Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 2.6e-84 315.5 175 100.0
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 2.0e-71 272.7 177 90.4
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 2.8e-62 242.3 182 83.0
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 1.4e-61 240.0 182 78.0
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 1.4e-61 240.0 182 78.0
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 1.4e-61 240.0 182 78.0
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 4.1e-61 238.4 182 81.9
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 2.0e-60 236.1 182 81.3
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 2.0e-60 236.1 182 81.3
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 1.0e-59 233.8 182 76.4
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 1.0e-59 233.8 182 76.4
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 1.9e-58 229.6 182 80.2
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 1.9e-58 229.6 182 80.2
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 3.2e-58 228.8 182 80.2
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 7.2e-58 227.6 182 79.7
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 1.4e-56 223.4 182 78.0
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 4.4e-55 218.4 181 72.4
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 3.1e-53 212.2 178 74.2
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 9.1e-53 210.7 176 71.0
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 2.7e-52 209.1 178 73.6
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 5.9e-52 208.0 178 73.0
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 5.9e-52 208.0 178 73.0
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 7.7e-52 207.6 178 73.6
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 8.0e-49 197.6 181 75.7
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 2.0e-28 129.8 183 54.6
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.1e-26 124.0 186 44.6
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 8.1e-25 117.9 191 51.8
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 1.5e-23 113.6 187 40.6
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 7.5e-23 111.3 209 38.3
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 2.2e-22 109.8 129 48.1
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 8.3e-22 107.8 190 38.4
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 3.2e-21 105.9 209 37.3
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 3.2e-21 105.9 199 39.2
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 5.4e-21 105.1 189 39.7
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 7.1e-21 104.8 183 39.3
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 7.1e-21 104.8 183 39.3
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 1.2e-20 104.0 119 52.1
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 2.7e-20 102.8 134 50.0
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 2.7e-20 102.8 193 40.4
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 1.3e-19 100.5 114 50.9
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 3.9e-19 99.0 137 40.1
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 6.6e-19 98.2 187 40.6
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 6.6e-19 98.2 205 37.6
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 8.6e-19 97.8 174 37.4
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 1.5e-18 97.1 185 38.9
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 1.9e-18 96.7 127 45.7
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.9e-18 96.7 174 39.7
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 3.3e-18 95.9 144 43.8
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 3.3e-18 95.9 195 36.9
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 3.3e-18 95.9 219 38.4
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 3.3e-18 95.9 103 51.5
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 3.3e-18 95.9 102 50.0
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 3.3e-18 95.9 208 37.0
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 3.3e-18 95.9 226 32.7
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 4.3e-18 95.5 184 40.2
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 4.3e-18 95.5 142 43.0
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 5.6e-18 95.1 149 40.9
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 5.6e-18 95.1 143 44.1
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 9.5e-18 94.4 132 43.9
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 9.5e-18 94.4 144 44.4
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 1.2e-17 94.0 234 32.5
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.6e-17 93.6 111 53.2
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 1.6e-17 93.6 146 43.2
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.6e-17 93.6 136 49.3
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.1e-17 93.2 104 49.0
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.8e-17 92.8 182 38.5
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 2.8e-17 92.8 212 34.9
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 3.6e-17 92.4 191 36.1
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 3.6e-17 92.4 209 35.4
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 4.7e-17 92.0 144 43.8
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 6.2e-17 91.7 137 42.3
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 8.1e-17 91.3 212 34.4
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 8.1e-17 91.3 130 43.1
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.4e-16 90.5 212 34.4
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 1.4e-16 90.5 205 35.6
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 1.8e-16 90.1 127 44.1
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 1.8e-16 90.1 123 45.5
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 2.3e-16 89.7 112 49.1
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 4.0e-16 89.0 107 49.5
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 6.8e-16 88.2 184 38.6
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 6.8e-16 88.2 140 43.6
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 8.9e-16 87.8 137 43.8
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 8.9e-16 87.8 122 41.0
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 8.9e-16 87.8 123 43.1
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 8.9e-16 87.8 223 36.3
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 1.2e-15 87.4 146 40.4
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 1.5e-15 87.0 143 40.6
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 1.5e-15 87.0 125 40.8
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 1.5e-15 87.0 107 48.6
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 1.5e-15 87.0 128 43.8
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 1.5e-15 87.0 98 51.0
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 2.0e-15 86.7 143 40.6
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 2.0e-15 86.7 121 44.6
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 2.0e-15 86.7 129 48.1
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 2.0e-15 86.7 138 42.0
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 2.0e-15 86.7 144 41.7
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 2.6e-15 86.3 109 46.8
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 2.6e-15 86.3 107 47.7
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 2.6e-15 86.3 184 34.2
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 2.6e-15 86.3 107 49.5
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 2.6e-15 86.3 230 34.8
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 3.4e-15 85.9 119 47.1
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 3.4e-15 85.9 101 47.5
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 3.4e-15 85.9 133 39.8
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 5.8e-15 85.1 108 44.4
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 5.8e-15 85.1 108 49.1
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 5.8e-15 85.1 108 49.1
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 7.6e-15 84.7 103 48.5
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 7.6e-15 84.7 101 47.5
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 7.6e-15 84.7 230 33.5
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 7.6e-15 84.7 106 47.2
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 9.9e-15 84.3 191 34.6
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 9.9e-15 84.3 112 45.5
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 9.9e-15 84.3 121 44.6
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 1.7e-14 83.6 105 48.6
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 1.7e-14 83.6 108 47.2
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 2.9e-14 82.8 113 43.4
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 2.9e-14 82.8 145 40.0
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 2.9e-14 82.8 118 46.6
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 3.7e-14 82.4 118 46.6
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 3.7e-14 82.4 119 42.9
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 3.7e-14 82.4 112 44.6
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 6.4e-14 81.6 122 43.4
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 6.4e-14 81.6 119 44.5
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 8.4e-14 81.3 222 33.8
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 8.4e-14 81.3 99 49.5
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 8.4e-14 81.3 115 47.8
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 1.1e-13 80.9 119 44.5
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 1.1e-13 80.9 163 35.6
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 1.9e-13 80.1 106 41.5
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 3.2e-13 79.3 197 37.6
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 4.1e-13 79.0 95 48.4
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 7.1e-13 78.2 68 64.7
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 7.1e-13 78.2 166 36.1
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 9.2e-13 77.8 122 42.6
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 1.2e-12 77.4 116 42.2
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 1.2e-12 77.4 130 39.2
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 1.6e-12 77.0 197 33.5
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 2.1e-12 76.6 225 30.7
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 2.1e-12 76.6 145 35.9
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 2.1e-12 76.6 206 32.0
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 2.7e-12 76.3 122 40.2
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 4.6e-12 75.5 113 42.5
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 4.6e-12 75.5 113 42.5
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 6.0e-12 75.1 122 41.0
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 2.3e-11 73.2 104 44.2
ClCG02G012390 Citrullus lanatus HOM05D004032 ORTHO05D004462 8.6e-11 71.2 94 45.7
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 1.9e-10 70.1 125 36.0
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 3.3e-10 69.3 95 45.3
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 1.2e-09 67.4 97 46.4
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.6e-09 67.0 196 30.6
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 2.1e-09 66.6 196 30.6
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 2.8e-09 66.2 97 45.4
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 6.2e-09 65.1 46 63.0
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 8.1e-09 64.7 45 73.3
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 1.1e-08 64.3 123 39.0
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 1.4e-08 63.9 147 36.1
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 5.2e-08 62.0 42 66.7
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 6.8e-08 61.6 169 33.1
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 1.2e-07 60.8 50 62.0
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 2.6e-07 59.7 46 58.7
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 3.4e-07 59.3 52 53.8
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 3.4e-07 59.3 45 62.2
Zm00001eb264720 Zea mays HOM05D036073 ORTHO05D004462 3.4e-07 59.3 88 38.6
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 5.8e-07 58.5 107 37.4
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 7.6e-07 58.2 117 37.6
HPP92_018370 Vanilla planifolia HOM05D007665 ORTHO05D008293 9.9e-07 57.8 52 53.8
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.3e-06 57.4 117 38.5
PSO063G5967 Papaver somniferum HOM05D007665 ORTHO05D008293 8.4e-06 54.7 49 55.1


User provided reference genes

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