Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 3.8e-185 651.4 325 100.0
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 1.6e-183 646.0 325 99.1
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 2.2e-177 625.5 325 95.1
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 1.1e-176 623.2 325 95.7
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 1.1e-176 623.2 325 94.8
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 7.3e-173 610.5 325 91.7
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 1.4e-171 606.3 325 91.7
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 4.0e-171 604.7 322 91.3
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 5.3e-171 604.4 325 92.0
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 5.8e-170 600.9 322 91.0
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 5.4e-168 594.3 323 90.7
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 1.2e-167 593.2 323 91.0
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 1.0e-166 590.1 323 90.4
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 5.1e-166 587.8 324 90.4
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 6.7e-158 560.8 326 84.7
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 7.6e-154 547.4 323 84.5
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 2.7e-151 538.9 337 80.4
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 2.2e-148 529.3 325 79.4
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 1.8e-134 483.0 324 71.0
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 1.7e-129 466.5 325 68.9
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 1.5e-128 463.4 325 68.9
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 4.0e-126 455.3 325 66.5
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 2.0e-125 453.0 325 65.8
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 5.7e-125 451.4 325 66.5
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 5.7e-125 451.4 324 66.4
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 7.5e-125 451.1 326 68.1
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 7.5e-125 451.1 325 67.1
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 9.7e-125 450.7 325 68.0
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.7e-124 449.9 324 66.4
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 2.2e-124 449.5 326 67.5
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 2.2e-124 449.5 327 68.2
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 2.4e-123 446.0 324 65.7
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 2.0e-122 443.0 325 65.5
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 2.0e-122 443.0 324 65.1
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.0e-122 443.0 324 65.1
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 2.7e-122 442.6 325 66.5
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 3.5e-122 442.2 325 64.6
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 1.0e-121 440.7 327 66.4
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 1.3e-121 440.3 325 64.6
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.7e-121 439.9 325 65.5
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 3.8e-121 438.7 322 64.9
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 5.0e-121 438.3 335 64.5
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 6.5e-121 438.0 324 65.1
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 6.5e-121 438.0 327 65.7
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 6.5e-121 438.0 325 66.8
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.1e-120 437.2 327 65.7
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 1.5e-120 436.8 325 65.8
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 1.9e-120 436.4 326 64.1
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 1.9e-120 436.4 327 65.4
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.9e-120 436.4 327 65.4
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 3.2e-120 435.6 326 64.7
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 7.2e-120 434.5 327 66.1
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 9.4e-120 434.1 326 64.4
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 9.4e-120 434.1 326 66.9
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.2e-119 433.7 326 64.4
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 1.2e-119 433.7 326 66.3
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 2.1e-119 433.0 324 63.6
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 2.7e-119 432.6 325 64.3
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 3.6e-119 432.2 324 63.3
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 6.1e-119 431.4 323 63.8
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 8.0e-119 431.0 326 64.7
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 1.0e-118 430.6 325 64.6
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 2.3e-118 429.5 327 63.3
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 4.0e-118 428.7 325 64.9
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 5.2e-118 428.3 327 63.3
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 6.8e-118 427.9 328 64.3
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 5.7e-117 424.9 323 63.5
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 5.7e-117 424.9 325 64.3
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 7.5e-117 424.5 326 63.8
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 9.8e-117 424.1 326 63.2
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 2.8e-116 422.5 324 63.9
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 3.7e-116 422.2 325 63.1
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 4.8e-116 421.8 325 63.7
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 8.3e-116 421.0 323 62.8
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 1.4e-115 420.2 325 62.2
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 1.4e-115 420.2 325 61.8
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 2.4e-115 419.5 373 59.0
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 3.1e-115 419.1 325 61.5
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 7.0e-115 417.9 324 63.3
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.2e-114 417.2 323 62.2
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 1.6e-114 416.8 325 61.5
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 3.5e-114 415.6 325 62.5
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 7.7e-114 414.5 327 62.4
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 2.2e-113 412.9 322 62.1
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 2.2e-113 412.9 324 61.4
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.2e-113 412.9 322 62.1
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 2.9e-113 412.5 323 61.9
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 8.5e-113 411.0 324 62.0
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 1.1e-112 410.6 325 60.9
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.2e-112 409.1 324 60.5
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 4.2e-112 408.7 325 62.2
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 5.5e-112 408.3 324 60.5
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 9.4e-112 407.5 325 62.2
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 2.7e-111 406.0 330 60.0
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 4.7e-111 405.2 323 60.7
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 1.0e-110 404.1 322 61.5
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 8.3e-108 394.4 310 60.0
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 7.7e-106 387.9 305 60.3
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 1.0e-105 387.5 327 59.0
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 1.5e-104 383.6 325 58.5
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 3.3e-104 382.5 319 58.0
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 2.1e-103 379.8 324 58.0
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 2.8e-103 379.4 325 58.2
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 8.9e-102 374.4 306 58.5
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 8.9e-102 374.4 282 64.5
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 1.5e-101 373.6 323 58.8
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 7.0e-99 364.8 289 61.6
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 9.2e-99 364.4 267 66.3
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 1.6e-98 363.6 295 61.7
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 1.0e-97 360.9 253 68.0
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 1.1e-96 357.5 416 49.0
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 3.6e-95 352.4 375 50.7
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 5.8e-93 345.1 325 56.3
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.2e-92 343.2 325 55.4
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 5.4e-91 338.6 324 53.1
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 2.3e-89 333.2 542 37.6
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.4e-83 313.9 325 52.3
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 1.9e-83 313.5 290 53.1
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 8.6e-81 304.7 272 55.1
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 1.5e-80 303.9 310 48.4
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 1.9e-80 303.5 312 48.4
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 4.7e-79 298.9 306 48.7
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 8.1e-79 298.1 688 32.1
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 1.2e-77 294.3 235 57.0
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 4.1e-75 285.8 259 56.8
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 7.1e-75 285.0 260 52.7
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 1.2e-74 284.3 223 60.5
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.6e-71 273.9 202 64.4
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 4.9e-68 262.3 307 44.0
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 3.0e-65 253.1 222 55.9
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 7.9e-58 228.4 178 62.4
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 1.3e-52 211.1 295 38.6
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 2.4e-38 163.7 192 41.1
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 3.7e-31 139.8 119 62.2
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 6.3e-31 139.0 96 69.8
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 5.0e-28 129.4 119 60.5
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 3.9e-25 119.8 75 66.7
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 5.1e-25 119.4 121 51.2
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 6.7e-25 119.0 96 57.3
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 6.7e-25 119.0 86 67.4
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.5e-24 117.9 96 56.2
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 3.1e-22 110.2 333 25.8
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 8.8e-17 92.0 70 67.1
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 3.7e-15 86.7 84 52.4
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 1.6e-13 81.3 65 60.0
BcaC04g19837 Brassica carinata HOM05D004699 ORTHO05D092684 4.7e-10 69.7 135 38.5
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 6.7e-09 65.9 61 57.4
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 3.3e-08 63.5 71 54.9
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 3.3e-08 63.5 71 54.9
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 3.3e-08 63.5 71 54.9
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 1.3e-07 61.6 54 53.7
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.8e-07 60.5 43 69.8
BraA02t09191Z Brassica rapa HOM05D001153 ORTHO05D000949 3.7e-07 60.1 40 70.0


User provided reference genes

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