Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G40960 Arabidopsis lyrata HOM05D000554 ORTHO05D023611 4.6e-93 345.1 260 100.0
Carub.0007s2968 Capsella rubella HOM05D000554 ORTHO05D023611 2.2e-42 176.8 284 65.5
Carub.0008s2451 Capsella rubella HOM05D000554 ORTHO05D023611 1.7e-39 167.2 275 64.7
AT5G63740 Arabidopsis thaliana HOM05D000554 ORTHO05D023611 7.5e-35 151.8 271 63.1
AL8G40970 Arabidopsis lyrata HOM05D000554 ORTHO05D011695 1.1e-33 147.9 266 38.0
AL8G40980 Arabidopsis lyrata HOM05D000554 ORTHO05D011695 3.3e-30 136.3 269 36.1
CARHR277670 Cardamine hirsuta HOM05D000554 ORTHO05D011695 8.9e-28 128.3 267 33.3
Carub.0008s2453 Capsella rubella HOM05D000554 ORTHO05D011695 1.2e-27 127.9 253 33.2
AT5G63750 Arabidopsis thaliana HOM05D000554 ORTHO05D011695 2.2e-26 123.6 270 34.4
Carub.0008s2452 Capsella rubella HOM05D000554 ORTHO05D011695 8.3e-26 121.7 269 32.7
AT5G63760 Arabidopsis thaliana HOM05D000554 ORTHO05D011695 1.2e-24 117.9 192 36.5
AL8G40950 Arabidopsis lyrata HOM05D000554 ORTHO05D011695 2.7e-24 116.7 86 64.0
Carub.0008s2450 Capsella rubella HOM05D000554 ORTHO05D011695 7.8e-24 115.2 86 61.6
C03p62690 Brassica napus HOM05D000554 ORTHO05D011695 2.3e-23 113.6 264 31.8
BolC3t18526H Brassica oleracea HOM05D000554 ORTHO05D011695 5.0e-23 112.5 264 31.8
A06p30330 Brassica napus HOM05D000554 ORTHO05D011695 1.5e-22 110.9 91 60.4
BcaC01g02625 Brassica carinata HOM05D000554 ORTHO05D011695 2.5e-22 110.2 86 61.6
C03p62700 Brassica napus HOM05D000554 ORTHO05D011695 2.5e-22 110.2 86 61.6
BcaB02g09734 Brassica carinata HOM05D000554 ORTHO05D011695 1.2e-21 107.8 91 57.1
AT5G63730 Arabidopsis thaliana HOM05D000554 ORTHO05D011695 3.6e-21 106.3 82 61.0
BcaC01g02624 Brassica carinata HOM05D000554 ORTHO05D011695 3.6e-21 106.3 264 31.4
BcaB02g09733 Brassica carinata HOM05D000554 ORTHO05D011695 1.0e-20 104.8 245 31.8
A06p30340 Brassica napus HOM05D000554 ORTHO05D011695 3.4e-19 99.8 81 54.3
BraA06t25982Z Brassica rapa HOM05D000554 ORTHO05D011695 3.4e-19 99.8 81 54.3
Carub.0004s0681 Capsella rubella HOM05D000554 ORTHO05D023611 1.3e-18 97.8 64 68.8
CARHR277660 Cardamine hirsuta HOM05D000554 ORTHO05D011695 1.7e-18 97.4 239 31.4
C02p03730 Brassica napus HOM05D000554 ORTHO05D011030 7.8e-16 88.6 76 50.0
BraA02t04967Z Brassica rapa HOM05D000554 ORTHO05D011030 3.9e-15 86.3 76 50.0
AT5G08730 Arabidopsis thaliana HOM05D000554 ORTHO05D011030 6.6e-15 85.5 75 52.0
Thhalv10013280m.g Eutrema salsugineum HOM05D000554 ORTHO05D011030 1.1e-14 84.7 80 46.2
BcaC03g13241 Brassica carinata HOM05D000554 ORTHO05D011030 1.5e-14 84.3 76 48.7
BolC2t06333H Brassica oleracea HOM05D000554 ORTHO05D011030 1.5e-14 84.3 76 48.7
Sp5g15470 Schrenkiella parvula HOM05D000554 ORTHO05D011030 1.5e-14 84.3 83 44.6
Thhalv10015828m.g Eutrema salsugineum HOM05D000554 ORTHO05D011030 3.3e-14 83.2 96 44.8
Sp6g34140 Schrenkiella parvula HOM05D000554 ORTHO05D011030 3.3e-14 83.2 86 44.2
AL6G19480 Arabidopsis lyrata HOM05D000554 ORTHO05D011030 4.3e-14 82.8 75 49.3
BolC9t59573H Brassica oleracea HOM05D000554 ORTHO05D011030 4.3e-14 82.8 71 52.1
BcaB08g37230 Brassica carinata HOM05D002593 ORTHO05D006476 5.6e-14 82.4 79 45.6
Carub.0003s3125 Capsella rubella HOM05D000554 ORTHO05D114740 9.5e-14 81.6 54 66.7
BcaB05g21569 Brassica carinata HOM05D000554 ORTHO05D011030 1.2e-13 81.3 78 48.7
Carub.0006s0770 Capsella rubella HOM05D000554 ORTHO05D011030 2.1e-13 80.5 73 49.3
THA.LOC104819354 Tarenaya hassleriana HOM05D000554 ORTHO05D011030 2.8e-13 80.1 86 46.5
Sp2g26830 Schrenkiella parvula HOM05D000554 ORTHO05D011695 6.8e-12 75.5 62 59.7
BraA06t25191Z Brassica rapa HOM05D000554 ORTHO05D011030 2.0e-11 73.9 87 43.7
BraA06t25213Z Brassica rapa HOM05D000554 ORTHO05D011030 3.4e-11 73.2 87 43.7
A06p21040 Brassica napus HOM05D000554 ORTHO05D011030 5.8e-11 72.4 87 42.5
A06p21240 Brassica napus HOM05D000554 ORTHO05D011030 5.8e-11 72.4 87 42.5
BcaB01g01066 Brassica carinata HOM05D000554 ORTHO05D011030 7.5e-11 72.0 79 43.0
CARHR204280 Cardamine hirsuta HOM05D000554 ORTHO05D011030 7.5e-11 72.0 79 46.8
Aa31LG3G17830 Aethionema arabicum HOM05D000554 ORTHO05D011030 2.9e-10 70.1 84 42.9
Migut.N03110 Erythranthe guttata HOM05D000554 ORTHO05D000860 2.9e-10 70.1 77 46.8
BcaB01g01043 Brassica carinata HOM05D000554 ORTHO05D011030 3.7e-10 69.7 88 40.9
BcaB01g01068 Brassica carinata HOM05D000554 ORTHO05D011030 3.7e-10 69.7 88 40.9
Actinidia34615 Actinidia chinensis HOM05D000554 ORTHO05D000860 4.9e-10 69.3 82 43.9
Rhsim09G0029300 Rhododendron simsii HOM05D000554 ORTHO05D000860 4.9e-10 69.3 82 40.2
SalBow6G3509 Salvia bowleyana HOM05D000554 ORTHO05D000860 6.4e-10 68.9 82 42.7
Actinidia35968 Actinidia chinensis HOM05D000554 ORTHO05D000860 8.3e-10 68.6 77 45.5
C03p70200 Brassica napus HOM05D000554 ORTHO05D011030 8.3e-10 68.6 85 40.0
C03p70440 Brassica napus HOM05D000554 ORTHO05D011030 8.3e-10 68.6 85 40.0
BcaC01g01932 Brassica carinata HOM05D000554 ORTHO05D011030 1.1e-09 68.2 85 38.8
BolC3t19275H Brassica oleracea HOM05D000554 ORTHO05D011030 1.1e-09 68.2 85 38.8
BolC3t19303H Brassica oleracea HOM05D000554 ORTHO05D011030 1.1e-09 68.2 85 38.8
BcaB01g01036 Brassica carinata HOM05D000554 ORTHO05D011030 1.9e-09 67.4 88 39.8
Gorai.005G019700 Gossypium raimondii HOM05D000554 ORTHO05D000860 1.9e-09 67.4 82 40.2
BcaB01g01032 Brassica carinata HOM05D000554 ORTHO05D011030 2.4e-09 67.0 88 38.6
BcaB01g01034 Brassica carinata HOM05D000554 ORTHO05D011030 2.4e-09 67.0 88 38.6
CSS0006355 Camellia sinensis var. sinensis HOM05D000554 ORTHO05D000860 2.4e-09 67.0 82 41.5
Hma1.2p1_0754F.1_g213090 Hydrangea macrophylla HOM05D000554 ORTHO05D000860 2.4e-09 67.0 82 41.5
MD08G1038100 Malus domestica HOM05D000554 ORTHO05D000860 2.4e-09 67.0 79 40.5
BcaC01g01933 Brassica carinata HOM05D000554 ORTHO05D011030 4.1e-09 66.2 78 35.9
Gohir.D02G016200 Gossypium hirsutum HOM05D000554 ORTHO05D000860 4.1e-09 66.2 82 40.2
Sp4g18730 Schrenkiella parvula HOM05D000554 ORTHO05D011030 4.1e-09 66.2 82 36.6
vmacro00609 Vaccinium macrocarpon HOM05D000554 ORTHO05D000860 4.1e-09 66.2 82 39.0
Aa31LG5G5240 Aethionema arabicum HOM05D000554 ORTHO05D000108 5.4e-09 65.9 74 37.8
Rhsim09G0029200 Rhododendron simsii HOM05D000554 ORTHO05D000860 5.4e-09 65.9 82 39.0
Haze_01537 Corylus avellana HOM05D000554 ORTHO05D000860 7.0e-09 65.5 82 41.5
Gohir.A02G014600 Gossypium hirsutum HOM05D000554 ORTHO05D000860 7.0e-09 65.5 82 39.0
Rhsim09G0029900 Rhododendron simsii HOM05D000554 ORTHO05D000860 7.0e-09 65.5 82 39.0
Zm00001eb425570 Zea mays HOM05D000554 ORTHO05D000860 7.0e-09 65.5 82 41.5
QL10p048265 Quercus lobata HOM05D000554 ORTHO05D000860 1.2e-08 64.7 82 39.0
Zm00001eb078850 Zea mays HOM05D000554 ORTHO05D000860 1.2e-08 64.7 82 40.2
CDE09G0511 Ceratophyllum demersum HOM05D000554 ORTHO05D010796 2.1e-08 63.9 77 42.9
RcHm_v2.0_Chr3g0460891 Rosa chinensis HOM05D000554 ORTHO05D035816 2.1e-08 63.9 85 36.5
Zm00001eb309470 Zea mays HOM05D000554 ORTHO05D000860 2.1e-08 63.9 82 40.2
AL203U10010 Arabidopsis lyrata HOM05D000554 ORTHO05D011695 2.7e-08 63.5 38 71.1
CDE02G3725 Ceratophyllum demersum HOM05D000554 ORTHO05D000860 2.7e-08 63.5 77 42.9
MBI11_g40785_MAGBIO Magnolia biondii HOM05D000554 ORTHO05D000860 2.7e-08 63.5 77 39.0
Cfa015134 Carpinus fangiana HOM05D000554 ORTHO05D000860 3.5e-08 63.2 82 40.2
Cc01_g07310 Coffea canephora HOM05D000554 ORTHO05D000860 4.6e-08 62.8 77 39.0
Nitab4.5_0003132g0050 Nicotiana tabacum HOM05D000554 ORTHO05D000860 4.6e-08 62.8 77 40.3
Sp5g15490 Schrenkiella parvula HOM05D000554 ORTHO05D011030 4.6e-08 62.8 81 38.3
PGSC0003DMG400027011 Solanum tuberosum HOM05D000554 ORTHO05D000860 6.0e-08 62.4 82 39.0
TPR.G34251 Trifolium pratense HOM05D000554 ORTHO05D000860 6.0e-08 62.4 77 37.7
MD13G1275700 Malus domestica HOM05D000554 ORTHO05D000860 7.8e-08 62.0 85 38.8
Os04g0492100 Oryza sativa ssp. japonica HOM05D000554 ORTHO05D000860 7.8e-08 62.0 82 37.8
PSO040G0010 Papaver somniferum HOM05D000554 ORTHO05D000860 7.8e-08 62.0 74 35.1
CAN.G65.177 Capsicum annuum HOM05D000554 ORTHO05D000860 1.0e-07 61.6 77 39.0
Medtr3g065410 Medicago truncatula HOM05D000554 ORTHO05D000860 1.0e-07 61.6 82 37.8
Sopen06g029720 Solanum pennellii HOM05D000554 ORTHO05D000860 1.0e-07 61.6 77 40.3
GSVIVG01010742001 Vitis vinifera HOM05D000554 ORTHO05D000860 1.0e-07 61.6 82 37.8
QL06p040143 Quercus lobata HOM05D000554 ORTHO05D000860 1.3e-07 61.2 71 39.4
Zm00001eb383420 Zea mays HOM05D000554 ORTHO05D000860 1.3e-07 61.2 82 40.2
EL10Ac3g05581 Beta vulgaris HOM05D000554 ORTHO05D000860 1.7e-07 60.8 83 37.3
Glyma.13G343300 Glycine max HOM05D000554 ORTHO05D000860 1.7e-07 60.8 82 36.6
Lj3A229G8 Lonicera japonica HOM05D000554 ORTHO05D000860 1.7e-07 60.8 71 39.4
MBI08_g32103_MAGBIO Magnolia biondii HOM05D000554 ORTHO05D000860 1.7e-07 60.8 77 37.7
TPR.G18853 Trifolium pratense HOM05D000554 ORTHO05D000860 2.3e-07 60.5 82 39.0
Lsat_1_v5_gn_0_14601 Lactuca sativa HOM05D000554 ORTHO05D000860 3.0e-07 60.1 82 39.0
Sabra17G0020400 Salix brachista HOM05D000554 ORTHO05D000860 3.0e-07 60.1 73 38.4
Hund09514 Selenicereus undatus HOM05D000554 ORTHO05D000860 3.0e-07 60.1 84 36.9
TPR.G12359 Trifolium pratense HOM05D000554 ORTHO05D000860 3.0e-07 60.1 82 39.0
VMungo1080G1202 Vigna mungo HOM05D000554 ORTHO05D000860 3.0e-07 60.1 82 36.6
Lalb_Chr22g0352221 Lupinus albus HOM05D000554 ORTHO05D000860 3.9e-07 59.7 82 39.0
Pp3c8_15350 Physcomitrium patens HOM05D000554 ORTHO05D000860 3.9e-07 59.7 84 39.3
BcaC01g01951 Brassica carinata HOM05D000554 ORTHO05D011030 5.0e-07 59.3 85 37.6
Lj3g0001003 Lotus japonicus HOM05D000554 ORTHO05D000860 5.0e-07 59.3 82 36.6
MD04G1007200 Malus domestica HOM05D000554 ORTHO05D000860 5.0e-07 59.3 74 36.5
PSO423G0091 Papaver somniferum HOM05D000554 ORTHO05D000860 5.0e-07 59.3 78 37.2
Potri.007G126900 Populus trichocarpa HOM05D000554 ORTHO05D000860 5.0e-07 59.3 77 39.0
arahy.Tifrunner.gnm1.ann1.4QB72P Arachis hypogaea HOM05D000554 ORTHO05D000860 6.6e-07 58.9 82 36.6
Psat1g007400 Pisum sativum HOM05D000554 ORTHO05D000860 6.6e-07 58.9 82 36.6
Potri.017G032000 Populus trichocarpa HOM05D000554 ORTHO05D000860 8.6e-07 58.5 77 39.0
PSO040G0020 Papaver somniferum HOM05D000554 ORTHO05D000860 1.9e-06 57.4 78 35.9
PSO423G0124 Papaver somniferum HOM05D000554 ORTHO05D000860 1.9e-06 57.4 74 32.4
Pp3c23_14640 Physcomitrium patens HOM05D000554 ORTHO05D000860 1.9e-06 57.4 77 37.7
CiPaw.15G069300 Carya illinoinensis HOM05D000554 ORTHO05D000860 2.5e-06 57.0 79 39.2
A10p28050 Brassica napus HOM05D000554 ORTHO05D011030 3.3e-06 56.6 73 42.5
BraA10t44854Z Brassica rapa HOM05D000554 ORTHO05D011030 3.3e-06 56.6 73 42.5
QL03p033272 Quercus lobata HOM05D000554 ORTHO05D000860 3.3e-06 56.6 71 36.6
Carub.0004s1307 Capsella rubella HOM05D000554 ORTHO05D000860 5.6e-06 55.8 78 38.5
Sp6g31880 Schrenkiella parvula HOM05D000554 ORTHO05D000860 5.6e-06 55.8 77 35.1
Ca_01267_v3 Cicer arietinum L. HOM05D000554 ORTHO05D000860 7.3e-06 55.5 82 35.4
Pp3c24_15470 Physcomitrium patens HOM05D000554 ORTHO05D000860 9.5e-06 55.1 79 36.7


User provided reference genes

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