Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G43570 Arabidopsis lyrata HOM05D006600 ORTHO05D008446 4.3e-112 408.3 253 100.0
AT5G65860 Arabidopsis thaliana HOM05D006600 ORTHO05D008446 1.5e-104 383.3 251 87.6
Carub.0008s2674 Capsella rubella HOM05D006600 ORTHO05D008446 1.4e-99 366.7 251 91.6
CARHR279850 Cardamine hirsuta HOM05D006600 ORTHO05D008446 5.5e-99 364.8 257 90.3
Thhalv10005718m.g Eutrema salsugineum HOM05D006600 ORTHO05D008446 2.1e-98 362.8 251 78.9
Sp2g28940 Schrenkiella parvula HOM05D006600 ORTHO05D008446 6.3e-95 351.3 251 88.4
BcaB02g09901 Brassica carinata HOM05D006600 ORTHO05D008446 8.2e-95 350.9 252 69.4
BraA06t26199Z Brassica rapa HOM05D006600 ORTHO05D008446 1.5e-93 346.7 252 68.7
C03p59830 Brassica napus HOM05D006600 ORTHO05D008446 4.5e-93 345.1 252 68.7
BolC3t18247H Brassica oleracea HOM05D006600 ORTHO05D008446 5.9e-93 344.7 251 68.9
A06p32700 Brassica napus HOM05D006600 ORTHO05D008446 7.6e-93 344.4 252 68.3
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 1.6e-87 326.6 251 81.3
THA.LOC104807092 Tarenaya hassleriana HOM05D006600 ORTHO05D008446 6.1e-82 308.1 252 60.3
BcaC01g02829 Brassica carinata HOM05D006600 ORTHO05D008446 7.9e-82 307.8 228 68.4
CsaV3_2G026260 Cucumis sativus L. HOM05D006600 ORTHO05D008446 2.0e-80 303.1 251 76.5
Glyma.04G044500 Glycine max HOM05D006600 ORTHO05D008446 4.4e-80 302.0 248 62.1
TPR.G33718 Trifolium pratense HOM05D006600 ORTHO05D008446 1.7e-79 300.1 243 60.9
ClCG08G016350 Citrullus lanatus HOM05D006600 ORTHO05D008446 4.8e-79 298.5 251 76.5
Potri.014G019000 Populus trichocarpa HOM05D006600 ORTHO05D008446 8.2e-79 297.7 247 78.1
Sabra14G0012400 Salix brachista HOM05D006600 ORTHO05D008446 1.4e-78 297.0 247 59.5
Cc10_g05550 Coffea canephora HOM05D006600 ORTHO05D008446 1.8e-78 296.6 247 78.1
Psat5g038240 Pisum sativum HOM05D006600 ORTHO05D008446 1.8e-78 296.6 243 59.3
COL.COLO4_28541 Corchorus olitorius HOM05D006600 ORTHO05D008446 2.4e-78 296.2 246 60.2
PSO541G2868 Papaver somniferum HOM05D006600 ORTHO05D008446 3.1e-78 295.8 247 69.6
PSO675G8764 Papaver somniferum HOM05D006600 ORTHO05D008446 3.1e-78 295.8 247 60.3
Ah.15g092540 Amaranthus hybridus HOM05D006600 ORTHO05D008446 6.9e-78 294.7 250 57.6
arahy.Tifrunner.gnm1.ann1.H62KW4 Arachis hypogaea HOM05D006600 ORTHO05D008446 9.1e-78 294.3 247 76.9
Medtr3g102800 Medicago truncatula HOM05D006600 ORTHO05D008446 9.1e-78 294.3 243 58.8
PGSC0003DMG400021533 Solanum tuberosum HOM05D006600 ORTHO05D008446 9.1e-78 294.3 251 72.9
arahy.Tifrunner.gnm1.ann1.UTGV4K Arachis hypogaea HOM05D006600 ORTHO05D008446 1.5e-77 293.5 247 76.5
QL12p037547 Quercus lobata HOM05D006600 ORTHO05D008446 1.5e-77 293.5 247 58.3
VMungo1309G2568 Vigna mungo HOM05D006600 ORTHO05D008446 1.5e-77 293.5 246 77.6
Thecc.08G092000 Theobroma cacao HOM05D006600 ORTHO05D008446 2.0e-77 293.1 249 65.5
Phvul.009G070400 Phaseolus vulgaris HOM05D006600 ORTHO05D008446 2.6e-77 292.7 246 77.6
Solyc04g078120.3 Solanum lycopersicum HOM05D006600 ORTHO05D008446 2.6e-77 292.7 251 62.5
Duzib093G2027 Durio zibethinus HOM05D006600 ORTHO05D008446 4.5e-77 292.0 249 57.0
Glyma.06G045000 Glycine max HOM05D006600 ORTHO05D008446 5.9e-77 291.6 246 77.2
Ciclev10001599m.g Citrus clementina HOM05D006600 ORTHO05D008446 7.7e-77 291.2 250 76.0
Sopen04g031730 Solanum pennellii HOM05D006600 ORTHO05D008446 1.3e-76 290.4 251 60.2
Lalb_Chr23g0267431 Lupinus albus HOM05D006600 ORTHO05D008446 1.7e-76 290.0 247 76.5
Lj1g0008642 Lotus japonicus HOM05D006600 ORTHO05D008446 2.2e-76 289.7 248 76.6
Prupe.1G425800 Prunus persica HOM05D006600 ORTHO05D008446 2.9e-76 289.3 247 75.7
AUR62038783 Chenopodium quinoa HOM05D006600 ORTHO05D008446 5.0e-76 288.5 250 56.0
Ca_15912_v3 Cicer arietinum L. HOM05D006600 ORTHO05D008446 5.0e-76 288.5 242 73.6
Gorai.009G217900 Gossypium raimondii HOM05D006600 ORTHO05D008446 5.0e-76 288.5 249 75.9
BcaC01g02830 Brassica carinata HOM05D006600 ORTHO05D008446 6.5e-76 288.1 162 83.3
Nitab4.5_0000934g0020 Nicotiana tabacum HOM05D006600 ORTHO05D008446 6.5e-76 288.1 251 57.4
Sed0004073 Sechium edule HOM05D006600 ORTHO05D008446 6.5e-76 288.1 251 74.9
TWI56G0382 Tripterygium wilfordii HOM05D006600 ORTHO05D008446 6.5e-76 288.1 250 74.0
unitig_62.g23648 Utricularia gibba HOM05D006600 ORTHO05D008446 6.5e-76 288.1 244 57.8
Atru.chr13.803 Acer truncatum HOM05D006600 ORTHO05D008446 1.1e-75 287.3 250 75.6
HanXRQChr10g0304021 Helianthus annuus HOM05D006600 ORTHO05D008446 1.1e-75 287.3 252 58.7
Oeu050861.1 Olea europaea HOM05D006600 ORTHO05D008446 1.1e-75 287.3 247 60.7
Eucgr.F00122 Eucalyptus grandis HOM05D006600 ORTHO05D008446 1.4e-75 287.0 247 76.9
Manes.18G044200 Manihot esculenta HOM05D006600 ORTHO05D008446 1.4e-75 287.0 247 57.5
CDE04G0491 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 1.9e-75 286.6 251 55.8
Dinv44978 Davidia involucrata HOM05D006600 ORTHO05D008446 2.5e-75 286.2 247 76.9
Peaxi162Scf00081g00125 Petunia axillaris HOM05D006600 ORTHO05D008446 2.5e-75 286.2 251 73.3
Rhsim07G0222000 Rhododendron simsii HOM05D006600 ORTHO05D008446 2.5e-75 286.2 247 74.5
Migut.C00501 Erythranthe guttata HOM05D006600 ORTHO05D008446 4.2e-75 285.4 247 74.1
Gohir.A05G207900 Gossypium hirsutum HOM05D006600 ORTHO05D008446 4.2e-75 285.4 249 75.5
PGR083G0558 Punica granatum HOM05D006600 ORTHO05D008446 4.2e-75 285.4 251 75.3
ECA246G2737 Erigeron canadensis HOM05D006600 ORTHO05D008446 5.5e-75 285.0 241 77.2
CSS0036700 Camellia sinensis var. sinensis HOM05D006600 ORTHO05D008446 7.2e-75 284.6 247 75.3
CiPaw.08G048500 Carya illinoinensis HOM05D006600 ORTHO05D008446 7.2e-75 284.6 244 59.0
MELO3C010818.2 Cucumis melo HOM05D006600 ORTHO05D008446 9.4e-75 284.3 251 73.7
Cfa013668 Carpinus fangiana HOM05D006600 ORTHO05D008446 1.2e-74 283.9 247 75.3
Nitab4.5_0003228g0070 Nicotiana tabacum HOM05D006600 ORTHO05D008446 1.2e-74 283.9 251 56.6
Sc26g0004110 Simmondsia chinensis HOM05D006600 ORTHO05D008446 1.2e-74 283.9 249 74.3
DCAR_020080 Daucus carota HOM05D006600 ORTHO05D008446 1.6e-74 283.5 247 74.9
Lsat_1_v5_gn_6_112481 Lactuca sativa HOM05D006600 ORTHO05D008446 2.1e-74 283.1 246 77.6
vmacro04585 Vaccinium macrocarpon HOM05D006600 ORTHO05D008446 2.7e-74 282.7 247 76.5
CANSAT35G1599 Cannabis sativa HOM05D006600 ORTHO05D008446 4.7e-74 282.0 247 75.3
AUR62037454 Chenopodium quinoa HOM05D006600 ORTHO05D008446 4.7e-74 282.0 250 55.6
Gohir.D05G211400 Gossypium hirsutum HOM05D006600 ORTHO05D008446 4.7e-74 282.0 249 74.7
MD08G1088100 Malus domestica HOM05D006600 ORTHO05D008446 4.7e-74 282.0 247 75.3
TAR625G0631 Trochodendron aralioides HOM05D006600 ORTHO05D008446 6.1e-74 281.6 247 74.5
Nn1g04625 Nelumbo nucifera HOM05D006600 ORTHO05D008446 7.9e-74 281.2 247 74.5
SGA_v2.0_scaffold244G44349 Striga asiatica HOM05D006600 ORTHO05D008446 1.0e-73 280.8 247 55.9
Actinidia38095 Actinidia chinensis HOM05D006600 ORTHO05D008446 1.4e-73 280.4 252 74.2
Aqoxy6G02751 Aquilegia oxysepala HOM05D006600 ORTHO05D008446 1.8e-73 280.0 249 75.5
FAN20G2273 Fragaria x ananassa HOM05D006600 ORTHO05D008446 3.0e-73 279.3 250 66.0
MSTRG.1040 Avicennia marina HOM05D006600 ORTHO05D008446 3.9e-73 278.9 253 71.1
MBI16_g13383_MAGBIO Magnolia biondii HOM05D006600 ORTHO05D008446 6.7e-73 278.1 248 56.9
SalBow7G4697 Salvia bowleyana HOM05D006600 ORTHO05D008446 1.5e-72 276.9 249 71.9
FvH4_2g33350 Fragaria vesca HOM05D006600 ORTHO05D008446 3.3e-72 275.8 250 72.8
FAN15G1504 Fragaria x ananassa HOM05D006600 ORTHO05D008446 3.3e-72 275.8 250 73.2
FAN24G1058 Fragaria x ananassa HOM05D006600 ORTHO05D008446 7.4e-72 274.6 250 72.8
Hma1.2p1_0923F.1_g236980 Hydrangea macrophylla HOM05D006600 ORTHO05D008446 4.8e-71 271.9 247 74.5
Hma1.2p1_0923F.1_g236990 Hydrangea macrophylla HOM05D006600 ORTHO05D008446 4.8e-71 271.9 247 74.5
RcHm_v2.0_Chr6g0309231 Rosa chinensis HOM05D006600 ORTHO05D008446 8.2e-71 271.2 246 73.2
Haze_22302 Corylus avellana HOM05D006600 ORTHO05D008446 2.9e-68 262.7 247 69.6
Zm00001eb214310 Zea mays HOM05D006600 ORTHO05D008446 3.8e-68 262.3 247 54.3
ATR0030G048 Amborella trichopoda HOM05D006600 ORTHO05D008446 1.1e-67 260.8 257 69.6
EL10As7g23812 Beta vulgaris HOM05D006600 ORTHO05D008446 1.5e-67 260.4 294 58.8
FAN27G3009 Fragaria x ananassa HOM05D006600 ORTHO05D008446 4.2e-67 258.8 250 70.0
Pp3c17_19880 Physcomitrium patens HOM05D006600 ORTHO05D008446 5.5e-67 258.5 249 70.3
GSVIVG01009372001 Vitis vinifera HOM05D006600 ORTHO05D008446 2.1e-66 256.5 156 75.6
Os03g0761200 Oryza sativa ssp. japonica HOM05D006600 ORTHO05D008446 2.7e-66 256.1 246 53.7
SEGI_28402 Sequoiadendron giganteum HOM05D006600 ORTHO05D008446 2.7e-66 256.1 246 71.1
Cpa.g.sc21.115 Carica papaya HOM05D006600 ORTHO05D008446 2.3e-65 253.1 162 71.6
Lj4A761T87 Lonicera japonica HOM05D006600 ORTHO05D008446 4.0e-65 252.3 156 73.7
CAN.G1054.24 Capsicum annuum HOM05D006600 ORTHO05D008446 5.2e-65 251.9 161 71.4
HPP92_018760 Vanilla planifolia HOM05D006600 ORTHO05D008446 2.0e-64 250.0 248 52.0
SMO228G0045 Selaginella moellendorffii HOM05D006600 ORTHO05D008446 1.0e-60 237.7 249 49.8
Mapoly0063s0069 Marchantia polymorpha HOM05D006600 ORTHO05D008446 1.5e-56 223.8 246 65.0
AagrBONN_evm.TU.Sc2ySwM_228.1907 Anthoceros agrestis HOM05D006600 ORTHO05D008446 2.6e-56 223.0 250 66.0
COL.COLO4_28538 Corchorus olitorius HOM05D006600 ORTHO05D008446 5.4e-54 215.3 259 45.9
TAR624G0301 Trochodendron aralioides HOM05D006600 ORTHO05D008446 8.0e-50 201.4 140 65.7
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 2.0e-45 186.8 124 66.1
TAR374G0485 Trochodendron aralioides HOM05D000474 ORTHO05D003648 1.2e-42 177.6 128 62.5
Cre01.g050050 Chlamydomonas reinhardtii HOM05D006600 ORTHO05D008446 8.9e-41 171.4 302 33.1
MCO09G534 Micromonas commoda HOM05D006600 ORTHO05D008446 1.2e-37 161.0 255 46.3
Actinidia08258 Actinidia chinensis HOM05D006600 ORTHO05D008446 1.5e-35 154.1 96 70.8
CBR_g40512 Chara braunii HOM05D000409 ORTHO05D000184 8.6e-28 128.3 94 62.8
MD15G1072900 Malus domestica HOM05D006600 ORTHO05D008446 1.2e-18 97.8 123 43.1
Oeu040380.1 Olea europaea HOM05D006600 ORTHO05D008446 4.9e-15 85.9 88 53.4
CBR_g40511 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-08 64.3 151 31.8
Dinv39240 Davidia involucrata HOM05D006600 ORTHO05D008446 1.4e-06 57.8 64 46.9
MBI16_g35586_MAGBIO Magnolia biondii HOM05D006600 ORTHO05D001493 1.9e-06 57.4 53 49.1
Actinidia08259 Actinidia chinensis HOM05D006600 ORTHO05D008446 4.2e-06 56.2 43 58.1


User provided reference genes

Program Settings