Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 9.5e-151 537.0 300 100.0
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 6.2e-134 481.1 301 91.0
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 9.0e-133 477.2 301 90.4
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 8.4e-131 470.7 300 89.3
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 6.9e-125 451.1 300 84.7
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 7.6e-116 421.0 276 84.4
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 8.2e-110 401.0 305 78.0
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 8.2e-110 401.0 305 78.0
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 1.5e-108 396.7 303 77.9
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 3.4e-108 395.6 303 77.6
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 4.2e-106 388.7 303 76.6
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 9.3e-106 387.5 271 81.5
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 3.5e-105 385.6 290 76.9
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 2.9e-99 365.9 283 76.0
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 5.0e-99 365.2 276 77.2
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 6.5e-99 364.8 276 77.2
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 7.5e-79 298.1 271 66.1
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 1.2e-55 221.1 283 54.1
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 2.0e-55 220.3 260 57.7
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 2.4e-53 213.4 254 57.5
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 1.2e-52 211.1 201 62.2
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 1.6e-52 210.7 267 54.3
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 3.5e-52 209.5 227 59.5
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 1.3e-51 207.6 264 51.1
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 3.9e-51 206.1 308 47.4
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 6.6e-51 205.3 264 51.9
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 6.6e-51 205.3 261 52.9
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 9.5e-50 201.4 297 48.8
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 1.0e-48 198.0 284 49.6
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 1.4e-48 197.6 229 54.1
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 1.8e-48 197.2 218 56.0
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 2.3e-48 196.8 313 48.2
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 2.3e-48 196.8 272 49.6
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 3.1e-48 196.4 124 91.1
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 5.2e-48 195.7 254 53.1
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 5.2e-48 195.7 298 47.0
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 8.9e-48 194.9 266 50.8
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 1.2e-47 194.5 198 60.1
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 2.0e-47 193.7 227 55.9
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 2.0e-47 193.7 229 52.8
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 2.6e-47 193.4 229 52.8
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 2.6e-47 193.4 222 54.5
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 3.4e-47 193.0 236 53.0
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 3.4e-47 193.0 236 53.0
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 4.4e-47 192.6 222 54.5
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 5.8e-47 192.2 206 56.8
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 9.8e-47 191.4 247 51.4
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 1.3e-46 191.0 167 65.9
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 1.7e-46 190.7 224 54.0
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 2.2e-46 190.3 269 48.7
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 2.2e-46 190.3 275 48.0
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 2.9e-46 189.9 221 54.8
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 3.7e-46 189.5 300 45.3
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 4.9e-46 189.1 288 47.6
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 8.3e-46 188.3 221 52.9
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.1e-45 188.0 265 50.6
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 9.2e-45 184.9 212 55.7
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.2e-44 184.5 220 54.1
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 1.2e-44 184.5 204 56.9
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 1.6e-44 184.1 260 48.5
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 2.0e-44 183.7 236 52.1
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 2.7e-44 183.3 215 56.3
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 2.7e-44 183.3 215 56.3
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 1.0e-43 181.4 235 51.1
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 1.3e-43 181.0 214 55.1
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 1.3e-43 181.0 230 53.5
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 3.9e-43 179.5 195 57.9
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 5.0e-43 179.1 218 53.7
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 6.6e-43 178.7 164 64.0
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 6.6e-43 178.7 184 60.3
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 1.1e-42 177.9 293 44.0
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 2.5e-42 176.8 226 52.7
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 3.3e-42 176.4 284 47.2
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 4.3e-42 176.0 226 51.8
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 5.6e-42 175.6 262 48.1
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 9.5e-42 174.9 295 45.1
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.2e-41 174.5 228 51.3
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 1.6e-41 174.1 207 54.6
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 2.1e-41 173.7 248 48.4
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 2.8e-41 173.3 221 51.1
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 3.6e-41 172.9 243 49.0
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 4.7e-41 172.6 278 47.8
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 4.7e-41 172.6 256 49.2
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 1.1e-40 171.4 218 53.2
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 1.4e-40 171.0 192 56.2
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 5.2e-40 169.1 258 45.7
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 1.2e-39 167.9 295 45.4
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 1.5e-39 167.5 218 51.8
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 1.5e-39 167.5 232 50.0
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 2.0e-39 167.2 193 54.9
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 2.6e-39 166.8 198 52.5
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 3.4e-39 166.4 270 46.3
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 3.4e-39 166.4 248 47.6
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 5.8e-39 165.6 197 55.3
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 2.9e-38 163.3 279 42.7
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 6.4e-38 162.2 154 61.0
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.1e-37 161.4 234 49.6
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.1e-37 161.4 306 40.5
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 1.4e-37 161.0 191 53.9
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 1.4e-37 161.0 281 44.1
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.4e-37 161.0 306 40.5
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 3.2e-37 159.8 165 58.2
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 5.4e-37 159.1 288 43.4
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 7.1e-37 158.7 299 44.1
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 7.1e-37 158.7 182 58.8
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 2.1e-36 157.1 97 92.8
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 4.6e-36 156.0 220 49.5
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 1.0e-35 154.8 116 74.1
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 6.6e-35 152.1 193 51.3
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 1.1e-34 151.4 189 51.3
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 1.5e-34 151.0 308 39.6
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 4.3e-34 149.4 180 55.0
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 9.5e-34 148.3 188 50.0
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 3.6e-33 146.4 260 41.9
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 3.1e-32 143.3 181 48.6
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 4.0e-32 142.9 123 67.5
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 2.6e-31 140.2 277 40.1
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 1.3e-30 137.9 126 63.5
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 2.9e-30 136.7 232 40.5
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 2.4e-29 133.7 184 49.5
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 7.1e-29 132.1 104 68.3
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 2.1e-28 130.6 200 45.0
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 6.0e-28 129.0 106 70.8
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 7.8e-28 128.6 135 59.3
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 7.8e-28 128.6 210 42.4
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 2.3e-27 127.1 126 59.5
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 3.9e-27 126.3 377 34.2
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 3.9e-27 126.3 178 49.4
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 4.0e-24 116.3 134 53.0
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 2.0e-23 114.0 182 43.4
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 2.6e-23 113.6 136 53.7
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 9.3e-21 105.1 94 63.8
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 3.5e-20 103.2 108 53.7
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 2.8e-17 93.6 170 42.4
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 1.4e-16 91.3 119 47.9
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 3.4e-15 86.7 153 37.3
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 9.9e-15 85.1 77 63.6
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 4.9e-14 82.8 137 35.8
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 8.4e-14 82.0 126 40.5
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.4e-13 81.3 60 75.0
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 3.2e-13 80.1 120 42.5
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 1.6e-12 77.8 84 48.8
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 2.1e-12 77.4 84 59.5
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.8e-11 74.3 149 42.3
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.9e-10 70.9 92 53.3
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 3.1e-08 63.5 46 76.1
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 4.0e-08 63.2 45 80.0
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 2.9e-06 57.0 132 34.1


User provided reference genes

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