Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G42100 Arabidopsis lyrata HOM05D005900 ORTHO05D007306 3.9e-103 378.3 205 100.0
AT5G64680 Arabidopsis thaliana HOM05D005900 ORTHO05D007306 3.9e-71 271.9 172 82.0
Sp2g27740 Schrenkiella parvula HOM05D005900 ORTHO05D007306 6.9e-52 208.0 215 59.1
Aa31LG1G17260 Aethionema arabicum HOM05D005900 ORTHO05D007306 8.5e-50 201.1 211 57.8
Thhalv10004934m.g Eutrema salsugineum HOM05D005900 ORTHO05D007306 1.4e-44 183.7 202 56.9
C03p61480 Brassica napus HOM05D005900 ORTHO05D007306 3.4e-43 179.1 214 55.1
Carub.0008s2548 Capsella rubella HOM05D005900 ORTHO05D007306 3.4e-43 179.1 180 56.1
C02p63500 Brassica napus HOM05D005900 ORTHO05D007306 9.4e-41 171.0 206 53.9
BcaB07g29751 Brassica carinata HOM05D005900 ORTHO05D007306 1.6e-40 170.2 211 53.1
BcaC03g18270 Brassica carinata HOM05D005900 ORTHO05D007306 2.1e-40 169.9 206 53.4
A02p43400 Brassica napus HOM05D005900 ORTHO05D007306 2.7e-40 169.5 206 53.9
BraA02t09265Z Brassica rapa HOM05D005900 ORTHO05D007306 6.1e-40 168.3 206 53.4
BolC2t12415H Brassica oleracea HOM05D005900 ORTHO05D007306 3.9e-39 165.6 207 52.7
THA.LOC104799437 Tarenaya hassleriana HOM05D005900 ORTHO05D007306 1.7e-34 150.2 215 46.0
BcaB04g19984 Brassica carinata HOM05D005900 ORTHO05D007306 8.5e-34 147.9 169 52.1
CARHR278660 Cardamine hirsuta HOM05D005900 ORTHO05D007306 1.3e-29 134.0 214 46.7
BcaC08g46818 Brassica carinata HOM05D005900 ORTHO05D007306 2.8e-29 132.9 142 52.8
BolC6t39862H Brassica oleracea HOM05D005900 ORTHO05D007306 2.8e-29 132.9 142 52.8
Cpa.g.sc36.199 Carica papaya HOM05D005900 ORTHO05D007306 2.2e-26 123.2 235 41.7
BcaC01g02700 Brassica carinata HOM05D005900 ORTHO05D007306 9.1e-20 101.3 217 41.5
PGSC0003DMG400008953 Solanum tuberosum HOM05D005900 ORTHO05D007306 2.0e-19 100.1 214 38.3
Gorai.002G021100 Gossypium raimondii HOM05D005900 ORTHO05D007306 7.7e-19 98.2 219 38.4
QL03p048972 Quercus lobata HOM05D005900 ORTHO05D007306 1.3e-18 97.4 221 37.6
Dinv35828 Davidia involucrata HOM05D005900 ORTHO05D007306 2.9e-18 96.3 225 36.0
Solyc09g009850.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 2.9e-18 96.3 204 38.2
CsaV3_4G033440 Cucumis sativus L. HOM05D005900 ORTHO05D007306 5.0e-18 95.5 235 34.9
Eucgr.E01503 Eucalyptus grandis HOM05D005900 ORTHO05D007306 6.5e-18 95.1 154 41.6
Gohir.D01G018900 Gossypium hirsutum HOM05D005900 ORTHO05D007306 8.6e-18 94.7 219 37.9
TWI36G0396 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 8.6e-18 94.7 195 37.9
Sopen09g004610 Solanum pennellii HOM05D005900 ORTHO05D007306 1.1e-17 94.4 206 37.9
CANSAT80G1963 Cannabis sativa HOM05D005900 ORTHO05D007306 1.9e-17 93.6 222 36.0
Ca_23210_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 3.2e-17 92.8 205 34.1
Nitab4.5_0000191g0220 Nicotiana tabacum HOM05D005900 ORTHO05D007306 3.2e-17 92.8 220 34.5
Ca_13888_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 7.2e-17 91.7 205 34.6
CiPaw.03G184600 Carya illinoinensis HOM05D005900 ORTHO05D007306 1.2e-16 90.9 168 39.3
CANSAT80G1771 Cannabis sativa HOM05D005900 ORTHO05D007306 1.6e-16 90.5 222 35.1
AUR62006518 Chenopodium quinoa HOM05D005900 ORTHO05D007306 2.8e-16 89.7 218 34.4
Dinv16498 Davidia involucrata HOM05D005900 ORTHO05D007306 2.8e-16 89.7 203 36.9
Oeu055297.1 Olea europaea HOM05D005900 ORTHO05D007306 3.6e-16 89.4 225 35.1
PGSC0003DMG400022718 Solanum tuberosum HOM05D005900 ORTHO05D007306 3.6e-16 89.4 209 36.8
DCAR_030841 Daucus carota HOM05D005900 ORTHO05D007306 4.7e-16 89.0 207 35.7
Eucgr.B02910 Eucalyptus grandis HOM05D005900 ORTHO05D007306 4.7e-16 89.0 244 35.2
Nitab4.5_0000059g0460 Nicotiana tabacum HOM05D005900 ORTHO05D007306 4.7e-16 89.0 220 33.6
Solyc01g008760.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 4.7e-16 89.0 211 35.5
MSTRG.22403 Avicennia marina HOM05D005900 ORTHO05D007306 6.1e-16 88.6 225 33.3
Atru.chr12.1436 Acer truncatum HOM05D005900 ORTHO05D007306 1.4e-15 87.4 229 36.2
Sabra01G0047700 Salix brachista HOM05D005900 ORTHO05D007306 1.8e-15 87.0 223 35.0
CSS0005312 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 3.0e-15 86.3 209 35.9
Potri.001G068500 Populus trichocarpa HOM05D005900 ORTHO05D007306 3.0e-15 86.3 223 34.5
COL.COLO4_27171 Corchorus olitorius HOM05D005900 ORTHO05D007306 4.0e-15 85.9 234 35.5
CiPaw.05G100400 Carya illinoinensis HOM05D005900 ORTHO05D007306 5.2e-15 85.5 192 37.5
AUR62025013 Chenopodium quinoa HOM05D005900 ORTHO05D007306 6.8e-15 85.1 219 33.8
Thecc.02G191100 Theobroma cacao HOM05D005900 ORTHO05D007306 6.8e-15 85.1 236 37.3
Migut.C01115 Erythranthe guttata HOM05D005900 ORTHO05D007306 8.8e-15 84.7 209 33.5
Peaxi162Scf00698g00117 Petunia axillaris HOM05D005900 ORTHO05D007306 1.2e-14 84.3 215 33.0
Hund20854 Selenicereus undatus HOM05D005900 ORTHO05D007306 1.2e-14 84.3 220 32.7
RcHm_v2.0_Chr4g0428761 Rosa chinensis HOM05D005900 ORTHO05D007306 2.0e-14 83.6 234 34.6
SalBow2G0170 Salvia bowleyana HOM05D005900 ORTHO05D007306 2.6e-14 83.2 197 31.0
CDE09G0879 Ceratophyllum demersum HOM05D005900 ORTHO05D007306 3.4e-14 82.8 219 34.2
Medtr8g012410 Medicago truncatula HOM05D005900 ORTHO05D007306 3.4e-14 82.8 205 33.2
Os08g0422600 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 5.7e-14 82.0 199 33.7
Sc06g0007790 Simmondsia chinensis HOM05D005900 ORTHO05D007306 5.7e-14 82.0 213 34.3
FvH4_4g22530 Fragaria vesca HOM05D005900 ORTHO05D007306 7.5e-14 81.6 223 35.9
FAN12G4206 Fragaria x ananassa HOM05D005900 ORTHO05D007306 7.5e-14 81.6 223 35.9
Gohir.A01G020300 Gossypium hirsutum HOM05D005900 ORTHO05D007306 7.5e-14 81.6 219 35.2
TAR371G1211 Trochodendron aralioides HOM05D005900 ORTHO05D007306 7.5e-14 81.6 244 34.0
FAN07G0479 Fragaria x ananassa HOM05D005900 ORTHO05D007306 1.3e-13 80.9 223 34.5
GSVIVG01001102001 Vitis vinifera HOM05D005900 ORTHO05D007306 1.3e-13 80.9 213 33.3
EL10Ac1g01696 Beta vulgaris HOM05D005900 ORTHO05D007306 1.7e-13 80.5 214 33.2
Ciclev10005823m.g Citrus clementina HOM05D005900 ORTHO05D007306 1.7e-13 80.5 217 37.3
Os01g0259900 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 2.2e-13 80.1 209 32.1
Prupe.1G213900 Prunus persica HOM05D005900 ORTHO05D007306 2.2e-13 80.1 206 31.6
Sed0015511 Sechium edule HOM05D005900 ORTHO05D007306 2.2e-13 80.1 233 32.6
MBI11_g07033_MAGBIO Magnolia biondii HOM05D005900 ORTHO05D007306 6.3e-13 78.6 205 33.2
SGA_v2.0_scaffold28G11983 Striga asiatica HOM05D005900 ORTHO05D007306 6.3e-13 78.6 218 31.2
Cc04_g15880 Coffea canephora HOM05D005900 ORTHO05D007306 8.3e-13 78.2 197 33.0
Migut.C00405 Erythranthe guttata HOM05D005900 ORTHO05D007306 8.3e-13 78.2 212 34.0
FAN17G1441 Fragaria x ananassa HOM05D005900 ORTHO05D007306 1.4e-12 77.4 163 34.4
Lalb_Chr15g0079851 Lupinus albus HOM05D005900 ORTHO05D007306 1.8e-12 77.0 223 32.3
Hma1.2p1_1494F.1_g286930 Hydrangea macrophylla HOM05D005900 ORTHO05D007306 2.4e-12 76.6 235 33.2
Psat4g204640 Pisum sativum HOM05D005900 ORTHO05D007306 4.1e-12 75.9 197 32.5
TAR629G1598 Trochodendron aralioides HOM05D005900 ORTHO05D007306 5.4e-12 75.5 221 30.8
Haze_24259 Corylus avellana HOM05D005900 ORTHO05D007306 7.0e-12 75.1 228 34.2
arahy.Tifrunner.gnm1.ann1.UQH0GN Arachis hypogaea HOM05D005900 ORTHO05D007306 9.2e-12 74.7 214 32.2
SGA_v2.0_scaffold154G37193 Striga asiatica HOM05D005900 ORTHO05D007306 9.2e-12 74.7 221 29.0
TWI18G0365 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 1.6e-11 73.9 187 34.2
Cfa010215 Carpinus fangiana HOM05D005900 ORTHO05D007306 2.0e-11 73.6 226 35.4
MD16G1142000 Malus domestica HOM05D005900 ORTHO05D007306 2.7e-11 73.2 148 35.8
PSO017G3279 Papaver somniferum HOM05D005900 ORTHO05D007306 5.9e-11 72.0 197 31.5
PSO170G6181 Papaver somniferum HOM05D005900 ORTHO05D007306 1.0e-10 71.2 197 31.5
ClCG11G017800 Citrullus lanatus HOM05D005900 ORTHO05D007306 1.7e-10 70.5 233 28.8
MD13G1131700 Malus domestica HOM05D005900 ORTHO05D007306 1.7e-10 70.5 148 35.1
arahy.Tifrunner.gnm1.ann1.5NZU5R Arachis hypogaea HOM05D005900 ORTHO05D007306 2.3e-10 70.1 213 31.5
PGR102G3094 Punica granatum HOM05D005900 ORTHO05D007306 2.3e-10 70.1 228 33.3
Cfa011664 Carpinus fangiana HOM05D005900 ORTHO05D007306 2.9e-10 69.7 229 32.3
Lj3g0021746 Lotus japonicus HOM05D005900 ORTHO05D007306 3.8e-10 69.3 222 33.3
Lsat_1_v5_gn_2_95001 Lactuca sativa HOM05D005900 ORTHO05D007306 5.0e-10 68.9 216 30.6
ECA238G4295 Erigeron canadensis HOM05D005900 ORTHO05D007306 1.1e-09 67.8 183 32.8
vmacro15379 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 1.1e-09 67.8 233 31.8
Zm00001eb127900 Zea mays HOM05D005900 ORTHO05D007306 1.5e-09 67.4 196 32.7
Peaxi162Scf00079g01513 Petunia axillaris HOM05D005900 ORTHO05D007306 1.9e-09 67.0 241 32.4
Oeu001539.2 Olea europaea HOM05D005900 ORTHO05D007306 3.3e-09 66.2 271 27.7
VMungo0331G1117 Vigna mungo HOM05D005900 ORTHO05D007306 5.6e-09 65.5 211 29.4
Rhsim12G0016500 Rhododendron simsii HOM05D005900 ORTHO05D007306 7.3e-09 65.1 208 32.7
Aqoxy4G02969 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 4.7e-08 62.4 185 29.2
TPR.G16445 Trifolium pratense HOM05D005900 ORTHO05D007306 1.0e-07 61.2 204 30.9
Glyma.07G200400 Glycine max HOM05D005900 ORTHO05D007306 1.4e-07 60.8 215 33.5
Glyma.13G175800 Glycine max HOM05D005900 ORTHO05D007306 8.9e-07 58.2 211 30.3
BolC3t18409H Brassica oleracea HOM05D005900 ORTHO05D007306 3.4e-06 56.2 51 51.0


User provided reference genes

Program Settings