Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G42370 Arabidopsis lyrata HOM05D012887 ORTHO05D008511 3.5e-89 331.6 172 100.0
AT5G64880 Arabidopsis thaliana HOM05D012887 ORTHO05D008511 5.6e-79 297.7 173 91.3
CARHR278890 Cardamine hirsuta HOM05D012887 ORTHO05D008511 3.5e-73 278.5 172 87.2
Carub.0008s2571 Capsella rubella HOM05D012887 ORTHO05D008511 4.7e-70 268.1 174 84.5
Sp2g27960 Schrenkiella parvula HOM05D012887 ORTHO05D008511 1.3e-48 196.8 172 62.8
BolC3t18390H Brassica oleracea HOM05D012887 ORTHO05D008511 3.4e-44 182.2 168 63.1
BcaB02g09838 Brassica carinata HOM05D012887 ORTHO05D008511 9.9e-44 180.6 150 70.0
BcaC01g02721 Brassica carinata HOM05D012887 ORTHO05D008511 1.9e-42 176.4 165 62.4
C03p61290 Brassica napus HOM05D012887 ORTHO05D008511 1.9e-42 176.4 165 62.4
BraA06t26102Z Brassica rapa HOM05D012887 ORTHO05D008511 1.9e-31 139.8 166 53.6
A06p31670 Brassica napus HOM05D012887 ORTHO05D008511 4.3e-31 138.7 166 53.0
Aa31LG1G17050 Aethionema arabicum HOM05D012887 ORTHO05D008511 1.4e-29 133.7 173 47.4
THA.LOC104799256 Tarenaya hassleriana HOM05D012887 ORTHO05D008511 8.5e-27 124.4 172 47.7
TWI77G0698 Tripterygium wilfordii HOM05D007384 ORTHO05D008511 2.2e-19 99.8 168 44.0
Dinv42700 Davidia involucrata HOM05D007384 ORTHO05D008511 1.4e-16 90.5 176 36.4
Thecc.01G112100 Theobroma cacao HOM05D007384 ORTHO05D008511 1.8e-16 90.1 179 38.5
CsaV3_2G017570 Cucumis sativus L. HOM05D007384 ORTHO05D008511 2.6e-15 86.3 165 36.4
Dinv19495 Davidia involucrata HOM05D007384 ORTHO05D008511 7.4e-15 84.7 173 37.0
Duzib187G0804 Durio zibethinus HOM05D007384 ORTHO05D008511 1.3e-14 84.0 156 39.1
Glyma.08G141200 Glycine max HOM05D007384 ORTHO05D008511 1.4e-13 80.5 167 35.9
Potri.005G083900 Populus trichocarpa HOM05D007384 ORTHO05D008511 4.1e-13 79.0 178 35.4
Sabra05G0069000 Salix brachista HOM05D007384 ORTHO05D008511 2.6e-12 76.3 179 34.6
Duzib187G1860 Durio zibethinus HOM05D007384 ORTHO05D008511 4.5e-12 75.5 167 36.5
CiPaw.03G134700 Carya illinoinensis HOM05D007384 ORTHO05D008511 2.9e-11 72.8 171 35.1
FAN26G2489 Fragaria x ananassa HOM05D007384 ORTHO05D008511 1.1e-10 70.9 151 35.1
FAN19G0612 Fragaria x ananassa HOM05D007384 ORTHO05D008511 1.9e-10 70.1 148 35.8
FAN23G2853 Fragaria x ananassa HOM05D007384 ORTHO05D008511 1.9e-10 70.1 148 35.8
FvH4_1g22200 Fragaria vesca HOM05D007384 ORTHO05D008511 4.2e-10 68.9 148 35.8
Glyma.05G183400 Glycine max HOM05D007384 ORTHO05D008511 4.2e-10 68.9 171 36.3
Duzib147G1655 Durio zibethinus HOM05D007384 ORTHO05D008511 1.6e-09 67.0 86 39.5
RcHm_v2.0_Chr2g0116341 Rosa chinensis HOM05D007384 ORTHO05D008511 2.1e-09 66.6 156 35.3
Sed0027168 Sechium edule HOM05D007384 ORTHO05D008511 2.7e-09 66.2 166 34.3
Oeu056489.1 Olea europaea HOM05D007384 ORTHO05D008511 3.6e-09 65.9 171 31.0
TWI74G0307 Tripterygium wilfordii HOM05D007384 ORTHO05D008511 4.7e-09 65.5 176 35.2
Potri.007G081700 Populus trichocarpa HOM05D007384 ORTHO05D008511 8.0e-09 64.7 144 34.0
Oeu056487.1 Olea europaea HOM05D007384 ORTHO05D008511 1.4e-08 63.9 161 32.3
VMungo0251G1085 Vigna mungo HOM05D007384 ORTHO05D008511 1.4e-08 63.9 157 36.9
Gohir.A10G086700 Gossypium hirsutum HOM05D007384 ORTHO05D008511 1.8e-08 63.5 170 34.1
CiPaw.04G092400 Carya illinoinensis HOM05D007384 ORTHO05D008511 2.3e-08 63.2 178 33.1
Lsat_1_v5_gn_2_65360 Lactuca sativa HOM05D007384 ORTHO05D008511 2.3e-08 63.2 176 28.4
Manes.13G077680 Manihot esculenta HOM05D007384 ORTHO05D008511 5.2e-08 62.0 157 32.5
CANSAT01G1949 Cannabis sativa HOM05D007384 ORTHO05D008511 1.1e-07 60.8 173 30.1
Gorai.003G046900 Gossypium raimondii HOM05D007384 ORTHO05D008511 1.5e-07 60.5 163 35.0
Eucgr.I00328 Eucalyptus grandis HOM05D007384 ORTHO05D008511 3.3e-07 59.3 71 45.1
Solyc04g053145.1 Solanum lycopersicum HOM05D007384 ORTHO05D008511 5.7e-07 58.5 159 34.0
Lj4g0022190 Lotus japonicus HOM05D007384 ORTHO05D008511 7.4e-07 58.2 160 32.5
Lj4g0025402 Lotus japonicus HOM05D007384 ORTHO05D008511 7.4e-07 58.2 160 32.5
Manes.12G142100 Manihot esculenta HOM05D007384 ORTHO05D008511 9.7e-07 57.8 175 31.4
Peaxi162Scf00323g00037 Petunia axillaris HOM05D007384 ORTHO05D008511 9.7e-07 57.8 164 30.5
Cfa002748 Carpinus fangiana HOM05D007384 ORTHO05D008511 1.3e-06 57.4 190 32.1
Lalb_Chr12g0203551 Lupinus albus HOM05D007384 ORTHO05D008511 1.3e-06 57.4 170 33.5
Hund19659 Selenicereus undatus HOM05D007384 ORTHO05D008511 1.3e-06 57.4 164 30.5
HanXRQChr10g0295241 Helianthus annuus HOM05D007384 ORTHO05D008511 2.2e-06 56.6 174 31.0
Lalb_Chr07g0184821 Lupinus albus HOM05D007384 ORTHO05D008511 2.2e-06 56.6 85 40.0
Lalb_Chr11g0068051 Lupinus albus HOM05D007384 ORTHO05D008511 2.2e-06 56.6 167 32.3
MD01G1019000 Malus domestica HOM05D007384 ORTHO05D008511 2.2e-06 56.6 161 30.4
Sopen04g023570 Solanum pennellii HOM05D007384 ORTHO05D008511 2.2e-06 56.6 159 33.3
arahy.Tifrunner.gnm1.ann1.66AXK3 Arachis hypogaea HOM05D007384 ORTHO05D008511 3.7e-06 55.8 161 29.8
PGSC0003DMG400012958 Solanum tuberosum HOM05D007384 ORTHO05D008511 4.8e-06 55.5 175 32.0
Medtr3g094800 Medicago truncatula HOM05D007384 ORTHO05D008511 6.3e-06 55.1 158 32.3


User provided reference genes

Program Settings