Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G43594 Arabidopsis lyrata HOM05D008250 ORTHO05D010361 1.3e-25 119.0 61 100.0
Carub.0008s2677 Capsella rubella HOM05D008250 ORTHO05D010361 2.6e-23 111.3 60 91.7
AT5G65880 Arabidopsis thaliana HOM05D008250 ORTHO05D010361 5.0e-22 107.1 61 93.4
BcaB02g09904 Brassica carinata HOM05D008250 ORTHO05D010361 8.7e-19 96.3 57 86.0
BcaC01g02825 Brassica carinata HOM05D008250 ORTHO05D010361 1.1e-18 95.9 57 86.0
BraA06t26203Z Brassica rapa HOM05D008250 ORTHO05D010361 1.1e-18 95.9 57 86.0
C03p59760 Brassica napus HOM05D008250 ORTHO05D010361 7.4e-18 93.2 57 84.2
C03p59770 Brassica napus HOM05D008250 ORTHO05D010361 7.4e-18 93.2 57 84.2
BolC3t18239H Brassica oleracea HOM05D008250 ORTHO05D010361 7.4e-18 93.2 57 84.2
BolC3t18240H Brassica oleracea HOM05D008250 ORTHO05D010361 7.4e-18 93.2 57 84.2
Thhalv10005252m.g Eutrema salsugineum HOM05D008250 ORTHO05D010361 1.6e-17 92.0 57 82.5
CARHR279880 Cardamine hirsuta HOM05D008250 ORTHO05D010361 8.2e-17 89.7 62 74.2
CiPaw.01G002500 Carya illinoinensis HOM05D008250 ORTHO05D010361 4.1e-16 87.4 56 78.6
Hma1.2p1_1760F.1_g301220 Hydrangea macrophylla HOM05D008250 ORTHO05D010361 2.2e-14 81.6 52 75.0
Thecc.01G075500 Theobroma cacao HOM05D008250 ORTHO05D010361 6.5e-14 80.1 50 74.0
Lsat_1_v5_gn_4_159680 Lactuca sativa HOM05D008250 ORTHO05D010361 8.5e-14 79.7 45 82.2
HanXRQChr09g0255361 Helianthus annuus HOM05D008250 ORTHO05D010361 1.1e-13 79.3 55 67.3
COL.COLO4_11607 Corchorus olitorius HOM05D008250 ORTHO05D010361 1.4e-13 79.0 50 76.0
ClCG02G012200 Citrullus lanatus HOM05D008250 ORTHO05D010361 1.9e-13 78.6 56 71.4
Gohir.A12G078200 Gossypium hirsutum HOM05D008250 ORTHO05D010361 2.5e-13 78.2 50 72.0
Gohir.D12G076400 Gossypium hirsutum HOM05D008250 ORTHO05D010361 3.2e-13 77.8 50 70.0
Gorai.008G085000 Gossypium raimondii HOM05D008250 ORTHO05D010361 3.2e-13 77.8 50 70.0
Migut.H00327 Erythranthe guttata HOM05D008250 ORTHO05D010361 5.5e-13 77.0 43 83.7
Potri.007G006700 Populus trichocarpa HOM05D008250 ORTHO05D010361 5.5e-13 77.0 56 69.6
GSVIVG01002948001 Vitis vinifera HOM05D008250 ORTHO05D010361 5.5e-13 77.0 55 72.7
GSVIVG01004436001 Vitis vinifera HOM05D008250 ORTHO05D010361 5.5e-13 77.0 55 72.7
Actinidia16414 Actinidia chinensis HOM05D008250 ORTHO05D010361 9.4e-13 76.3 55 63.6
Manes.12G117000 Manihot esculenta HOM05D008250 ORTHO05D010361 9.4e-13 76.3 56 69.6
TWI74G1530 Tripterygium wilfordii HOM05D008250 ORTHO05D010361 1.6e-12 75.5 60 65.0
Sc03g0002500 Simmondsia chinensis HOM05D008250 ORTHO05D010361 2.1e-12 75.1 56 66.1
Nn6g34516 Nelumbo nucifera HOM05D008250 ORTHO05D010361 2.7e-12 74.7 45 77.8
Ciclev10026916m.g Citrus clementina HOM05D008250 ORTHO05D010361 3.6e-12 74.3 56 67.9
Aqoxy6G02462 Aquilegia oxysepala HOM05D008250 ORTHO05D010361 4.6e-12 73.9 50 80.0
Phvul.003G233500 Phaseolus vulgaris HOM05D008250 ORTHO05D010361 4.6e-12 73.9 55 61.8
Atru.chr3.1053 Acer truncatum HOM05D008250 ORTHO05D010361 1.0e-11 72.8 56 67.9
Prupe.6G217600 Prunus persica HOM05D008250 ORTHO05D010361 1.8e-11 72.0 38 86.8
Glyma.05G107700 Glycine max HOM05D008250 ORTHO05D010361 3.0e-11 71.2 38 84.2
MD02G1189100 Malus domestica HOM05D008250 ORTHO05D010361 3.0e-11 71.2 56 69.6
Glyma.17G159100 Glycine max HOM05D008250 ORTHO05D010361 3.9e-11 70.9 37 86.5
Sed0009961 Sechium edule HOM05D008250 ORTHO05D010361 3.9e-11 70.9 55 60.0
Solyc02g092130.2 Solanum lycopersicum HOM05D008250 ORTHO05D010361 1.5e-10 68.9 50 74.0
RcHm_v2.0_Chr2g0108561 Rosa chinensis HOM05D008250 ORTHO05D010361 2.0e-10 68.6 54 57.4
Lj4g0012638 Lotus japonicus HOM05D008250 ORTHO05D010361 3.3e-10 67.8 37 81.1
PGSC0003DMG400021408 Solanum tuberosum HOM05D008250 ORTHO05D010361 3.3e-10 67.8 50 72.0
arahy.Tifrunner.gnm1.ann1.IKZ63P Arachis hypogaea HOM05D008250 ORTHO05D010361 4.4e-10 67.4 34 88.2
arahy.Tifrunner.gnm1.ann1.L5XXFX Arachis hypogaea HOM05D008250 ORTHO05D010361 4.4e-10 67.4 34 88.2
Potri.014G006850 Populus trichocarpa HOM05D008250 ORTHO05D010361 4.4e-10 67.4 43 76.7
Lalb_Chr05g0230301 Lupinus albus HOM05D008250 ORTHO05D010361 7.4e-10 66.6 60 56.7
Psat4g080920 Pisum sativum HOM05D008250 ORTHO05D010361 1.3e-09 65.9 36 77.8
TPR.G3717 Trifolium pratense HOM05D008250 ORTHO05D010361 1.3e-09 65.9 37 75.7
Medtr4g097410 Medicago truncatula HOM05D008250 ORTHO05D010361 2.8e-09 64.7 59 52.5
SEGI_25339 Sequoiadendron giganteum HOM05D008250 ORTHO05D010361 3.7e-09 64.3 56 55.4
A06p32730 Brassica napus HOM05D008250 ORTHO05D010361 1.1e-08 62.8 39 82.1
CDE02G1785 Ceratophyllum demersum HOM05D008250 ORTHO05D010361 1.4e-08 62.4 43 67.4
CsaV3_2G016360 Cucumis sativus L. HOM05D008250 ORTHO05D010361 1.8e-08 62.0 39 79.5
Aa31LG1G16230 Aethionema arabicum HOM05D008250 ORTHO05D010361 2.6e-07 58.2 41 70.7
Os03g0675700 Oryza sativa ssp. japonica HOM05D008250 ORTHO05D010361 7.7e-07 56.6 43 60.5
AagrBONN_evm.TU.Sc2ySwM_362.1884 Anthoceros agrestis HOM05D063975 ORTHO05D010361 2.9e-06 54.7 48 58.3


User provided reference genes

Program Settings