Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G42310 Arabidopsis lyrata HOM05D006130 ORTHO05D007491 5.2e-202 707.6 381 100.0
Carub.0008s2566 Capsella rubella HOM05D006130 ORTHO05D007491 8.3e-168 594.0 381 83.5
Thhalv10004393m.g Eutrema salsugineum HOM05D006130 ORTHO05D007491 1.3e-165 586.6 383 78.9
Sp2g27910 Schrenkiella parvula HOM05D006130 ORTHO05D007491 1.3e-165 586.6 383 82.5
CARHR278840 Cardamine hirsuta HOM05D006130 ORTHO05D007491 1.2e-158 563.5 384 81.8
A06p31630 Brassica napus HOM05D006130 ORTHO05D007491 5.6e-156 554.7 385 81.0
C03p61330 Brassica napus HOM05D006130 ORTHO05D007491 7.6e-153 544.3 384 73.7
BcaB02g09834 Brassica carinata HOM05D006130 ORTHO05D007491 1.6e-150 536.6 383 79.4
BolC3t18393H Brassica oleracea HOM05D006130 ORTHO05D007491 2.7e-150 535.8 382 79.1
BraA06t26099Z Brassica rapa HOM05D006130 ORTHO05D007491 6.0e-150 534.6 379 79.4
BcaC01g02716 Brassica carinata HOM05D006130 ORTHO05D007491 4.2e-143 511.9 371 72.2
THA.LOC104818474 Tarenaya hassleriana HOM05D006130 ORTHO05D007491 1.1e-124 450.7 391 57.5
Aa31LG1G17100 Aethionema arabicum HOM05D006130 ORTHO05D007491 5.3e-122 441.8 366 60.9
AT5G64830 Arabidopsis thaliana HOM05D006130 ORTHO05D007491 9.1e-106 387.9 282 84.8
Cpa.g.sc191.11 Carica papaya HOM05D006130 ORTHO05D007491 2.6e-97 359.8 378 48.9
FAN23G0816 Fragaria x ananassa HOM05D006130 ORTHO05D007491 4.0e-93 345.9 377 47.7
FAN19G1269 Fragaria x ananassa HOM05D006130 ORTHO05D007491 1.2e-92 344.4 377 47.7
QL06p031976 Quercus lobata HOM05D006130 ORTHO05D007491 1.2e-92 344.4 380 47.9
Ciclev10026167m.g Citrus clementina HOM05D006130 ORTHO05D007491 5.7e-92 342.0 376 52.7
Dinv19481 Davidia involucrata HOM05D006130 ORTHO05D007491 1.7e-91 340.5 374 47.3
Haze_25050 Corylus avellana HOM05D006130 ORTHO05D007491 2.8e-91 339.7 389 46.3
Gorai.007G244700 Gossypium raimondii HOM05D006130 ORTHO05D007491 6.3e-91 338.6 385 47.3
Gohir.D11G231600 Gossypium hirsutum HOM05D006130 ORTHO05D007491 1.1e-90 337.8 385 47.3
Thecc.01G113900 Theobroma cacao HOM05D006130 ORTHO05D007491 1.4e-90 337.4 382 47.1
CiPaw.04G091300 Carya illinoinensis HOM05D006130 ORTHO05D007491 3.1e-90 336.3 377 46.4
Dinv42687 Davidia involucrata HOM05D006130 ORTHO05D007491 7.0e-90 335.1 378 46.8
Gohir.A11G197900 Gossypium hirsutum HOM05D006130 ORTHO05D007491 7.0e-90 335.1 386 46.6
MD15G1331600 Malus domestica HOM05D006130 ORTHO05D007491 7.0e-90 335.1 373 48.8
PGR102G0730 Punica granatum HOM05D006130 ORTHO05D007491 7.0e-90 335.1 380 49.5
Duzib264G0573 Durio zibethinus HOM05D006130 ORTHO05D007491 1.6e-89 334.0 382 47.9
RcHm_v2.0_Chr2g0117041 Rosa chinensis HOM05D006130 ORTHO05D007491 7.7e-89 331.6 380 46.6
TWI74G0604 Tripterygium wilfordii HOM05D006130 ORTHO05D007491 1.3e-88 330.9 391 47.6
Manes.12G143200 Manihot esculenta HOM05D006130 ORTHO05D007491 1.7e-88 330.5 380 46.1
Atru.chr4.339 Acer truncatum HOM05D006130 ORTHO05D007491 3.8e-88 329.3 380 47.6
Prupe.6G171600 Prunus persica HOM05D006130 ORTHO05D007491 6.5e-88 328.6 375 47.2
Cfa002758 Carpinus fangiana HOM05D006130 ORTHO05D007491 1.5e-87 327.4 390 45.6
Sabra07G0067600 Salix brachista HOM05D006130 ORTHO05D007491 3.2e-87 326.2 398 45.7
CANSAT80G2857 Cannabis sativa HOM05D006130 ORTHO05D007491 1.6e-86 323.9 379 47.0
Potri.007G080500 Populus trichocarpa HOM05D006130 ORTHO05D007491 1.0e-85 321.2 378 45.8
Sed0017229 Sechium edule HOM05D006130 ORTHO05D007491 1.8e-85 320.5 387 46.0
Rhsim08G0006100 Rhododendron simsii HOM05D006130 ORTHO05D007491 2.3e-85 320.1 374 45.7
MELO3C025043.2 Cucumis melo HOM05D006130 ORTHO05D007491 1.2e-84 317.8 380 45.8
CAN.G347.1 Capsicum annuum HOM05D006130 ORTHO05D007491 2.0e-84 317.0 372 47.3
CsaV3_6G002440 Cucumis sativus L. HOM05D006130 ORTHO05D007491 2.0e-84 317.0 380 45.5
MBI05_g29098_MAGBIO Magnolia biondii HOM05D006130 ORTHO05D007491 2.0e-84 317.0 379 44.1
FAN26G2148 Fragaria x ananassa HOM05D006130 ORTHO05D007491 4.4e-84 315.8 370 44.6
Solyc04g051780.3 Solanum lycopersicum HOM05D006130 ORTHO05D007491 4.4e-84 315.8 374 49.7
ClCG11G005560 Citrullus lanatus HOM05D006130 ORTHO05D007491 9.8e-84 314.7 376 46.3
PGSC0003DMG400031208 Solanum tuberosum HOM05D006130 ORTHO05D007491 1.3e-83 314.3 376 52.7
Sopen04g023130 Solanum pennellii HOM05D006130 ORTHO05D007491 1.1e-82 311.2 371 51.8
Lj2C566T4 Lonicera japonica HOM05D006130 ORTHO05D007491 3.1e-82 309.7 374 44.7
Duzib147G1554 Durio zibethinus HOM05D006130 ORTHO05D007491 7.0e-82 308.5 350 48.6
Cc07_g16320 Coffea canephora HOM05D006130 ORTHO05D007491 1.2e-81 307.8 376 44.4
Eucgr.H04843 Eucalyptus grandis HOM05D006130 ORTHO05D007491 1.2e-81 307.8 386 43.8
Nitab4.5_0004840g0040 Nicotiana tabacum HOM05D006130 ORTHO05D007491 4.5e-81 305.8 372 48.7
TPR.G23729 Trifolium pratense HOM05D006130 ORTHO05D007491 5.9e-81 305.4 383 47.3
Lalb_Chr11g0068091 Lupinus albus HOM05D006130 ORTHO05D007491 1.0e-80 304.7 388 43.3
Nn5g28889 Nelumbo nucifera HOM05D006130 ORTHO05D007491 1.3e-80 304.3 387 43.9
Nitab4.5_0015691g0010 Nicotiana tabacum HOM05D006130 ORTHO05D007491 1.3e-80 304.3 376 47.3
Oeu028522.1 Olea europaea HOM05D006130 ORTHO05D007491 8.6e-80 301.6 376 43.6
EL10Ac6g14758 Beta vulgaris HOM05D006130 ORTHO05D007491 7.2e-79 298.5 387 41.9
GSVIVG01022236001 Vitis vinifera HOM05D006130 ORTHO05D007491 1.6e-78 297.4 383 43.1
Peaxi162Scf00106g00208 Petunia axillaris HOM05D006130 ORTHO05D007491 3.6e-78 296.2 369 46.6
PSO170G1695 Papaver somniferum HOM05D006130 ORTHO05D007491 1.8e-77 293.9 377 42.4
ECA238G3253 Erigeron canadensis HOM05D006130 ORTHO05D007491 4.0e-77 292.7 369 43.4
AUR62016283 Chenopodium quinoa HOM05D006130 ORTHO05D007491 6.8e-77 292.0 382 44.2
Ca_16897_v3 Cicer arietinum L. HOM05D006130 ORTHO05D007491 8.9e-77 291.6 386 46.4
MSTRG.15753 Avicennia marina HOM05D006130 ORTHO05D007491 1.2e-76 291.2 371 42.6
Aqoxy7G04042 Aquilegia oxysepala HOM05D006130 ORTHO05D007491 5.7e-76 288.9 384 41.7
DCAR_001374 Daucus carota HOM05D006130 ORTHO05D007491 1.7e-75 287.3 412 37.9
PSO210G3121 Papaver somniferum HOM05D006130 ORTHO05D007491 6.3e-75 285.4 377 39.8
Psat5g066000 Pisum sativum HOM05D006130 ORTHO05D007491 6.3e-75 285.4 385 44.7
Lj1g0022742 Lotus japonicus HOM05D006130 ORTHO05D007491 8.3e-75 285.0 385 48.3
Glyma.04G218800 Glycine max HOM05D006130 ORTHO05D007491 1.8e-74 283.9 380 42.1
AUR62003302 Chenopodium quinoa HOM05D006130 ORTHO05D007491 4.1e-74 282.7 386 43.0
vmacro18637 Vaccinium macrocarpon HOM05D006130 ORTHO05D007491 7.0e-74 282.0 353 46.2
Medtr3g095020 Medicago truncatula HOM05D006130 ORTHO05D007491 1.2e-73 281.2 379 44.6
HPP92_016462 Vanilla planifolia HOM05D006130 ORTHO05D007491 3.5e-73 279.6 382 40.3
Eucgr.H04852 Eucalyptus grandis HOM05D006130 ORTHO05D007491 4.5e-73 279.3 382 41.4
HPP92_027147 Vanilla planifolia HOM05D006130 ORTHO05D007491 7.8e-73 278.5 375 41.1
Phvul.009G139000 Phaseolus vulgaris HOM05D006130 ORTHO05D007491 1.3e-72 277.7 386 42.0
arahy.Tifrunner.gnm1.ann1.JIC903 Arachis hypogaea HOM05D006130 ORTHO05D007491 3.9e-72 276.2 382 42.7
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 6.6e-72 275.4 372 41.9
Lsat_1_v5_gn_2_67140 Lactuca sativa HOM05D006130 ORTHO05D007491 8.6e-72 275.0 371 43.1
Migut.L00069 Erythranthe guttata HOM05D006130 ORTHO05D007491 1.1e-71 274.6 376 42.6
VMungo1309G1738 Vigna mungo HOM05D006130 ORTHO05D007491 4.3e-71 272.7 354 45.2
HanXRQChr14g0445741 Helianthus annuus HOM05D006130 ORTHO05D007491 9.5e-71 271.6 364 41.8
ATR0665G503 Amborella trichopoda HOM05D006130 ORTHO05D007491 4.7e-70 269.2 383 39.2
arahy.Tifrunner.gnm1.ann1.S5QZ0Z Arachis hypogaea HOM05D006130 ORTHO05D007491 4.7e-70 269.2 387 42.1
SalBow5G2487 Salvia bowleyana HOM05D006130 ORTHO05D007491 4.0e-69 266.2 374 41.4
SEGI_25559 Sequoiadendron giganteum HOM05D006130 ORTHO05D007491 6.8e-69 265.4 395 39.0
CDE09G1360 Ceratophyllum demersum HOM05D006130 ORTHO05D007491 2.0e-68 263.8 376 40.2
Hund03536 Selenicereus undatus HOM05D006130 ORTHO05D007491 1.7e-67 260.8 389 39.8
Eucgr.H04859 Eucalyptus grandis HOM05D006130 ORTHO05D007491 2.2e-67 260.4 382 39.0
SGA_v2.0_scaffold47G17703 Striga asiatica HOM05D006130 ORTHO05D007491 4.9e-67 259.2 385 41.8
FvH4_1g22740 Fragaria vesca HOM05D006130 ORTHO05D007491 1.1e-66 258.1 318 44.3
Eucgr.H04856 Eucalyptus grandis HOM05D006130 ORTHO05D007491 4.6e-65 252.7 383 39.7
SMO358G0378 Selaginella moellendorffii HOM05D006130 ORTHO05D007491 7.8e-65 251.9 396 36.6
Os04g0640800 Oryza sativa ssp. japonica HOM05D006130 ORTHO05D007491 2.3e-64 250.4 384 39.6
Zm00001eb431860 Zea mays HOM05D006130 ORTHO05D007491 3.0e-64 250.0 378 40.2
Eucgr.H04846 Eucalyptus grandis HOM05D006130 ORTHO05D007491 3.5e-57 226.5 347 39.5
GSVIVG01022231001 Vitis vinifera HOM05D006130 ORTHO05D007491 4.6e-57 226.1 371 37.7
Mapoly0014s0114 Marchantia polymorpha HOM05D006130 ORTHO05D007491 8.6e-56 221.9 407 34.2
unitig_62.g23431 Utricularia gibba HOM05D006130 ORTHO05D007491 1.5e-55 221.1 373 38.9
Pp3c16_16240 Physcomitrium patens HOM05D006130 ORTHO05D007491 1.6e-54 217.6 411 33.3
Ah.14g080600 Amaranthus hybridus HOM05D006130 ORTHO05D007491 2.1e-54 217.2 354 40.1
Hma1.2p1_0375F.1_g138770 Hydrangea macrophylla HOM05D006130 ORTHO05D007491 1.1e-53 214.9 313 41.5
COL.COLO4_11003 Corchorus olitorius HOM05D006130 ORTHO05D007491 3.1e-53 213.4 378 35.4
TAR628G0645 Trochodendron aralioides HOM05D006130 ORTHO05D007491 1.5e-52 211.1 284 43.0
Ah.03g141370 Amaranthus hybridus HOM05D006130 ORTHO05D007491 4.9e-51 206.1 295 44.4
Actinidia12211 Actinidia chinensis HOM05D006130 ORTHO05D007491 6.4e-51 205.7 265 43.8
Eucgr.H04861 Eucalyptus grandis HOM05D006130 ORTHO05D007491 2.1e-49 200.7 189 53.4
Sc03g0004370 Simmondsia chinensis HOM05D006130 ORTHO05D007491 5.1e-48 196.1 277 43.3
CSS0050489 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.3e-47 192.2 181 55.8
Glyma.06G147000 Glycine max HOM05D006130 ORTHO05D007491 2.8e-46 190.3 180 53.9
CBR_g30690 Chara braunii HOM05D006130 ORTHO05D007491 7.1e-42 175.6 481 29.5
AagrBONN_evm.TU.Sc2ySwM_228.1847 Anthoceros agrestis HOM05D006130 ORTHO05D007491 5.8e-28 129.4 137 43.8
SGA_v2.0_scaffold34G13625 Striga asiatica HOM05D006130 ORTHO05D007491 1.4e-21 108.2 87 57.5
MCO11G927 Micromonas commoda HOM05D006130 ORTHO05D007491 1.2e-20 105.1 446 27.1
AagrBONN_evm.TU.Sc2ySwM_228.1848 Anthoceros agrestis HOM05D006130 ORTHO05D007491 1.4e-18 98.2 85 51.8
Actinidia35264 Actinidia chinensis HOM05D006130 ORTHO05D007491 2.3e-16 90.9 80 57.5
Cre14.g608500 Chlamydomonas reinhardtii HOM05D006130 ORTHO05D007491 2.0e-12 77.8 122 33.6
SGA_v2.0_scaffold32G12965 Striga asiatica HOM05D006130 ORTHO05D007491 5.8e-12 76.3 80 52.5
PSO782G1813 Papaver somniferum HOM05D005189 ORTHO05D006093 1.0e-11 75.5 354 26.0
MBI19_g05150_MAGBIO Magnolia biondii HOM05D005189 ORTHO05D006093 2.2e-11 74.3 376 24.5
Aqoxy2G02861 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 2.9e-11 73.9 352 23.9
Sed0013075 Sechium edule HOM05D005189 ORTHO05D006093 5.0e-11 73.2 354 23.7
QL06p006883 Quercus lobata HOM05D005189 ORTHO05D006093 6.5e-11 72.8 375 25.9
Aa31LG5G1890 Aethionema arabicum HOM05D005189 ORTHO05D006093 1.1e-10 72.0 360 24.4
RcHm_v2.0_Chr5g0024021 Rosa chinensis HOM05D005189 ORTHO05D006093 3.2e-10 70.5 100 36.0
FAN16G0469 Fragaria x ananassa HOM05D005189 ORTHO05D006093 4.2e-10 70.1 360 23.6
PSO765G0055 Papaver somniferum HOM05D005189 ORTHO05D006093 5.5e-10 69.7 356 25.6
Aqoxy22s002 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 1.6e-09 68.2 167 29.9
FAN11G2688 Fragaria x ananassa HOM05D005189 ORTHO05D006093 1.6e-09 68.2 114 35.1
AT4G02220 Arabidopsis thaliana HOM05D005189 ORTHO05D006093 2.1e-09 67.8 360 24.2
PGR044G0984 Punica granatum HOM05D005189 ORTHO05D006093 2.1e-09 67.8 369 23.3
PGR047G0002 Punica granatum HOM05D005189 ORTHO05D006093 2.1e-09 67.8 369 23.3
AL6G50910 Arabidopsis lyrata HOM05D005189 ORTHO05D006093 3.5e-09 67.0 360 23.9
FvH4_3g14570 Fragaria vesca HOM05D005189 ORTHO05D006093 3.5e-09 67.0 378 24.1
Sp6g02120 Schrenkiella parvula HOM05D005189 ORTHO05D006093 3.5e-09 67.0 118 34.7
FAN21G1757 Fragaria x ananassa HOM05D005189 ORTHO05D006093 4.6e-09 66.6 344 23.5
DCAR_006919 Daucus carota HOM05D005189 ORTHO05D006093 6.1e-09 66.2 362 23.2
unitig_22.g5230 Utricularia gibba HOM05D005189 ORTHO05D006093 6.1e-09 66.2 374 25.1
CiPaw.01G112900 Carya illinoinensis HOM05D005189 ORTHO05D006093 7.9e-09 65.9 352 24.1
DCAR_005781 Daucus carota HOM05D005189 ORTHO05D006093 7.9e-09 65.9 362 23.2
MELO3C015632.2 Cucumis melo HOM05D005189 ORTHO05D006093 1.0e-08 65.5 375 22.7
SalBow6G1077 Salvia bowleyana HOM05D005189 ORTHO05D006093 1.0e-08 65.5 361 22.7
ClCG03G014110 Citrullus lanatus HOM05D005189 ORTHO05D006093 1.3e-08 65.1 373 22.5
ATR0665G541 Amborella trichopoda HOM05D005189 ORTHO05D006093 1.8e-08 64.7 359 21.4
CBR_g22284 Chara braunii HOM05D005189 ORTHO05D006093 1.8e-08 64.7 103 34.0
Manes.03G058600 Manihot esculenta HOM05D005189 ORTHO05D006093 1.8e-08 64.7 356 23.3
Potri.002G201200 Populus trichocarpa HOM05D005189 ORTHO05D006093 1.8e-08 64.7 367 22.9
HanXRQChr04g0111211 Helianthus annuus HOM05D005189 ORTHO05D006093 3.0e-08 63.9 130 31.5
Manes.05G000401 Manihot esculenta HOM05D005189 ORTHO05D006093 3.0e-08 63.9 356 23.3
Migut.D00121 Erythranthe guttata HOM05D005189 ORTHO05D006093 3.9e-08 63.5 347 22.8
SEGI_10631 Sequoiadendron giganteum HOM05D005189 ORTHO05D006093 3.9e-08 63.5 359 22.0
CSS0046497 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 5.1e-08 63.2 356 22.2
Thhalv10028689m.g Eutrema salsugineum HOM05D005189 ORTHO05D006093 5.1e-08 63.2 345 24.1
Pp3c22_7380 Physcomitrium patens HOM05D005189 ORTHO05D006093 5.1e-08 63.2 377 22.5
TWI23G0603 Tripterygium wilfordii HOM05D005189 ORTHO05D006093 5.1e-08 63.2 380 21.8
Actinidia25825 Actinidia chinensis HOM05D005189 ORTHO05D006093 6.7e-08 62.8 348 21.0
CsaV3_1G042140 Cucumis sativus L. HOM05D005189 ORTHO05D006093 8.7e-08 62.4 374 21.4
CARHR250440 Cardamine hirsuta HOM05D005189 ORTHO05D006093 1.5e-07 61.6 360 23.3
MSTRG.13027 Avicennia marina HOM05D005189 ORTHO05D006093 1.9e-07 61.2 348 21.3
HanXRQChr04g0114701 Helianthus annuus HOM05D005189 ORTHO05D006093 1.9e-07 61.2 118 31.4
TAR365G0047 Trochodendron aralioides HOM05D005189 ORTHO05D006093 1.9e-07 61.2 356 23.6
Eucgr.D00338 Eucalyptus grandis HOM05D005189 ORTHO05D006093 2.5e-07 60.8 118 30.5
Oeu008336.1 Olea europaea HOM05D005189 ORTHO05D006093 3.3e-07 60.5 362 22.4
BcaB01g02068 Brassica carinata HOM05D005189 ORTHO05D006093 5.7e-07 59.7 355 24.5
Cc01_g21150 Coffea canephora HOM05D005189 ORTHO05D006093 9.7e-07 58.9 374 22.5
Rhsim01G0287800 Rhododendron simsii HOM05D005189 ORTHO05D006093 9.7e-07 58.9 328 22.3
SGA_v2.0_scaffold334G49031 Striga asiatica HOM05D000141 ORTHO05D000780 9.7e-07 58.9 359 23.1
Lj5C676G0 Lonicera japonica HOM05D005189 ORTHO05D006093 1.3e-06 58.5 182 25.8
Sabra02G0157700 Salix brachista HOM05D005189 ORTHO05D006093 1.3e-06 58.5 101 30.7
CSS0031632 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 1.6e-06 58.2 348 22.1
COL.COLO4_33288 Corchorus olitorius HOM05D005189 ORTHO05D006093 1.6e-06 58.2 115 31.3
HanXRQChr08g0218711 Helianthus annuus HOM05D006130 ORTHO05D007491 1.6e-06 58.2 49 49.0
GSVIVG01028059001 Vitis vinifera HOM05D005189 ORTHO05D006093 1.6e-06 58.2 345 24.1
Atru.chr5.1082 Acer truncatum HOM05D005189 ORTHO05D006093 2.8e-06 57.4 368 21.7
Dinv10045 Davidia involucrata HOM05D003197 ORTHO05D006093 2.8e-06 57.4 361 23.5
Carub.0006s3494 Capsella rubella HOM05D005189 ORTHO05D006093 3.7e-06 57.0 360 23.1
Duzib128G0399 Durio zibethinus HOM05D005189 ORTHO05D006093 4.8e-06 56.6 348 23.0
Cpa.g.sc151.36 Carica papaya HOM05D005189 ORTHO05D006093 6.3e-06 56.2 380 21.1
Dinv33081 Davidia involucrata HOM05D005189 ORTHO05D006093 6.3e-06 56.2 355 21.4
PRCOL_00001898 Prasinoderma coloniale HOM05D006130 ORTHO05D007491 6.3e-06 56.2 135 33.3


User provided reference genes

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