Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G41300 Arabidopsis lyrata HOM05D005188 ORTHO05D006153 4.9e-91 337.8 172 100.0
AT5G64040 Arabidopsis thaliana HOM05D005188 ORTHO05D006153 7.0e-90 334.0 172 98.3
Carub.0008s2482 Capsella rubella HOM05D005188 ORTHO05D006153 8.6e-88 327.0 172 95.3
CARHR277950 Cardamine hirsuta HOM05D005188 ORTHO05D006153 1.0e-85 320.1 172 95.9
Sp2g27110 Schrenkiella parvula HOM05D005188 ORTHO05D006153 1.5e-84 316.2 172 94.2
BcaC01g02658 Brassica carinata HOM05D005188 ORTHO05D006153 1.1e-82 310.1 172 91.9
BcaC01g02659 Brassica carinata HOM05D005188 ORTHO05D006153 1.1e-82 310.1 172 91.9
Thhalv10005005m.g Eutrema salsugineum HOM05D005188 ORTHO05D006153 1.9e-82 309.3 172 91.9
BcaB02g09793 Brassica carinata HOM05D005188 ORTHO05D006153 7.0e-82 307.4 172 90.7
A06p30750 Brassica napus HOM05D005188 ORTHO05D006153 1.0e-80 303.5 172 90.7
Aa31LG1G17870 Aethionema arabicum HOM05D005188 ORTHO05D006153 8.6e-80 300.4 175 89.7
BcaB07g29717 Brassica carinata HOM05D005188 ORTHO05D006153 3.6e-78 295.0 172 89.5
C09p09640 Brassica napus HOM05D005188 ORTHO05D006153 1.4e-77 293.1 173 89.6
C02p63110 Brassica napus HOM05D005188 ORTHO05D006153 2.0e-76 289.3 172 87.8
BolC2t12383H Brassica oleracea HOM05D005188 ORTHO05D006153 2.0e-76 289.3 172 87.8
BcaC03g18240 Brassica carinata HOM05D005188 ORTHO05D006153 3.4e-76 288.5 172 87.8
BolC9t53875H Brassica oleracea HOM05D005188 ORTHO05D006153 9.8e-76 287.0 184 84.8
BolC3t18491H Brassica oleracea HOM05D005188 ORTHO05D006153 1.1e-74 283.5 176 85.2
A09p08510 Brassica napus HOM05D005188 ORTHO05D006153 2.9e-67 258.8 173 82.7
BraA09t36500Z Brassica rapa HOM05D005188 ORTHO05D006153 2.9e-67 258.8 173 82.7
COL.COLO4_35748 Corchorus olitorius HOM05D005188 ORTHO05D006153 6.0e-65 251.1 173 75.7
Potri.007G105900 Populus trichocarpa HOM05D005188 ORTHO05D006153 3.0e-64 248.8 177 74.0
Potri.005G063300 Populus trichocarpa HOM05D005188 ORTHO05D006153 6.6e-64 247.7 177 72.9
C03p62290 Brassica napus HOM05D005188 ORTHO05D006153 1.9e-63 246.1 142 91.5
CANSAT01G0911 Cannabis sativa HOM05D005188 ORTHO05D006153 4.3e-63 245.0 174 73.6
Sabra05G0052500 Salix brachista HOM05D005188 ORTHO05D006153 5.6e-63 244.6 177 72.3
TWI75G0084 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 5.6e-63 244.6 172 74.4
Ciclev10002687m.g Citrus clementina HOM05D005188 ORTHO05D006153 3.6e-62 241.9 175 73.7
Lj1g0024625 Lotus japonicus HOM05D005188 ORTHO05D006153 4.7e-62 241.5 172 72.1
Cpa.g.sc3.345 Carica papaya HOM05D005188 ORTHO05D006153 8.1e-62 240.7 178 73.6
Gohir.D11G230800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.1e-61 240.4 178 73.0
Gohir.A11G226800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.4e-61 240.0 178 72.5
BraA06t26017Z Brassica rapa HOM05D005188 ORTHO05D006153 1.8e-61 239.6 142 90.1
THA.LOC104800083 Tarenaya hassleriana HOM05D005188 ORTHO05D006153 1.8e-61 239.6 177 74.6
Thecc.01G132900 Theobroma cacao HOM05D005188 ORTHO05D006153 1.8e-61 239.6 177 72.9
Manes.12G156000 Manihot esculenta HOM05D005188 ORTHO05D006153 1.2e-60 236.9 174 70.1
Glyma.04G215800 Glycine max HOM05D005188 ORTHO05D006153 2.0e-60 236.1 172 69.8
CiPaw.04G081900 Carya illinoinensis HOM05D005188 ORTHO05D006153 7.6e-60 234.2 181 70.7
Glyma.06G150300 Glycine max HOM05D005188 ORTHO05D006153 9.9e-60 233.8 172 70.9
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.3e-59 233.4 176 71.6
Gorai.003G066700 Gossypium raimondii HOM05D005188 ORTHO05D006153 1.3e-59 233.4 185 70.3
Lalb_Chr13g0296451 Lupinus albus HOM05D005188 ORTHO05D006153 1.3e-59 233.4 177 70.6
PGR008G0006 Punica granatum HOM05D005188 ORTHO05D006153 1.3e-59 233.4 172 67.4
PGR119G0239 Punica granatum HOM05D005188 ORTHO05D006153 1.3e-59 233.4 172 67.4
Cc10_g12590 Coffea canephora HOM05D005188 ORTHO05D006153 1.7e-59 233.0 174 69.0
MBI06_g39404_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 1.7e-59 233.0 175 69.1
QL02p001672 Quercus lobata HOM05D005188 ORTHO05D006153 1.7e-59 233.0 174 69.0
TWI79G1553 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 1.7e-59 233.0 172 70.9
CAN.G792.16 Capsicum annuum HOM05D005188 ORTHO05D006153 2.2e-59 232.6 172 69.8
Ca_16917_v3 Cicer arietinum L. HOM05D005188 ORTHO05D006153 2.9e-59 232.3 175 69.1
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 3.8e-59 231.9 176 71.6
VMungo0251G2948 Vigna mungo HOM05D005188 ORTHO05D006153 4.9e-59 231.5 174 67.8
Dinv24366 Davidia involucrata HOM05D005188 ORTHO05D006153 1.1e-58 230.3 175 67.4
Medtr3g095540 Medicago truncatula HOM05D005188 ORTHO05D006153 1.1e-58 230.3 177 71.2
Haze_25240 Corylus avellana HOM05D005188 ORTHO05D006153 1.4e-58 229.9 177 68.9
Sabra07G0086700 Salix brachista HOM05D005188 ORTHO05D006153 1.4e-58 229.9 176 69.9
TPR.G18740 Trifolium pratense HOM05D005188 ORTHO05D006153 2.4e-58 229.2 179 72.1
Prupe.4G271200 Prunus persica HOM05D005188 ORTHO05D006153 3.2e-58 228.8 177 69.5
Cfa002897 Carpinus fangiana HOM05D005188 ORTHO05D006153 4.2e-58 228.4 177 67.8
CDE08G0648 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 5.4e-58 228.0 175 66.9
CiPaw.03G121400 Carya illinoinensis HOM05D005188 ORTHO05D006153 9.3e-58 227.3 177 68.4
TAR381G0300 Trochodendron aralioides HOM05D005188 ORTHO05D006153 9.3e-58 227.3 179 68.7
Sopen08g004510 Solanum pennellii HOM05D005188 ORTHO05D006153 1.6e-57 226.5 172 70.9
ClCG01G015380 Citrullus lanatus HOM05D005188 ORTHO05D006153 2.1e-57 226.1 174 67.2
Lj2A607T35 Lonicera japonica HOM05D005188 ORTHO05D006153 2.1e-57 226.1 173 68.8
MELO3C008060.2 Cucumis melo HOM05D005188 ORTHO05D006153 4.6e-57 224.9 174 66.7
Solyc08g013670.3 Solanum lycopersicum HOM05D005188 ORTHO05D006153 7.8e-57 224.2 172 70.9
Nn2g12180 Nelumbo nucifera HOM05D005188 ORTHO05D006153 1.0e-56 223.8 174 67.2
Lj4g0001203 Lotus japonicus HOM05D005188 ORTHO05D006153 1.3e-56 223.4 172 69.2
Hund23270 Selenicereus undatus HOM05D005188 ORTHO05D006153 1.3e-56 223.4 180 64.4
CsaV3_6G041600 Cucumis sativus L. HOM05D005188 ORTHO05D006153 2.3e-56 222.6 174 65.5
SalBow1G2748 Salvia bowleyana HOM05D005188 ORTHO05D006153 2.3e-56 222.6 172 66.9
Aqoxy5G02315 Aquilegia oxysepala HOM05D005188 ORTHO05D006153 3.9e-56 221.9 175 68.0
Hma1.2p1_0476F.1_g160790 Hydrangea macrophylla HOM05D005188 ORTHO05D006153 3.9e-56 221.9 176 67.6
Phvul.002G269400 Phaseolus vulgaris HOM05D005188 ORTHO05D006153 3.9e-56 221.9 174 66.7
SGA_v2.0_scaffold370G50114 Striga asiatica HOM05D005188 ORTHO05D006153 5.1e-56 221.5 172 68.0
CDE02G4401 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 6.6e-56 221.1 175 65.7
MD15G1441800 Malus domestica HOM05D005188 ORTHO05D006153 6.6e-56 221.1 172 64.5
Psat5g063680 Pisum sativum HOM05D005188 ORTHO05D006153 6.6e-56 221.1 177 68.9
PGSC0003DMG400005805 Solanum tuberosum HOM05D005188 ORTHO05D006153 1.1e-55 220.3 177 67.8
Ah.02g121530 Amaranthus hybridus HOM05D005188 ORTHO05D006153 1.9e-55 219.5 172 64.5
MD01G1004300 Malus domestica HOM05D005188 ORTHO05D006153 3.3e-55 218.8 173 65.3
AUR62017881 Chenopodium quinoa HOM05D005188 ORTHO05D006153 4.3e-55 218.4 172 66.9
Migut.H00702 Erythranthe guttata HOM05D005188 ORTHO05D006153 4.3e-55 218.4 178 69.1
arahy.Tifrunner.gnm1.ann1.DJM1RY Arachis hypogaea HOM05D005188 ORTHO05D006153 9.6e-55 217.2 174 66.7
arahy.Tifrunner.gnm1.ann1.V5WWJ8 Arachis hypogaea HOM05D005188 ORTHO05D006153 9.6e-55 217.2 176 67.6
Peaxi162Scf01257g00019 Petunia axillaris HOM05D005188 ORTHO05D006153 2.1e-54 216.1 183 63.9
Oeu037826.1 Olea europaea HOM05D005188 ORTHO05D006153 2.8e-54 215.7 172 66.3
DCAR_001211 Daucus carota HOM05D005188 ORTHO05D006153 8.1e-54 214.2 174 66.7
FvH4_1g24360 Fragaria vesca HOM05D005188 ORTHO05D006153 1.1e-53 213.8 172 66.3
FAN19G1208 Fragaria x ananassa HOM05D005188 ORTHO05D006153 1.1e-53 213.8 172 66.3
MSTRG.2649 Avicennia marina HOM05D005188 ORTHO05D006153 3.1e-53 212.2 172 65.7
CSS0010064 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 3.1e-53 212.2 178 63.5
CSS0045275 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 3.1e-53 212.2 178 63.5
MBI06_g27435_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 3.1e-53 212.2 131 78.6
Sed0019160 Sechium edule HOM05D005188 ORTHO05D006153 5.3e-53 211.5 179 64.8
FAN28G1395 Fragaria x ananassa HOM05D002517 ORTHO05D003040 1.5e-52 209.9 170 65.3
Nitab4.5_0000673g0170 Nicotiana tabacum HOM05D005188 ORTHO05D006153 2.0e-52 209.5 176 66.5
Sed0010246 Sechium edule HOM05D005188 ORTHO05D006153 4.5e-52 208.4 173 63.6
Actinidia06616 Actinidia chinensis HOM05D005188 ORTHO05D006153 9.9e-52 207.2 177 65.5
GSVIVG01026478001 Vitis vinifera HOM05D005188 ORTHO05D006153 9.9e-52 207.2 172 62.8
RcHm_v2.0_Chr2g0120891 Rosa chinensis HOM05D005188 ORTHO05D006153 1.3e-51 206.8 172 64.5
HanXRQChr04g0107551 Helianthus annuus HOM05D005188 ORTHO05D006153 1.7e-51 206.5 175 64.0
ATR0987G005 Amborella trichopoda HOM05D005188 ORTHO05D006153 2.2e-51 206.1 178 61.8
Atru.chr4.905 Acer truncatum HOM05D005188 ORTHO05D006153 2.9e-51 205.7 173 63.6
MBI03_g42548_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 2.9e-51 205.7 175 61.1
FAN26G2437 Fragaria x ananassa HOM05D002517 ORTHO05D006153 3.8e-51 205.3 172 65.7
unitig_899.g14682 Utricularia gibba HOM05D005188 ORTHO05D006153 4.9e-51 204.9 174 64.9
ECA247G1960 Erigeron canadensis HOM05D005188 ORTHO05D006153 8.4e-51 204.1 170 62.4
Lsat_1_v5_gn_1_10061 Lactuca sativa HOM05D005188 ORTHO05D006153 1.4e-50 203.4 177 62.1
PSO541G2775 Papaver somniferum HOM05D005188 ORTHO05D006153 1.6e-49 199.9 172 62.2
PSO675G9377 Papaver somniferum HOM05D005188 ORTHO05D006153 6.0e-49 198.0 172 59.9
Rhsim10G0133700 Rhododendron simsii HOM05D005188 ORTHO05D006153 1.0e-48 197.2 180 62.2
EL10Ac6g15302 Beta vulgaris HOM05D005188 ORTHO05D006153 3.0e-48 195.7 127 75.6
HPP92_019391 Vanilla planifolia HOM05D005188 ORTHO05D006153 6.7e-48 194.5 176 62.5
vmacro12795 Vaccinium macrocarpon HOM05D005188 ORTHO05D006153 2.1e-46 189.5 183 61.2
Oeu050119.1 Olea europaea HOM05D005188 ORTHO05D006153 3.7e-46 188.7 172 58.1
Zm00001eb409220 Zea mays HOM05D005188 ORTHO05D006153 7.6e-44 181.0 111 75.7
Duzib264G0557 Durio zibethinus HOM05D005188 ORTHO05D006153 1.7e-43 179.9 145 69.0
Zm00001eb138650 Zea mays HOM05D005188 ORTHO05D006153 2.2e-43 179.5 145 64.8
Os12g0189400 Oryza sativa ssp. japonica HOM05D005188 ORTHO05D006153 3.8e-43 178.7 110 78.2
Eucgr.I00200 Eucalyptus grandis HOM05D005188 ORTHO05D006153 1.0e-40 170.6 148 63.5
Duzib147G0711 Durio zibethinus HOM05D005188 ORTHO05D006153 1.1e-39 167.2 148 68.2
SEGI_16120 Sequoiadendron giganteum HOM05D005188 ORTHO05D006153 7.4e-39 164.5 157 51.6
Sc16g0003820 Simmondsia chinensis HOM05D005188 ORTHO05D006153 6.9e-37 157.9 143 60.8
BcaB04g17222 Brassica carinata HOM05D005188 ORTHO05D006153 1.2e-36 157.1 133 63.9
BraA02t09233Z Brassica rapa HOM05D005188 ORTHO05D006153 3.8e-35 152.1 115 79.1
A02p43130 Brassica napus HOM05D005188 ORTHO05D006153 1.9e-31 139.8 100 81.0
SMO144G0055 Selaginella moellendorffii HOM05D005188 ORTHO05D006153 4.3e-31 138.7 82 73.2
BcaB08g36594 Brassica carinata HOM05D005188 ORTHO05D006153 1.3e-30 137.1 74 89.2
BolC2t07163H Brassica oleracea HOM05D005188 ORTHO05D006153 2.8e-30 136.0 74 87.8
BolC7t41311H Brassica oleracea HOM05D005188 ORTHO05D006153 3.7e-30 135.6 72 90.3
BcaC04g18786 Brassica carinata HOM05D005188 ORTHO05D006153 1.4e-29 133.7 74 86.5
Duzib187G0538 Durio zibethinus HOM05D005188 ORTHO05D006153 5.3e-29 131.7 131 64.1
AUR62003566 Chenopodium quinoa HOM05D005188 ORTHO05D006153 1.8e-24 116.7 172 45.3
Mapoly0116s0042 Marchantia polymorpha HOM05D005188 ORTHO05D006153 2.3e-24 116.3 159 44.7
Cre02.g082500 Chlamydomonas reinhardtii HOM05D005188 ORTHO05D006153 1.3e-22 110.5 109 53.2
BcaC03g13890 Brassica carinata HOM05D005188 ORTHO05D006153 1.8e-21 106.7 74 71.6
AagrBONN_evm.TU.Sc2ySwM_362.2803 Anthoceros agrestis HOM05D005188 ORTHO05D006153 2.2e-19 99.8 85 58.8
MCO09G058 Micromonas commoda HOM05D005188 ORTHO05D006153 5.1e-16 88.6 138 40.6
PRCOL_00004565 Prasinoderma coloniale HOM05D005188 ORTHO05D006153 6.7e-16 88.2 79 57.0
Nn5g28540 Nelumbo nucifera HOM05D005188 ORTHO05D006153 3.3e-15 85.9 103 53.4
CBR_g45633 Chara braunii HOM05D005188 ORTHO05D006153 1.3e-14 84.0 140 39.3
Nitab4.5_0005544g0070 Nicotiana tabacum HOM05D005188 ORTHO05D006153 2.2e-14 83.2 112 50.9
BcaB04g20368 Brassica carinata HOM05D005188 ORTHO05D006153 4.5e-12 75.5 69 66.7
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 4.5e-12 75.5 107 48.6
C02p10930 Brassica napus HOM05D005188 ORTHO05D006153 1.0e-08 64.3 30 90.0
BcaB07g32714 Brassica carinata HOM05D004025 ORTHO05D019855 3.7e-06 55.8 40 75.0


User provided reference genes

Program Settings