpa.g.sc6.99 Carica papaya HOM05D005694 ORTHO05D007402 3.7e-160 568.5 370 76.2
RcHm_v2.0_Chr2g0106661 Rosa chinensis HOM05D005694 ORTHO05D007402 4.6e-158 561.6 366 75.7
Lj4g0009127 Lotus japonicus HOM05D005694 ORTHO05D007402 1.0e-157 560.5 367 74.7
FvH4_1g16760 Fragaria vesca HOM05D005694 ORTHO05D007402 1.3e-157 560.1 370 75.1
Ciclev10025664m.g Citrus clementina HOM05D005694 ORTHO05D007402 9.5e-156 553.9 384 72.1
FAN23G2399 Fragaria x ananassa HOM05D005694 ORTHO05D007402 3.6e-155 552.0 370 73.8
MELO3C007585.2 Cucumis melo HOM05D005694 ORTHO05D007402 1.8e-154 549.7 377 71.9
Glyma.17G167200 Glycine max HOM05D005694 ORTHO05D007402 4.0e-154 548.5 368 73.1
Sabra05G0051000 Salix brachista HOM05D005694 ORTHO05D007402 6.8e-154 547.7 370 71.9
arahy.Tifrunner.gnm1.ann1.ZT89Y7 Arachis hypogaea HOM05D005694 ORTHO05D007402 1.2e-153 547.0 376 70.7
FAN19G0282 Fragaria x ananassa HOM05D005694 ORTHO05D007402 2.0e-153 546.2 370 73.8
SGA_v2.0_scaffold143G35788 Striga asiatica HOM05D005694 ORTHO05D007402 2.0e-153 546.2 372 71.5
Ca_22124_v3 Cicer arietinum L. HOM05D005694 ORTHO05D007402 3.4e-153 545.4 375 72.3
FAN26G1197 Fragaria x ananassa HOM05D005694 ORTHO05D007402 4.4e-153 545.0 370 73.5
Lsat_1_v5_gn_3_88661 Lactuca sativa HOM05D005694 ORTHO05D007402 7.6e-153 544.3 374 71.7
Potri.005G060500 Populus trichocarpa HOM05D005694 ORTHO05D007402 7.6e-153 544.3 370 71.6
Haze_15351 Corylus avellana HOM05D005694 ORTHO05D007402 2.2e-152 542.7 375 71.7
Oeu037163.1 Olea europaea HOM05D005694 ORTHO05D007402 3.8e-152 542.0 369 71.3
CsaV3_6G043550 Cucumis sativus L. HOM05D005694 ORTHO05D007402 6.4e-152 541.2 378 70.4
Psat4g084360 Pisum sativum HOM05D005694 ORTHO05D007402 6.4e-152 541.2 371 71.4
Sopen03g008170 Solanum pennellii HOM05D005694 ORTHO05D007402 6.4e-152 541.2 365 71.8
CANSAT25G2140 Cannabis sativa HOM05D005694 ORTHO05D007402 8.4e-152 540.8 383 70.8
Nitab4.5_0002657g0010 Nicotiana tabacum HOM05D005694 ORTHO05D007402 8.4e-152 540.8 375 70.9
Solyc03g044190.3 Solanum lycopersicum HOM05D005694 ORTHO05D007402 8.4e-152 540.8 365 71.8
VMungo0251G0564 Vigna mungo HOM05D005694 ORTHO05D007402 8.4e-152 540.8 364 71.7
Medtr4g094962 Medicago truncatula HOM05D005694 ORTHO05D007402 1.1e-151 540.4 370 71.9
Duzib147G1433 Durio zibethinus HOM05D005694 ORTHO05D007402 1.4e-151 540.0 381 71.4
MD02G1178800 Malus domestica HOM05D005694 ORTHO05D007402 2.4e-151 539.3 356 74.7
Phvul.003G240300 Phaseolus vulgaris HOM05D005694 ORTHO05D007402 2.4e-151 539.3 364 72.3
Hund16366 Selenicereus undatus HOM05D005694 ORTHO05D007402 3.2e-151 538.9 367 73.0
Lalb_Chr16g0388811 Lupinus albus HOM05D005694 ORTHO05D007402 7.1e-151 537.7 376 70.5
ClCG01G017080 Citrullus lanatus HOM05D005694 ORTHO05D007402 9.2e-151 537.3 378 70.9
CANSAT25G0291 Cannabis sativa HOM05D005694 ORTHO05D007402 1.2e-150 537.0 384 70.1
QL06p040237 Quercus lobata HOM05D005694 ORTHO05D007402 1.6e-150 536.6 384 70.1
Cfa004061 Carpinus fangiana HOM05D005694 ORTHO05D007402 2.1e-150 536.2 375 70.4
Migut.H00394 Erythranthe guttata HOM05D005694 ORTHO05D007402 2.7e-150 535.8 384 69.5
Gohir.A11G220300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 3.5e-150 535.4 377 71.1
Sed0004561 Sechium edule HOM05D005694 ORTHO05D007402 3.5e-150 535.4 376 71.5
Nitab4.5_0003962g0030 Nicotiana tabacum HOM05D005694 ORTHO05D007402 4.6e-150 535.0 367 71.4
PGSC0003DMG400014873 Solanum tuberosum HOM05D005694 ORTHO05D007402 7.8e-150 534.3 368 71.5
Manes.12G108400 Manihot esculenta HOM05D005694 ORTHO05D007402 1.0e-149 533.9 369 71.3
TPR.G23863 Trifolium pratense HOM05D005694 ORTHO05D007402 1.0e-149 533.9 374 70.9
AUR62003938 Chenopodium quinoa HOM05D005694 ORTHO05D007402 1.3e-149 533.5 368 71.2
Atru.chr3.251 Acer truncatum HOM05D005694 ORTHO05D007402 2.3e-149 532.7 376 69.7
PGR004G1079 Punica granatum HOM05D005694 ORTHO05D007402 2.3e-149 532.7 378 70.4
HanXRQChr12g0377261 Helianthus annuus HOM05D005694 ORTHO05D007402 3.9e-149 531.9 368 70.4
MSTRG.2849 Avicennia marina HOM05D005694 ORTHO05D007402 6.6e-149 531.2 371 70.4
EL10Ac6g15690 Beta vulgaris HOM05D005694 ORTHO05D007402 8.7e-149 530.8 375 72.0
PSO541G0377 Papaver somniferum HOM05D005694 ORTHO05D007402 5.6e-148 528.1 371 68.5
Peaxi162Scf00365g00618 Petunia axillaris HOM05D005694 ORTHO05D007402 7.3e-148 527.7 375 69.6
CiPaw.01G012900 Carya illinoinensis HOM05D005694 ORTHO05D007402 9.6e-148 527.3 371 70.6
AUR62038254 Chenopodium quinoa HOM05D005694 ORTHO05D007402 2.8e-147 525.8 380 67.9
Actinidia12019 Actinidia chinensis HOM05D005694 ORTHO05D007402 6.9e-146 521.2 360 72.5
arahy.Tifrunner.gnm1.ann1.MA1EVV Arachis hypogaea HOM05D005694 ORTHO05D007402 1.5e-145 520.0 444 60.1
CSS0006569 Camellia sinensis var. sinensis HOM05D005694 ORTHO05D007402 5.8e-145 518.1 364 71.4
Aqoxy6G02871 Aquilegia oxysepala HOM05D005694 ORTHO05D007402 1.3e-144 516.9 377 66.8
Glyma.05G097800 Glycine max HOM05D005694 ORTHO05D007402 3.8e-144 515.4 367 71.1
ECA246G1807 Erigeron canadensis HOM05D005694 ORTHO05D007402 2.4e-143 512.7 361 70.1
Rhsim10G0112600 Rhododendron simsii HOM05D005694 ORTHO05D007402 9.3e-143 510.8 366 69.4
TAR625G0317 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.6e-142 510.0 379 68.1
PSO675G2151 Papaver somniferum HOM05D005694 ORTHO05D007402 2.7e-142 509.2 372 66.9
Lj4g0018653 Lotus japonicus HOM05D005694 ORTHO05D007402 4.6e-142 508.4 370 69.7
DCAR_025759 Daucus carota HOM05D005694 ORTHO05D007402 3.3e-140 502.3 346 71.1
Nn1g04704 Nelumbo nucifera HOM05D005694 ORTHO05D007402 1.1e-138 497.3 362 69.1
Sc16g0005230 Simmondsia chinensis HOM05D005694 ORTHO05D007402 1.1e-138 497.3 377 64.7
Eucgr.I00787 Eucalyptus grandis HOM05D005694 ORTHO05D007402 3.1e-138 495.7 378 67.2
Eucgr.I00761 Eucalyptus grandis HOM05D005694 ORTHO05D007402 4.0e-138 495.4 378 67.5
TAR381G0027 Trochodendron aralioides HOM05D005694 ORTHO05D007402 4.0e-138 495.4 366 68.0
TAR381G0285 Trochodendron aralioides HOM05D005694 ORTHO05D007402 4.0e-138 495.4 366 68.0
TAR625G0863 Trochodendron aralioides HOM05D005694 ORTHO05D007402 9.0e-138 494.2 367 68.1
unitig_46.g18707 Utricularia gibba HOM05D005694 ORTHO05D007402 1.6e-134 483.4 373 64.1
Dinv26866 Davidia involucrata HOM05D005694 ORTHO05D007402 6.0e-134 481.5 377 66.6
Cc11_g04760 Coffea canephora HOM05D005694 ORTHO05D007402 5.6e-132 474.9 380 63.7
ATR1098G030 Amborella trichopoda HOM05D005694 ORTHO05D007402 4.0e-130 468.8 370 64.1
Sc16g0005220 Simmondsia chinensis HOM05D005694 ORTHO05D007402 2.4e-127 459.5 377 60.7
vmacro05254 Vaccinium macrocarpon HOM05D005694 ORTHO05D007402 2.1e-123 446.4 395 61.0
CDE06G0326 Ceratophyllum demersum HOM05D005694 ORTHO05D007402 1.0e-120 437.6 363 60.6
HPP92_017733 Vanilla planifolia HOM05D005694 ORTHO05D007402 1.0e-120 437.6 369 61.8
SEGI_26559 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 2.1e-118 429.9 377 58.1
Os07g0155100 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 4.6e-118 428.7 380 58.9
Zm00001eb300250 Zea mays HOM05D005694 ORTHO05D007402 3.0e-117 426.0 379 59.6
Mapoly0178s0017 Marchantia polymorpha HOM05D005694 ORTHO05D007402 1.6e-115 420.2 372 57.8
Pp3c14_12180 Physcomitrium patens HOM05D005694 ORTHO05D007402 3.7e-115 419.1 378 59.0
AagrBONN_evm.TU.Sc2ySwM_117.3787 Anthoceros agrestis HOM05D005694 ORTHO05D007402 1.1e-114 417.5 381 57.0
Dinv30033 Davidia involucrata HOM05D005694 ORTHO05D007402 1.2e-113 414.1 360 60.3
Aa31LG1G15830 Aethionema arabicum HOM05D005694 ORTHO05D007402 7.9e-110 401.4 227 85.9
SMO351G0208 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 1.8e-109 400.2 374 54.8
HanXRQChr02g0044351 Helianthus annuus HOM05D005694 ORTHO05D007402 9.7e-108 394.4 366 56.3
ECA238G4251 Erigeron canadensis HOM05D005694 ORTHO05D007402 5.3e-106 388.7 371 56.3
SMO367G0384 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 7.7e-105 384.8 377 52.5
HPP92_017700 Vanilla planifolia HOM05D005694 ORTHO05D007402 6.5e-96 355.1 315 60.0
SEGI_01647 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 3.2e-95 352.8 366 51.9
Lj7C77T1 Lonicera japonica HOM05D005694 ORTHO05D007402 9.4e-95 351.3 242 72.7
CAN.G572.58 Capsicum annuum HOM05D005694 ORTHO05D007402 2.6e-89 333.2 275 62.5
Mapoly0178s0018 Marchantia polymorpha HOM05D005694 ORTHO05D007402 2.2e-88 330.1 314 55.4
Cre16.g671450 Chlamydomonas reinhardtii HOM05D005694 ORTHO05D007402 2.5e-79 300.1 398 44.0
FAN28G1711 Fragaria x ananassa HOM05D005694 ORTHO05D007402 5.9e-73 278.9 176 74.4
FAN28G1889 Fragaria x ananassa HOM05D005694 ORTHO05D007402 5.9e-73 278.9 176 74.4
MCO03G407 Micromonas commoda HOM05D005694 ORTHO05D007402 2.0e-65 253.8 381 42.5
Actinidia36463 Actinidia chinensis HOM05D005694 ORTHO05D007402 1.5e-55 221.1 171 63.2
MCO09G374 Micromonas commoda HOM05D005694 ORTHO05D007402 1.1e-50 204.9 392 35.7
Aa31sc2295G20 Aethionema arabicum HOM05D005694 ORTHO05D007402 2.5e-47 193.7 130 76.2
Aa31LG1G15840 Aethionema arabicum HOM05D005694 ORTHO05D007402 6.4e-43 179.1 114 79.8
Aa31LG1G18440 Aethionema arabicum HOM05D005694 ORTHO05D007402 3.2e-42 176.8 140 68.6
Lj7A77T5 Lonicera japonica HOM05D005694 ORTHO05D007402 9.2e-42 175.3 116 69.8
Cfa023451 Carpinus fangiana HOM05D000115 ORTHO05D005317 8.1e-38 162.2 405 33.6
Medtr8g072720 Medicago truncatula HOM05D005694 ORTHO05D007402 6.9e-29 132.5 83 74.7
PRCOL_00002834 Prasinoderma coloniale HOM05D005694 ORTHO05D007402 3.8e-27 126.7 388 29.4
BcaC07g37383 Brassica carinata HOM05D005694 ORTHO05D031998 1.0e-16 92.0 108 53.7
BolC8t47687H Brassica oleracea HOM05D005694 ORTHO05D031998 1.0e-16 92.0 108 53.7
BolC8t47689H Brassica oleracea HOM05D005694 ORTHO05D031998 1.0e-16 92.0 108 53.7
Aa31LG1G18450 Aethionema arabicum HOM05D005694 ORTHO05D007402 3.9e-16 90.1 73 64.4
Aa31sc2295G10 Aethionema arabicum HOM05D005694 ORTHO05D007402 3.9e-16 90.1 73 64.4
BcaNung00805 Brassica carinata HOM05D005694 ORTHO05D007402 2.1e-14 84.3 72 63.9
Os01g0594800 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 2.1e-09 67.8 86 45.3
Cfa026332 Carpinus fangiana HOM05D005694 ORTHO05D123404 8.7e-08 62.4 301 24.6
HPP92_028926 Vanilla planifolia HOM05D005694 ORTHO05D427666 2.8e-06 57.4 227 29.1


User provided reference genes

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