Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G41570 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 8.0e-191 670.2 333 100.0
AL8G41600 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 2.3e-190 668.7 333 99.7
AT5G64250 Arabidopsis thaliana HOM05D004164 ORTHO05D004891 3.8e-185 651.4 332 96.7
Sp2g27310 Schrenkiella parvula HOM05D004164 ORTHO05D004891 4.9e-180 634.4 331 93.4
Carub.0008s2504 Capsella rubella HOM05D004164 ORTHO05D004891 1.1e-179 633.3 331 94.3
CARHR278160 Cardamine hirsuta HOM05D004164 ORTHO05D004891 4.1e-179 631.3 328 93.6
A06p30940 Brassica napus HOM05D004164 ORTHO05D004891 7.8e-178 627.1 329 92.7
BraA06t26033Z Brassica rapa HOM05D004164 ORTHO05D004891 7.8e-178 627.1 329 92.7
BcaB02g09775 Brassica carinata HOM05D004164 ORTHO05D004891 5.0e-177 624.4 331 91.8
Thhalv10004559m.g Eutrema salsugineum HOM05D004164 ORTHO05D004891 5.0e-177 624.4 331 93.4
BcaC01g02680 Brassica carinata HOM05D004164 ORTHO05D004891 1.9e-176 622.5 331 91.5
BolC3t18463H Brassica oleracea HOM05D004164 ORTHO05D004891 1.9e-176 622.5 331 91.5
C03p62030 Brassica napus HOM05D004164 ORTHO05D004891 1.6e-175 619.4 331 91.2
Aa31LG1G17650 Aethionema arabicum HOM05D004164 ORTHO05D004891 8.3e-172 607.1 330 88.8
THA.LOC104799917 Tarenaya hassleriana HOM05D004164 ORTHO05D004891 1.1e-158 563.5 329 80.9
CSS0040430 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 1.3e-156 556.6 327 82.6
CSS0002795 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 1.7e-156 556.2 327 82.6
Gorai.008G016000 Gossypium raimondii HOM05D004164 ORTHO05D004891 1.4e-155 553.1 327 81.0
Duzib132G1201 Durio zibethinus HOM05D004164 ORTHO05D004891 1.9e-155 552.7 332 80.1
Gohir.D12G015900 Gossypium hirsutum HOM05D004164 ORTHO05D004891 5.4e-155 551.2 327 80.4
Thecc.02G135100 Theobroma cacao HOM05D004164 ORTHO05D004891 5.4e-155 551.2 324 82.1
Gohir.A12G015600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 2.1e-154 549.3 327 80.4
PGR042G3604 Punica granatum HOM05D004164 ORTHO05D004891 1.7e-153 546.2 328 79.0
QL11p022503 Quercus lobata HOM05D004164 ORTHO05D004891 3.0e-153 545.4 327 79.8
CANSAT11G1236 Cannabis sativa HOM05D004164 ORTHO05D004891 3.9e-153 545.0 327 80.1
Cfa005671 Carpinus fangiana HOM05D004164 ORTHO05D004891 1.1e-152 543.5 329 80.5
Hma1.2p1_0784F.1_g217100 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 1.5e-152 543.1 327 80.7
arahy.Tifrunner.gnm1.ann1.XH6BES Arachis hypogaea HOM05D004164 ORTHO05D004891 5.6e-152 541.2 327 79.2
Eucgr.G00847 Eucalyptus grandis HOM05D004164 ORTHO05D004891 1.6e-151 539.7 326 77.6
Atru.chr6.1169 Acer truncatum HOM05D004164 ORTHO05D004891 2.1e-151 539.3 327 78.9
Actinidia24002 Actinidia chinensis HOM05D004164 ORTHO05D004891 2.1e-151 539.3 327 80.4
Dinv24178 Davidia involucrata HOM05D004164 ORTHO05D004891 6.2e-151 537.7 327 80.1
Manes.07G033800 Manihot esculenta HOM05D004164 ORTHO05D004891 6.2e-151 537.7 328 79.3
Ciclev10028812m.g Citrus clementina HOM05D004164 ORTHO05D004891 1.1e-150 537.0 327 78.3
TPR.G10321 Trifolium pratense HOM05D004164 ORTHO05D004891 1.1e-150 537.0 326 78.2
GSVIVG01015759001 Vitis vinifera HOM05D004164 ORTHO05D004891 1.4e-150 536.6 326 79.8
Hund00072 Selenicereus undatus HOM05D004164 ORTHO05D004891 1.8e-150 536.2 329 79.0
Potri.017G051800 Populus trichocarpa HOM05D004164 ORTHO05D004891 6.9e-150 534.3 326 79.1
AUR62013150 Chenopodium quinoa HOM05D004164 ORTHO05D004891 9.0e-150 533.9 342 76.9
Lalb_Chr20g0122971 Lupinus albus HOM05D004164 ORTHO05D004891 1.5e-149 533.1 327 78.6
Medtr3g069190 Medicago truncatula HOM05D004164 ORTHO05D004891 1.5e-149 533.1 326 78.8
vmacro01837 Vaccinium macrocarpon HOM05D004164 ORTHO05D004891 1.5e-149 533.1 326 79.1
CiPaw.05G034200 Carya illinoinensis HOM05D004164 ORTHO05D004891 3.4e-149 531.9 326 78.5
Ah.01g022180 Amaranthus hybridus HOM05D004164 ORTHO05D004891 4.4e-149 531.6 328 77.7
RcHm_v2.0_Chr6g0271551 Rosa chinensis HOM05D004164 ORTHO05D004891 5.8e-149 531.2 326 79.1
TWI14G1169 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 5.8e-149 531.2 328 79.3
Sabra17G0043400 Salix brachista HOM05D004164 ORTHO05D004891 1.3e-148 530.0 326 77.9
SabraUnG0002700 Salix brachista HOM05D004164 ORTHO05D004891 1.3e-148 530.0 326 77.9
Prupe.8G064000 Prunus persica HOM05D004164 ORTHO05D004891 1.7e-148 529.6 327 78.3
MELO3C018623.2 Cucumis melo HOM05D004164 ORTHO05D004891 2.9e-148 528.9 321 78.2
HanXRQChr10g0291731 Helianthus annuus HOM05D004164 ORTHO05D004891 2.9e-148 528.9 329 76.3
Ca_16502_v3 Cicer arietinum L. HOM05D004164 ORTHO05D004891 4.9e-148 528.1 324 78.7
DCAR_001777 Daucus carota HOM05D004164 ORTHO05D004891 4.9e-148 528.1 330 77.9
PGSC0003DMG400012550 Solanum tuberosum HOM05D004164 ORTHO05D004891 8.4e-148 527.3 326 77.9
Sed0011830 Sechium edule HOM05D004164 ORTHO05D004891 1.1e-147 526.9 327 76.1
Lj5A235T51 Lonicera japonica HOM05D004164 ORTHO05D004891 1.4e-147 526.6 326 77.6
MSTRG.20292 Avicennia marina HOM05D004164 ORTHO05D004891 2.4e-147 525.8 328 78.0
Solyc01g105370.4 Solanum lycopersicum HOM05D004164 ORTHO05D004891 3.2e-147 525.4 327 77.4
Lsat_1_v5_gn_5_108141 Lactuca sativa HOM05D004164 ORTHO05D004891 5.4e-147 524.6 328 76.2
Sopen01g047880 Solanum pennellii HOM05D004164 ORTHO05D004891 5.4e-147 524.6 326 77.6
Peaxi162Scf01060g00013 Petunia axillaris HOM05D004164 ORTHO05D004891 7.1e-147 524.2 328 77.1
Glyma.08G178100 Glycine max HOM05D004164 ORTHO05D004891 1.6e-146 523.1 326 77.3
Psat5g128640 Pisum sativum HOM05D004164 ORTHO05D004891 1.6e-146 523.1 324 77.8
Sc08g0003530 Simmondsia chinensis HOM05D004164 ORTHO05D004891 2.1e-146 522.7 326 78.5
TAR381G0722 Trochodendron aralioides HOM05D004164 ORTHO05D004891 2.1e-146 522.7 329 77.2
FAN18G3873 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.0e-145 520.4 328 76.2
PSO210G2683 Papaver somniferum HOM05D004164 ORTHO05D004891 1.0e-145 520.4 326 76.7
CAN.G523.53 Capsicum annuum HOM05D004164 ORTHO05D004891 1.3e-145 520.0 326 76.7
ClCG09G015620 Citrullus lanatus HOM05D004164 ORTHO05D004891 1.3e-145 520.0 327 75.8
CsaV3_7G006720 Cucumis sativus L. HOM05D004164 ORTHO05D004891 1.7e-145 519.6 312 78.5
Aqoxy6G02071 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 2.3e-145 519.2 330 75.8
Cc02_g21290 Coffea canephora HOM05D004164 ORTHO05D004891 3.0e-145 518.8 326 75.2
TWI59G0238 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 3.0e-145 518.8 328 78.0
Nitab4.5_0000863g0200 Nicotiana tabacum HOM05D004164 ORTHO05D004891 3.9e-145 518.5 326 76.7
Oeu007975.1 Olea europaea HOM05D004164 ORTHO05D004891 1.1e-144 516.9 399 66.9
VMungo0540G2402 Vigna mungo HOM05D004164 ORTHO05D004891 1.9e-144 516.2 327 76.1
Phvul.006G205400 Phaseolus vulgaris HOM05D004164 ORTHO05D004891 9.6e-144 513.8 324 76.5
ECA234G4615 Erigeron canadensis HOM05D004164 ORTHO05D004891 1.6e-143 513.1 327 74.6
MD05G1043200 Malus domestica HOM05D004164 ORTHO05D004891 2.1e-143 512.7 328 75.9
Migut.B00589 Erythranthe guttata HOM05D004164 ORTHO05D004891 2.8e-143 512.3 327 76.5
RcHm_v2.0_Chr6g0271711 Rosa chinensis HOM05D004164 ORTHO05D004891 6.2e-143 511.1 327 77.1
Rhsim11G0139400 Rhododendron simsii HOM05D004164 ORTHO05D004891 4.0e-142 508.4 322 77.3
arahy.Tifrunner.gnm1.ann1.IF3X13 Arachis hypogaea HOM05D004164 ORTHO05D004891 1.5e-141 506.5 327 75.2
Lj6g0000010 Lotus japonicus HOM05D004164 ORTHO05D004891 9.9e-141 503.8 328 73.2
Gohir.A04G114200 Gossypium hirsutum HOM05D004164 ORTHO05D004891 2.2e-140 502.7 332 72.9
Lj4g0000280 Lotus japonicus HOM05D004164 ORTHO05D004891 2.9e-140 502.3 322 73.9
SalBow5G1609 Salvia bowleyana HOM05D004164 ORTHO05D004891 9.3e-139 497.3 357 69.7
SalBow5G4318 Salvia bowleyana HOM05D004164 ORTHO05D004891 9.3e-139 497.3 357 70.0
Cpa.g.sc42.29 Carica papaya HOM05D004164 ORTHO05D004891 1.8e-137 493.0 348 69.8
ATR0782G002 Amborella trichopoda HOM05D004164 ORTHO05D004891 6.2e-135 484.6 315 73.7
Gorai.012G142600 Gossypium raimondii HOM05D004164 ORTHO05D004891 6.2e-135 484.6 327 71.9
Zm00001eb033580 Zea mays HOM05D004164 ORTHO05D004891 4.0e-134 481.9 328 70.4
EL10Ac9g21504 Beta vulgaris HOM05D004164 ORTHO05D004891 2.1e-130 469.5 326 71.2
Gohir.D04G155600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 1.5e-125 453.4 327 67.9
FvH4_5g07040 Fragaria vesca HOM05D004164 ORTHO05D004891 1.2e-122 443.7 286 74.8
Pp3c2_200 Physcomitrium patens HOM05D004164 ORTHO05D004891 8.5e-116 421.0 329 61.7
AUR62010154 Chenopodium quinoa HOM05D004164 ORTHO05D004891 4.2e-115 418.7 342 65.2
HPP92_004281 Vanilla planifolia HOM05D004164 ORTHO05D004891 2.3e-113 412.9 327 63.9
SGA_v2.0_scaffold83G26314 Striga asiatica HOM05D004164 ORTHO05D004891 3.0e-113 412.5 350 61.4
MBI02_g02171_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 1.7e-111 406.8 287 70.7
SMO143G0159 Selaginella moellendorffii HOM05D004164 ORTHO05D004891 2.2e-111 406.4 324 61.4
Os08g0485400 Oryza sativa ssp. japonica HOM05D004164 ORTHO05D004891 4.5e-109 398.7 267 69.7
AagrBONN_evm.TU.Sc2ySwM_228.2787 Anthoceros agrestis HOM05D004164 ORTHO05D004891 1.0e-108 397.5 330 59.4
Mapoly0043s0005 Marchantia polymorpha HOM05D004164 ORTHO05D004891 1.0e-105 387.5 331 60.4
TAR365G1146 Trochodendron aralioides HOM05D004164 ORTHO05D004891 3.3e-104 382.5 324 58.3
Nn3g21861 Nelumbo nucifera HOM05D004164 ORTHO05D004891 9.1e-102 374.4 324 57.4
Lj6g0021052 Lotus japonicus HOM05D004164 ORTHO05D004891 9.4e-99 364.4 222 76.1
Nn4g25427 Nelumbo nucifera HOM05D004164 ORTHO05D004891 2.1e-98 363.2 326 56.1
PSO832G0925 Papaver somniferum HOM05D004164 ORTHO05D004891 2.1e-98 363.2 322 56.5
PSO063G3797 Papaver somniferum HOM05D004164 ORTHO05D004891 3.9e-97 359.0 322 53.7
PSO782G1386 Papaver somniferum HOM05D004164 ORTHO05D004891 3.9e-97 359.0 323 55.7
FAN15G1714 Fragaria x ananassa HOM05D004164 ORTHO05D004891 5.2e-97 358.6 220 77.3
PSO832G1962 Papaver somniferum HOM05D004164 ORTHO05D004891 4.4e-96 355.5 326 56.1
PSO173G0010 Papaver somniferum HOM05D004164 ORTHO05D004891 5.7e-96 355.1 331 52.6
Aqoxy2G03733 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 1.3e-95 354.0 329 54.7
PSO210G6256 Papaver somniferum HOM05D004164 ORTHO05D004891 3.1e-94 349.4 329 53.5
PSO507G0030 Papaver somniferum HOM05D004164 ORTHO05D004891 2.0e-93 346.7 327 54.4
PSO210G5660 Papaver somniferum HOM05D004164 ORTHO05D004891 1.1e-91 340.9 324 52.5
Prupe.8G063800 Prunus persica HOM05D004164 ORTHO05D004891 1.5e-91 340.5 220 76.8
PSO832G4194 Papaver somniferum HOM05D004164 ORTHO05D004891 4.2e-91 339.0 324 53.4
PSO832G2156 Papaver somniferum HOM05D004164 ORTHO05D004891 9.4e-91 337.8 326 52.1
PSO761G0590 Papaver somniferum HOM05D004164 ORTHO05D004891 2.1e-90 336.7 324 51.9
PSO507G0017 Papaver somniferum HOM05D004164 ORTHO05D004891 8.0e-90 334.7 326 54.0
MBI18_g40410_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 1.5e-88 330.5 324 53.7
Haze_10597 Corylus avellana HOM05D004164 ORTHO05D004891 1.1e-83 314.3 230 69.1
PSO761G0549 Papaver somniferum HOM05D004164 ORTHO05D004891 1.6e-82 310.5 323 49.8
PSO781G0333 Papaver somniferum HOM05D004164 ORTHO05D004891 1.8e-81 307.0 322 48.8
MBI18_g36466_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 8.8e-81 304.7 329 48.3
PSO761G0410 Papaver somniferum HOM05D004164 ORTHO05D004891 1.1e-78 297.7 329 48.0
PSO173G0166 Papaver somniferum HOM05D004164 ORTHO05D004891 1.2e-74 284.3 258 53.5
PSO507G0015 Papaver somniferum HOM05D004164 ORTHO05D004891 7.5e-64 248.4 215 56.3
Nitab4.5_0002401g0010 Nicotiana tabacum HOM05D004164 ORTHO05D004891 7.0e-62 241.9 145 78.6
Actinidia26597 Actinidia chinensis HOM05D004164 ORTHO05D004891 5.6e-59 232.3 148 77.7
FAN24G1884 Fragaria x ananassa HOM05D004164 ORTHO05D004891 7.5e-56 221.9 180 65.6
TPR.G9891 Trifolium pratense HOM05D004164 ORTHO05D004891 7.5e-56 221.9 173 67.6
FvH4_2g11900 Fragaria vesca HOM05D004164 ORTHO05D004891 1.7e-55 220.7 140 75.7
MD05G1043700 Malus domestica HOM05D004164 ORTHO05D004891 3.6e-50 203.0 215 53.5
Nn2g14913 Nelumbo nucifera HOM05D004164 ORTHO05D004891 3.1e-49 199.9 321 38.9
PSO541G2216 Papaver somniferum HOM05D004164 ORTHO05D004891 7.6e-48 195.3 194 49.5
PSO646G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 7.6e-48 195.3 175 53.1
TPR.G11284 Trifolium pratense HOM05D004164 ORTHO05D004891 4.9e-47 192.6 129 70.5
FAN24G2526 Fragaria x ananassa HOM05D004164 ORTHO05D004891 6.6e-44 182.2 113 76.1
FvH4_2g11890 Fragaria vesca HOM05D004164 ORTHO05D004891 1.5e-43 181.0 136 66.9
TPR.G19821 Trifolium pratense HOM05D004164 ORTHO05D004891 1.1e-38 164.9 158 53.8
Pp3s30_626 Physcomitrium patens HOM05D004164 ORTHO05D004891 9.6e-35 151.8 365 32.6
PRCOL_00000119 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 1.3e-31 141.4 348 32.5
Cfa026765 Carpinus fangiana HOM05D004164 ORTHO05D004891 2.7e-29 133.7 350 30.0
Prupe.8G063900 Prunus persica HOM05D004164 ORTHO05D004891 2.8e-26 123.6 79 70.9
Cfa023826 Carpinus fangiana HOM05D004164 ORTHO05D004891 1.4e-25 121.3 304 31.2
PSO400G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 5.3e-25 119.4 98 54.1
MD10G1050600 Malus domestica HOM05D004164 ORTHO05D004891 2.6e-24 117.1 286 30.4
TPR.G10092 Trifolium pratense HOM05D004164 ORTHO05D004891 8.4e-23 112.1 67 70.1
COL.COLO4_01173 Corchorus olitorius HOM05D004164 ORTHO05D004891 1.3e-18 98.2 255 32.2
MCO10G397 Micromonas commoda HOM05D004164 ORTHO05D004891 8.1e-18 95.5 330 29.4
CSS0002492 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 1.4e-17 94.7 60 80.0
Cfa026889 Carpinus fangiana HOM05D004164 ORTHO05D004891 3.1e-17 93.6 349 27.2
Hma1.2p1_0784F.1_g217070 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 1.2e-16 91.7 74 64.9
Nn5g30063 Nelumbo nucifera HOM05D004164 ORTHO05D004891 2.2e-15 87.4 57 77.2
MBI02_g02172_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 2.7e-13 80.5 42 85.7
MBI18_g38521_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 2.3e-12 77.4 143 36.4
TAR019G0004 Trochodendron aralioides HOM05D004164 ORTHO05D004891 2.5e-11 73.9 51 70.6
Zm00001eb051650 Zea mays HOM05D004164 ORTHO05D004891 1.3e-10 71.6 48 68.8
TAR622G0536 Trochodendron aralioides HOM05D004164 ORTHO05D000005 2.8e-10 70.5 65 53.8
SGA_v2.0_scaffold72G24132 Striga asiatica HOM05D004164 ORTHO05D004891 3.1e-09 67.0 44 70.5
PRCOL_00002754 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 6.9e-09 65.9 118 38.1
SGA_v2.0_scaffold47G17582 Striga asiatica HOM05D004164 ORTHO05D004891 1.0e-07 62.0 47 63.8
SGA_v2.0_scaffold48G17919 Striga asiatica HOM05D004164 ORTHO05D004891 1.3e-07 61.6 43 69.8


User provided reference genes

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