Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G43980 Arabidopsis lyrata HOM05D005407 ORTHO05D006544 7.6e-116 421.0 300 100.0
AT5G67350 Arabidopsis thaliana HOM05D005407 ORTHO05D006544 4.8e-102 375.2 306 90.8
CARHR280260 Cardamine hirsuta HOM05D005407 ORTHO05D006544 4.1e-93 345.5 300 85.0
Carub.0008s2714 Capsella rubella HOM05D005407 ORTHO05D006544 3.9e-88 328.9 276 87.7
BolC7t42952H Brassica oleracea HOM05D005407 ORTHO05D006544 4.8e-78 295.4 305 78.0
A07p16540 Brassica napus HOM05D005407 ORTHO05D006544 3.5e-76 289.3 273 83.9
BraA07t29378Z Brassica rapa HOM05D005407 ORTHO05D006544 3.5e-76 289.3 273 83.9
Sp2g29310 Schrenkiella parvula HOM05D005407 ORTHO05D006544 1.9e-74 283.5 261 73.2
C09p51650 Brassica napus HOM05D005407 ORTHO05D006544 2.5e-74 283.1 276 67.8
BolC9t58026H Brassica oleracea HOM05D005407 ORTHO05D006544 2.5e-74 283.1 276 67.8
A09p09420 Brassica napus HOM05D005407 ORTHO05D006544 3.2e-74 282.7 274 70.1
BcaC04g19788 Brassica carinata HOM05D005407 ORTHO05D006544 7.2e-74 281.6 276 67.4
Thhalv10005384m.g Eutrema salsugineum HOM05D005407 ORTHO05D006544 3.0e-72 276.2 278 75.5
BolC9t53999H Brassica oleracea HOM05D005407 ORTHO05D006544 6.8e-72 275.0 274 78.1
BcaC04g23209 Brassica carinata HOM05D005407 ORTHO05D006544 1.2e-71 274.2 274 77.7
C09p11100 Brassica napus HOM05D005407 ORTHO05D006544 2.6e-71 273.1 274 78.8
BraA09t36591Z Brassica rapa HOM05D005407 ORTHO05D006544 4.8e-70 268.9 273 67.4
BcaB04g20064 Brassica carinata HOM05D005407 ORTHO05D006544 5.0e-67 258.8 274 69.0
Aa31LG1G15900 Aethionema arabicum HOM05D005407 ORTHO05D006544 5.9e-52 208.8 250 59.2
THA.LOC104827519 Tarenaya hassleriana HOM05D005407 ORTHO05D006544 2.3e-43 180.3 319 45.8
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.1e-24 116.7 209 44.0
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 5.2e-24 115.9 209 44.0
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 6.9e-24 115.5 341 33.4
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 8.9e-24 115.2 209 43.5
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 9.9e-23 111.7 339 32.4
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 9.9e-23 111.7 328 33.2
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 2.2e-22 110.5 299 32.1
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 6.4e-22 109.0 341 32.6
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 7.1e-21 105.5 332 32.2
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 2.7e-20 103.6 285 31.9
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 7.8e-20 102.1 215 36.7
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.3e-19 100.5 334 30.2
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 2.3e-19 100.5 332 31.3
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 3.3e-18 96.7 203 38.9
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 5.6e-18 95.9 213 38.0
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 1.6e-17 94.4 183 40.4
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 4.8e-17 92.8 219 36.5
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 4.8e-17 92.8 205 35.6
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 8.1e-17 92.0 283 31.1
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 1.1e-16 91.7 237 35.9
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.1e-16 91.7 237 35.9
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.1e-16 91.7 237 35.9
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 1.1e-16 91.7 214 36.0
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 1.1e-16 91.7 175 40.0
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 1.4e-16 91.3 222 35.6
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.8e-16 90.9 237 36.3
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 1.8e-16 90.9 287 32.4
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 2.4e-16 90.5 203 34.5
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 6.9e-16 89.0 243 36.6
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 9.0e-16 88.6 219 34.2
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 9.0e-16 88.6 215 35.3
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 9.0e-16 88.6 215 35.3
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 2.0e-15 87.4 194 34.5
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 2.6e-15 87.0 217 35.9
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 4.5e-15 86.3 221 34.4
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 4.5e-15 86.3 210 35.2
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 5.8e-15 85.9 210 35.2
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 7.6e-15 85.5 233 33.9
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 9.9e-15 85.1 217 34.6
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 2.2e-14 84.0 331 26.9
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 2.2e-14 84.0 212 35.8
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 2.2e-14 84.0 199 34.2
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 3.8e-14 83.2 287 29.6
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 4.9e-14 82.8 228 36.4
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 6.4e-14 82.4 241 34.0
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 8.4e-14 82.0 227 33.0
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 8.4e-14 82.0 288 30.9
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 1.1e-13 81.6 318 28.6
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 1.4e-13 81.3 226 35.0
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 4.2e-13 79.7 292 29.1
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 4.2e-13 79.7 187 36.4
Atru.chr3.207 Acer truncatum HOM05D005407 ORTHO05D006544 5.4e-13 79.3 162 38.3
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 5.4e-13 79.3 198 33.3
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 9.3e-13 78.6 216 34.7
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 1.6e-12 77.8 208 35.1
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 1.6e-12 77.8 216 33.3
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 3.5e-12 76.6 321 27.7
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 3.5e-12 76.6 317 26.8
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 1.3e-11 74.7 227 33.5
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 1.8e-11 74.3 214 32.2
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 2.3e-11 73.9 196 34.7
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 2.3e-11 73.9 184 35.3
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 3.0e-11 73.6 193 35.8
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 3.9e-11 73.2 226 32.3
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 5.1e-11 72.8 226 32.7
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 6.7e-11 72.4 202 34.7
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 1.1e-10 71.6 205 34.1
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 1.9e-10 70.9 194 33.5
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.9e-10 70.9 185 35.1
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 1.9e-10 70.9 215 34.0
Manes.12G112400 Manihot esculenta HOM05D005407 ORTHO05D006544 1.9e-10 70.9 208 31.2
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 1.9e-10 70.9 191 34.0
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 5.6e-10 69.3 213 32.4
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 5.6e-10 69.3 308 29.5
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 7.4e-10 68.9 303 28.1
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 9.6e-10 68.6 189 35.4
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.3e-09 68.2 184 35.9
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 2.1e-09 67.4 219 31.5
HanXRQChr11g0322471 Helianthus annuus HOM05D005407 ORTHO05D006544 3.6e-09 66.6 175 31.4
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 6.2e-09 65.9 318 26.7
unitig_52.g17607 Utricularia gibba HOM05D005407 ORTHO05D006544 6.2e-09 65.9 161 37.9
unitig_62.g23420 Utricularia gibba HOM05D005407 ORTHO05D006544 8.1e-09 65.5 191 34.6
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 1.1e-08 65.1 302 25.8
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 1.1e-08 65.1 214 32.2
CDE04G2817 Ceratophyllum demersum HOM05D005407 ORTHO05D006544 1.4e-08 64.7 192 34.4
Peaxi162Scf00365g00076 Petunia axillaris HOM05D005407 ORTHO05D006544 2.4e-08 63.9 176 33.0
CSS0012811 Camellia sinensis var. sinensis HOM05D005407 ORTHO05D006544 3.1e-08 63.5 78 50.0
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 5.3e-08 62.8 302 27.5
HanXRQChr12g0377191 Helianthus annuus HOM05D005407 ORTHO05D006544 6.9e-08 62.4 95 46.3
TWI09G0600 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 1.2e-07 61.6 215 31.2
Rhsim08G0096100 Rhododendron simsii HOM05D005407 ORTHO05D006544 2.0e-07 60.8 153 37.3
vmacro17985 Vaccinium macrocarpon HOM05D005407 ORTHO05D006544 2.6e-07 60.5 94 38.3
SGA_v2.0_scaffold15G07407 Striga asiatica HOM05D005407 ORTHO05D006544 3.4e-07 60.1 191 30.9
arahy.Tifrunner.gnm1.ann1.UV71K9 Arachis hypogaea HOM05D005407 ORTHO05D006544 4.5e-07 59.7 195 27.7
arahy.Tifrunner.gnm1.ann1.IRX7P6 Arachis hypogaea HOM05D005407 ORTHO05D006544 5.8e-07 59.3 194 28.4
SGA_v2.0_scaffold143G35780 Striga asiatica HOM05D005407 ORTHO05D006544 5.8e-07 59.3 193 35.2
Migut.H00374 Erythranthe guttata HOM05D005407 ORTHO05D006544 9.9e-07 58.5 205 31.7
ATR0580G303 Amborella trichopoda HOM05D003020 ORTHO05D003226 3.8e-06 56.6 170 31.8
Peaxi162Scf00264g00321 Petunia axillaris HOM05D005407 ORTHO05D006544 6.4e-06 55.8 276 31.5
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 8.4e-06 55.5 295 34.6


User provided reference genes

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