Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 5.2e-179 630.9 322 100.0
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 1.4e-152 543.1 322 88.8
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 1.9e-136 489.6 323 80.5
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 3.0e-126 455.7 345 75.4
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 9.3e-120 434.1 345 73.0
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 1.8e-118 429.9 327 74.6
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 9.7e-117 424.1 339 71.1
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 2.4e-115 419.5 339 70.5
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 3.8e-113 412.1 336 70.2
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 3.8e-113 412.1 336 70.2
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 3.8e-113 412.1 336 70.2
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 5.5e-112 408.3 343 69.1
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 2.2e-100 369.8 344 63.7
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 1.4e-94 350.5 326 65.6
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 5.7e-93 345.1 329 64.7
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 1.3e-92 344.0 329 64.4
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 1.2e-90 337.4 327 63.3
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 1.6e-90 337.0 327 64.2
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 9.8e-85 317.8 346 56.1
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 4.4e-77 292.4 362 53.9
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 4.9e-76 288.9 295 62.0
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 2.1e-71 273.5 320 55.0
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 1.4e-70 270.8 325 56.3
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 4.1e-67 259.2 330 51.2
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 1.8e-62 243.8 351 48.1
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 1.3e-60 237.7 327 48.9
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 3.7e-60 236.1 336 47.0
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 1.2e-58 231.1 323 47.7
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 1.2e-58 231.1 323 47.7
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 6.0e-58 228.8 323 48.6
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 1.0e-57 228.0 323 48.3
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 2.0e-53 213.8 265 52.5
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 5.2e-46 189.1 351 39.3
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 8.9e-46 188.3 371 38.5
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 4.9e-44 182.6 366 38.8
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 6.4e-44 182.2 366 39.3
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 5.4e-43 179.1 322 41.0
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 7.1e-43 178.7 318 38.1
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 9.2e-43 178.3 367 37.1
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 2.7e-42 176.8 370 39.2
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 2.5e-40 170.2 364 38.2
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 1.8e-38 164.1 379 33.5
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 2.4e-38 163.7 330 38.8
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 6.9e-38 162.2 308 38.0
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 8.9e-38 161.8 347 35.7
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 8.9e-38 161.8 351 36.5
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 1.5e-37 161.0 148 57.4
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 2.6e-37 160.2 308 37.7
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 2.6e-37 160.2 308 37.7
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 9.9e-37 158.3 363 36.9
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 1.7e-36 157.5 389 31.9
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.7e-36 157.5 324 37.0
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.2e-36 157.1 348 35.1
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 4.9e-36 156.0 357 36.1
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 4.9e-36 156.0 351 36.2
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 8.4e-36 155.2 356 35.4
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.4e-35 154.5 348 34.8
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 1.9e-35 154.1 348 35.1
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 5.4e-35 152.5 352 37.2
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 9.3e-35 151.8 359 34.8
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 9.3e-35 151.8 323 35.9
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 1.2e-34 151.4 323 36.8
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 6.0e-34 149.1 349 36.4
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 1.0e-33 148.3 369 33.3
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 1.0e-33 148.3 394 34.3
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 1.3e-33 147.9 365 34.5
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 1.7e-33 147.5 370 33.0
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 3.9e-33 146.4 370 35.1
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 6.6e-33 145.6 296 36.8
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 4.3e-32 142.9 367 32.2
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 9.6e-32 141.7 348 35.3
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 6.2e-31 139.0 146 51.4
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 1.4e-30 137.9 367 32.7
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 1.8e-30 137.5 379 31.7
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 4.0e-30 136.3 258 39.9
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 6.9e-30 135.6 392 32.1
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 9.0e-30 135.2 94 76.6
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 2.0e-29 134.0 334 35.3
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 3.4e-29 133.3 334 35.3
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 5.8e-29 132.5 362 32.6
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 5.8e-29 132.5 161 46.0
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 1.1e-27 128.3 338 32.8
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 1.4e-27 127.9 318 33.6
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 1.9e-27 127.5 377 31.0
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.9e-27 127.5 329 33.7
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 3.2e-27 126.7 320 34.4
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 4.2e-27 126.3 211 37.4
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 5.4e-27 125.9 337 32.0
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 9.3e-27 125.2 296 35.8
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 2.7e-26 123.6 316 32.0
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 1.0e-25 121.7 321 34.0
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 1.0e-25 121.7 111 54.1
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 1.3e-25 121.3 317 33.1
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 1.3e-25 121.3 324 31.8
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 5.1e-25 119.4 310 31.0
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 6.7e-25 119.0 311 32.5
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 8.7e-25 118.6 314 33.8
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 1.5e-24 117.9 310 32.9
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 1.9e-24 117.5 348 33.3
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 1.6e-23 114.4 190 37.9
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 6.2e-23 112.5 141 46.1
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 8.1e-23 112.1 354 28.5
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 1.1e-22 111.7 163 39.3
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 1.1e-22 111.7 315 33.3
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 1.1e-22 111.7 315 33.3
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 1.4e-22 111.3 361 29.6
C03p45450 Brassica napus HOM05D005306 ORTHO05D006158 2.4e-22 110.5 142 47.2
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 3.1e-22 110.2 358 29.3
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 4.0e-22 109.8 300 31.7
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 6.9e-22 109.0 202 38.6
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 1.5e-21 107.8 369 30.6
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 2.6e-21 107.1 186 37.6
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 3.4e-21 106.7 288 35.1
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 4.5e-21 106.3 111 48.6
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 7.6e-21 105.5 213 36.2
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 1.7e-20 104.4 240 33.3
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 4.9e-20 102.8 216 34.7
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 1.4e-19 101.3 109 51.4
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 1.9e-19 100.9 360 27.5
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 3.2e-19 100.1 350 30.6
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 4.2e-19 99.8 247 32.8
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 1.2e-18 98.2 290 31.4
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 4.6e-18 96.3 309 30.7
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 4.6e-18 96.3 325 31.1
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 8.7e-17 92.0 331 31.1
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 3.3e-16 90.1 335 27.8
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 1.3e-15 88.2 303 29.7
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 4.8e-15 86.3 311 31.8
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 1.1e-14 85.1 372 29.3
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 3.1e-14 83.6 91 48.4
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 1.2e-13 81.6 317 28.4
BcaNung06448 Brassica carinata HOM05D005306 ORTHO05D006158 1.9e-11 74.3 188 34.6
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 2.1e-10 70.9 120 36.7
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 4.6e-10 69.7 92 45.7
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 1.3e-09 68.2 101 40.6
Nn5g26847 Nelumbo nucifera HOM05D003400 ORTHO05D003687 5.7e-08 62.8 148 28.4
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 5.7e-08 62.8 248 29.0
BcaC05g28701 Brassica carinata HOM05D005306 ORTHO05D006158 1.3e-07 61.6 74 51.4
MELO3C020148.2 Cucumis melo HOM05D003400 ORTHO05D003687 1.1e-06 58.5 185 28.6
MBI03_g15591_MAGBIO Magnolia biondii HOM05D003400 ORTHO05D003687 1.1e-06 58.5 164 27.4
CsaV3_5G010950 Cucumis sativus L. HOM05D003400 ORTHO05D003687 1.4e-06 58.2 185 28.6
CDE10G0861 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 1.8e-06 57.8 48 56.2
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 3.1e-06 57.0 123 30.9
Nn2g10302 Nelumbo nucifera HOM05D003400 ORTHO05D003687 5.3e-06 56.2 119 31.9
Os02g0132200 Oryza sativa ssp. japonica HOM05D003400 ORTHO05D003687 5.3e-06 56.2 127 29.9
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 5.3e-06 56.2 136 29.4
CDE04G0272 Ceratophyllum demersum HOM05D003400 ORTHO05D003687 6.9e-06 55.8 120 32.5


User provided reference genes

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