Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G41430 Arabidopsis lyrata HOM05D005104 ORTHO05D006614 3.9e-120 434.9 227 100.0
AT5G64160 Arabidopsis thaliana HOM05D005104 ORTHO05D006614 3.0e-112 408.7 228 94.7
Carub.0008s2495 Capsella rubella HOM05D005104 ORTHO05D006614 8.9e-109 397.1 229 91.3
Sp2g27220 Schrenkiella parvula HOM05D005104 ORTHO05D006614 1.3e-104 383.3 228 88.6
CARHR278070 Cardamine hirsuta HOM05D005104 ORTHO05D006614 3.3e-103 378.6 228 88.6
Thhalv10004872m.g Eutrema salsugineum HOM05D005104 ORTHO05D006614 9.6e-103 377.1 228 88.2
A06p30880 Brassica napus HOM05D005104 ORTHO05D006614 2.3e-96 355.9 228 85.5
BcaB07g29727 Brassica carinata HOM05D005104 ORTHO05D006614 1.5e-95 353.2 231 85.3
BcaB02g09781 Brassica carinata HOM05D005104 ORTHO05D006614 7.3e-95 350.9 228 83.8
BolC3t18470H Brassica oleracea HOM05D005104 ORTHO05D006614 2.8e-94 349.0 228 83.8
C03p62090 Brassica napus HOM05D005104 ORTHO05D006614 3.6e-94 348.6 228 83.8
BcaC01g02673 Brassica carinata HOM05D005104 ORTHO05D006614 8.1e-94 347.4 228 83.8
Aa31LG1G17770 Aethionema arabicum HOM05D005104 ORTHO05D006614 4.9e-91 338.2 248 76.2
BcaC02g09479 Brassica carinata HOM05D002012 ORTHO05D001992 1.2e-89 333.6 216 83.8
BolC9t58698H Brassica oleracea HOM05D005104 ORTHO05D006614 5.1e-88 328.2 223 80.7
C06p26800 Brassica napus HOM05D005104 ORTHO05D006614 3.3e-87 325.5 223 81.2
C09p58340 Brassica napus HOM05D005104 ORTHO05D006614 4.3e-87 325.1 218 80.7
BolC6t37855H Brassica oleracea HOM05D005104 ORTHO05D006614 3.6e-86 322.0 223 80.3
C09p58390 Brassica napus HOM05D005104 ORTHO05D006614 1.8e-85 319.7 217 80.2
BcaC08g45071 Brassica carinata HOM05D005104 ORTHO05D006614 2.4e-85 319.3 223 79.8
BraA03t13815Z Brassica rapa HOM05D005104 ORTHO05D006614 2.7e-81 305.8 222 77.5
C02p46090 Brassica napus HOM05D005104 ORTHO05D006614 3.5e-81 305.4 223 78.0
Duzib248G0158 Durio zibethinus HOM05D005104 ORTHO05D006614 4.3e-63 245.4 252 58.7
Manes.14G166400 Manihot esculenta HOM05D005104 ORTHO05D006614 4.3e-63 245.4 248 60.1
PGR142G2776 Punica granatum HOM05D005104 ORTHO05D006614 9.7e-63 244.2 243 58.4
Gohir.D04G154400 Gossypium hirsutum HOM05D005104 ORTHO05D006614 3.1e-61 239.2 252 57.1
Gorai.012G141700 Gossypium raimondii HOM05D005104 ORTHO05D006614 3.1e-61 239.2 252 57.1
VMungo0251G0802 Vigna mungo HOM05D005104 ORTHO05D006614 6.9e-61 238.0 249 57.4
Gohir.A04G113100 Gossypium hirsutum HOM05D005104 ORTHO05D006614 2.6e-60 236.1 254 55.9
Phvul.002G208000 Phaseolus vulgaris HOM05D005104 ORTHO05D006614 2.6e-60 236.1 246 58.5
Medtr4g094252 Medicago truncatula HOM05D005104 ORTHO05D006614 5.9e-60 235.0 247 57.9
Eucgr.I02668 Eucalyptus grandis HOM05D005104 ORTHO05D006614 7.7e-60 234.6 242 59.9
Dinv24198 Davidia involucrata HOM05D005104 ORTHO05D006614 1.1e-58 230.7 255 56.1
Psat7g098720 Pisum sativum HOM05D005104 ORTHO05D006614 1.1e-58 230.7 247 57.9
Thecc.02G140100 Theobroma cacao HOM05D005104 ORTHO05D006614 2.5e-58 229.6 254 56.7
arahy.Tifrunner.gnm1.ann1.V9NXIE Arachis hypogaea HOM05D005104 ORTHO05D006614 7.2e-58 228.0 248 54.8
arahy.Tifrunner.gnm1.ann1.PH7E5N Arachis hypogaea HOM05D005104 ORTHO05D006614 1.2e-57 227.3 250 55.6
TWI59G0245 Tripterygium wilfordii HOM05D005104 ORTHO05D006614 2.1e-57 226.5 246 57.3
COL.COLO4_20953 Corchorus olitorius HOM05D005104 ORTHO05D006614 6.1e-57 224.9 252 56.3
Gohir.A04G112960 Gossypium hirsutum HOM05D005104 ORTHO05D006614 7.9e-57 224.6 205 61.0
Actinidia28058 Actinidia chinensis HOM05D005104 ORTHO05D006614 1.8e-56 223.4 250 54.8
Atru.chr6.1109 Acer truncatum HOM05D005104 ORTHO05D006614 3.0e-56 222.6 241 57.7
Atru.chr6.1089 Acer truncatum HOM05D005104 ORTHO05D006614 3.9e-56 222.2 242 57.4
GSVIVG01003083001 Vitis vinifera HOM05D005104 ORTHO05D006614 1.1e-55 220.7 254 54.3
CsaV3_7G006430 Cucumis sativus L. HOM05D005104 ORTHO05D006614 3.3e-55 219.2 256 52.7
Glyma.05G118400 Glycine max HOM05D005104 ORTHO05D006614 4.3e-55 218.8 247 56.7
MELO3C018651.2 Cucumis melo HOM05D005104 ORTHO05D006614 9.7e-55 217.6 247 53.4
Glyma.08G073500 Glycine max HOM05D005104 ORTHO05D006614 9.7e-55 217.6 257 54.9
CiPaw.05G036500 Carya illinoinensis HOM05D005104 ORTHO05D006614 2.8e-54 216.1 250 54.8
Lalb_Chr10g0097741 Lupinus albus HOM05D005104 ORTHO05D006614 2.8e-54 216.1 248 54.0
TPR.G10460 Trifolium pratense HOM05D005104 ORTHO05D006614 2.8e-54 216.1 195 64.6
TAR628G1132 Trochodendron aralioides HOM05D005104 ORTHO05D006614 2.8e-54 216.1 246 54.1
Prupe.8G062400 Prunus persica HOM05D005104 ORTHO05D006614 3.7e-54 215.7 245 55.5
SalBow6G6298 Salvia bowleyana HOM05D005104 ORTHO05D006614 3.7e-54 215.7 249 55.4
Lj4g0020611 Lotus japonicus HOM05D005104 ORTHO05D006614 4.8e-54 215.3 248 54.0
Cpa.g.sc42.74 Carica papaya HOM05D005104 ORTHO05D006614 6.3e-54 214.9 253 53.8
SalBow6G6009 Salvia bowleyana HOM05D005104 ORTHO05D006614 6.3e-54 214.9 249 56.2
CSS0037720 Camellia sinensis var. sinensis HOM05D005104 ORTHO05D006614 1.4e-53 213.8 250 52.8
Ciclev10029197m.g Citrus clementina HOM05D005104 ORTHO05D006614 1.4e-53 213.8 235 54.5
FAN27G3119 Fragaria x ananassa HOM05D005104 ORTHO05D006614 2.4e-53 213.0 239 55.6
Migut.N01063 Erythranthe guttata HOM05D005104 ORTHO05D006614 3.1e-53 212.6 233 53.2
Hma1.2p1_0522F.1_g171600 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 3.1e-53 212.6 198 58.1
Oeu007957.1 Olea europaea HOM05D005104 ORTHO05D006614 4.1e-53 212.2 246 53.7
MSTRG.27791 Avicennia marina HOM05D005104 ORTHO05D006614 9.1e-53 211.1 240 51.7
CANSAT11G2657 Cannabis sativa HOM05D005104 ORTHO05D006614 1.2e-52 210.7 263 50.2
MD10G1051500 Malus domestica HOM05D005104 ORTHO05D006614 2.0e-52 209.9 247 54.3
DCAR_001791 Daucus carota HOM05D005104 ORTHO05D006614 3.4e-52 209.1 249 53.0
Ca_18345_v3 Cicer arietinum L. HOM05D005104 ORTHO05D006614 1.7e-51 206.8 268 51.9
HanXRQChr10g0295831 Helianthus annuus HOM05D005104 ORTHO05D006614 1.7e-51 206.8 248 52.0
RcHm_v2.0_Chr6g0273461 Rosa chinensis HOM05D005104 ORTHO05D006614 2.2e-51 206.5 240 53.8
CDE10G0587 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 3.8e-51 205.7 243 51.9
Haze_10684 Corylus avellana HOM05D005104 ORTHO05D006614 5.0e-51 205.3 243 53.5
FvH4_2g12710 Fragaria vesca HOM05D005104 ORTHO05D006614 1.4e-50 203.8 240 53.8
Sed0008592 Sechium edule HOM05D005104 ORTHO05D006614 1.4e-50 203.8 246 50.8
ClCG09G015340 Citrullus lanatus HOM05D005104 ORTHO05D006614 4.2e-50 202.2 269 48.3
QL11p020542 Quercus lobata HOM05D005104 ORTHO05D006614 9.4e-50 201.1 276 49.3
THA.LOC104818435 Tarenaya hassleriana HOM05D005104 ORTHO05D006614 2.1e-49 199.9 165 71.5
SGA_v2.0_scaffold45G17311 Striga asiatica HOM05D005104 ORTHO05D006614 2.7e-49 199.5 248 48.8
Cfa005608 Carpinus fangiana HOM05D005104 ORTHO05D006614 3.6e-49 199.1 247 51.8
HPP92_006000 Vanilla planifolia HOM05D005104 ORTHO05D006614 4.7e-49 198.7 246 50.8
FAN20G1981 Fragaria x ananassa HOM05D005104 ORTHO05D006614 6.1e-49 198.4 241 53.5
PSO541G4381 Papaver somniferum HOM05D005104 ORTHO05D006614 6.1e-49 198.4 255 49.0
PSO781G0266 Papaver somniferum HOM05D005104 ORTHO05D006614 1.4e-48 197.2 255 49.8
Rhsim05G0108500 Rhododendron simsii HOM05D005104 ORTHO05D006614 2.0e-47 193.4 211 53.6
Potri.003G023601 Populus trichocarpa HOM05D005104 ORTHO05D006614 3.3e-47 192.6 258 49.2
SEGI_35517 Sequoiadendron giganteum HOM05D005104 ORTHO05D006614 4.4e-47 192.2 251 50.2
Lsat_1_v5_gn_5_107140 Lactuca sativa HOM05D005104 ORTHO05D006614 1.3e-46 190.7 240 48.8
Aqoxy6G00597 Aquilegia oxysepala HOM05D005104 ORTHO05D006614 1.7e-46 190.3 260 50.4
Nn1g05321 Nelumbo nucifera HOM05D005104 ORTHO05D006614 1.7e-46 190.3 249 50.6
vmacro19925 Vaccinium macrocarpon HOM05D005104 ORTHO05D006614 2.8e-46 189.5 290 45.9
ECA234G0341 Erigeron canadensis HOM05D005104 ORTHO05D006614 8.2e-46 188.0 187 54.5
Hund06391 Selenicereus undatus HOM05D005104 ORTHO05D006614 8.2e-46 188.0 235 52.3
PGSC0003DMG400017693 Solanum tuberosum HOM05D005104 ORTHO05D006614 8.2e-46 188.0 242 49.2
ATR0564G397 Amborella trichopoda HOM05D005104 ORTHO05D006614 1.4e-45 187.2 243 51.4
Sopen10g017460 Solanum pennellii HOM05D005104 ORTHO05D006614 2.4e-45 186.4 241 48.1
Oeu026158.1 Olea europaea HOM05D005104 ORTHO05D006614 4.1e-45 185.7 243 49.0
Solyc10g047220.2 Solanum lycopersicum HOM05D005104 ORTHO05D006614 1.0e-43 181.0 241 47.3
Peaxi162Scf00003g03543 Petunia axillaris HOM05D005104 ORTHO05D006614 1.3e-43 180.6 244 50.4
Sabra01G0157800 Salix brachista HOM05D005104 ORTHO05D006614 1.1e-42 177.6 273 48.4
Cc02_g21630 Coffea canephora HOM05D005104 ORTHO05D006614 4.2e-42 175.6 243 50.2
Os02g0753200 Oryza sativa ssp. japonica HOM05D005104 ORTHO05D006614 1.2e-41 174.1 256 48.4
Lj5A240T40 Lonicera japonica HOM05D005104 ORTHO05D006614 3.6e-41 172.6 136 68.4
GSVIVG01013334001 Vitis vinifera HOM05D005104 ORTHO05D006614 1.8e-40 170.2 138 65.2
GSVIVG01003087001 Vitis vinifera HOM05D005104 ORTHO05D006614 5.2e-40 168.7 138 64.5
FAN24G3378 Fragaria x ananassa HOM05D005104 ORTHO05D006614 6.7e-40 168.3 129 66.7
Hma1.2p1_0522F.1_g171590 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 6.7e-40 168.3 204 50.0
Zm00001eb255190 Zea mays HOM05D005104 ORTHO05D006614 2.0e-39 166.8 248 48.8
MBI02_g08741_MAGBIO Magnolia biondii HOM05D005104 ORTHO05D006614 5.7e-39 165.2 136 66.2
Ah.01g009520 Amaranthus hybridus HOM05D005104 ORTHO05D006614 4.8e-38 162.2 229 47.6
Zm00001eb194200 Zea mays HOM05D005104 ORTHO05D006614 3.1e-37 159.5 250 45.2
AUR62013112 Chenopodium quinoa HOM05D005104 ORTHO05D006614 7.0e-37 158.3 236 47.5
AUR62010117 Chenopodium quinoa HOM05D005104 ORTHO05D006614 5.9e-36 155.2 237 46.4
GSVIVG01003093001 Vitis vinifera HOM05D005104 ORTHO05D006614 5.5e-34 148.7 121 65.3
AagrBONN_evm.TU.Sc2ySwM_117.984 Anthoceros agrestis HOM05D005104 ORTHO05D006614 2.1e-33 146.7 235 45.5
Mapoly0096s0033 Marchantia polymorpha HOM05D005104 ORTHO05D006614 6.8e-32 141.7 250 41.6
Sc08g0003350 Simmondsia chinensis HOM05D005104 ORTHO05D006614 2.2e-30 136.7 124 60.5
BolC4t25904H Brassica oleracea HOM05D005104 ORTHO05D006614 1.8e-29 133.7 71 90.1
Pp3c18_21190 Physcomitrium patens HOM05D005104 ORTHO05D006614 2.4e-29 133.3 237 39.7
SMO117G0229 Selaginella moellendorffii HOM05D005104 ORTHO05D006614 2.4e-29 133.3 184 47.8
BolC6t38485H Brassica oleracea HOM05D005104 ORTHO05D006614 5.4e-29 132.1 124 67.7
A02p26040 Brassica napus HOM05D005104 ORTHO05D006614 9.1e-29 131.3 90 80.0
C07p45690 Brassica napus HOM05D005104 ORTHO05D021970 3.2e-26 122.9 137 59.1
C09p03790 Brassica napus HOM05D005104 ORTHO05D006614 4.7e-25 119.0 138 57.2
C05p26840 Brassica napus HOM05D005104 ORTHO05D006614 5.7e-23 112.1 137 56.2
C03p52730 Brassica napus HOM05D005104 ORTHO05D021970 9.8e-23 111.3 156 53.2
Nitab4.5_0000078g0030 Nicotiana tabacum HOM05D005104 ORTHO05D006614 2.8e-22 109.8 242 39.3
EL10Ac9g21466 Beta vulgaris HOM05D005104 ORTHO05D006614 1.8e-21 107.1 72 72.2
unitig_22.g6836 Utricularia gibba HOM05D001058 ORTHO05D000911 6.6e-19 98.6 179 38.0
A10p06060 Brassica napus HOM05D005104 ORTHO05D006614 1.6e-17 94.0 77 70.1
CAN.G1.36 Capsicum annuum HOM05D005104 ORTHO05D006614 3.4e-15 86.3 171 39.8
CBR_g47116 Chara braunii HOM05D005104 ORTHO05D006614 4.9e-14 82.4 229 30.6
Duzib132G1169 Durio zibethinus HOM05D005104 ORTHO05D006614 1.1e-13 81.3 139 46.0
CDE10G1356 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 1.8e-13 80.5 171 36.3
Nitab4.5_0005015g0050 Nicotiana tabacum HOM05D005104 ORTHO05D006614 4.3e-10 69.3 147 38.1
Cre12.g509300 Chlamydomonas reinhardtii HOM05D005104 ORTHO05D006614 2.1e-09 67.0 189 32.3
BolC7t46413H Brassica oleracea HOM05D005104 ORTHO05D006614 2.3e-08 63.5 81 50.6
Hma1.2p1_0516F.1_g170490 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 8.9e-08 61.6 122 39.3


User provided reference genes

Program Settings