Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G40200 Arabidopsis lyrata HOM05D006995 ORTHO05D008870 3.2e-42 174.9 100 100.0
Sp2g26260 Schrenkiella parvula HOM05D006995 ORTHO05D008870 1.1e-39 166.4 100 87.0
Aa31LG1G18840 Aethionema arabicum HOM05D006995 ORTHO05D008870 3.6e-38 161.4 100 83.0
AT5G63135 Arabidopsis thaliana HOM05D006995 ORTHO05D008870 3.6e-38 161.4 100 93.0
CARHR276970 Cardamine hirsuta HOM05D006995 ORTHO05D008870 6.2e-38 160.6 100 89.0
BcaB02g09725 Brassica carinata HOM05D006995 ORTHO05D008870 4.4e-36 154.5 101 86.1
Carub.0008s2389 Capsella rubella HOM05D006995 ORTHO05D008870 4.4e-36 154.5 100 90.0
BraA06t25934Z Brassica rapa HOM05D006995 ORTHO05D008870 2.2e-35 152.1 102 84.3
THA.LOC104798964 Tarenaya hassleriana HOM05D006995 ORTHO05D008870 3.8e-35 151.4 100 84.0
A09p08140 Brassica napus HOM05D006995 ORTHO05D008870 4.9e-35 151.0 102 88.2
BraA09t36465Z Brassica rapa HOM05D006995 ORTHO05D008870 8.4e-35 150.2 100 85.0
A06p29860 Brassica napus HOM05D006995 ORTHO05D008870 1.1e-34 149.8 102 83.3
Thhalv10023776m.g Eutrema salsugineum HOM05D006995 ORTHO05D008870 4.2e-34 147.9 100 83.0
BolC3t18607H Brassica oleracea HOM05D006995 ORTHO05D008870 5.4e-34 147.5 102 82.4
BcaC01g02557 Brassica carinata HOM05D006995 ORTHO05D008870 6.2e-30 134.0 102 76.5
C03p63500 Brassica napus HOM05D006995 ORTHO05D008870 6.2e-30 134.0 102 76.5
BcaC04g23358 Brassica carinata HOM05D006995 ORTHO05D008870 1.4e-29 132.9 93 79.6
C09p09200 Brassica napus HOM05D006995 ORTHO05D008870 1.4e-29 132.9 93 79.6
BolC9t53833H Brassica oleracea HOM05D006995 ORTHO05D008870 1.4e-29 132.9 93 79.6
Peaxi162Scf00089g01427 Petunia axillaris HOM05D006995 ORTHO05D008870 2.2e-27 125.6 100 63.0
Potri.012G085100 Populus trichocarpa HOM05D006995 ORTHO05D008870 6.4e-27 124.0 100 71.0
Manes.14G061000 Manihot esculenta HOM05D006995 ORTHO05D008870 1.9e-26 122.5 100 72.0
MD14G1172000 Malus domestica HOM05D006995 ORTHO05D008870 5.4e-26 120.9 100 67.0
Cc04_g11640 Coffea canephora HOM05D006995 ORTHO05D008870 7.1e-26 120.6 100 66.0
Psat5g116320 Pisum sativum HOM05D006995 ORTHO05D008870 7.1e-26 120.6 100 68.0
Glyma.04G187800 Glycine max HOM05D006995 ORTHO05D008870 1.2e-25 119.8 100 71.0
MSTRG.23164 Avicennia marina HOM05D006995 ORTHO05D008870 1.6e-25 119.4 100 66.0
Prupe.5G166100 Prunus persica HOM05D006995 ORTHO05D008870 2.1e-25 119.0 100 63.0
unitig_26.g8807 Utricularia gibba HOM05D006995 ORTHO05D008870 2.7e-25 118.6 100 63.0
Ca_16134_v3 Cicer arietinum L. HOM05D006995 ORTHO05D008870 3.5e-25 118.2 100 72.0
Lj9C443G5 Lonicera japonica HOM05D006995 ORTHO05D008870 6.0e-25 117.5 100 65.0
Phvul.009G174500 Phaseolus vulgaris HOM05D006995 ORTHO05D008870 1.0e-24 116.7 100 70.0
Lj1g0014247 Lotus japonicus HOM05D006995 ORTHO05D008870 1.3e-24 116.3 100 68.0
Dinv20602 Davidia involucrata HOM05D006995 ORTHO05D008870 1.7e-24 115.9 100 59.0
Glyma.06G177900 Glycine max HOM05D006995 ORTHO05D008870 2.3e-24 115.5 100 69.0
Hma1.2p1_0046F.1_g027080 Hydrangea macrophylla HOM05D006995 ORTHO05D008870 2.3e-24 115.5 100 65.0
TWI23G0026 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 2.3e-24 115.5 100 68.0
FAN08G0020 Fragaria x ananassa HOM05D006995 ORTHO05D008870 3.0e-24 115.2 100 64.0
FvH4_5g06250 Fragaria vesca HOM05D006995 ORTHO05D008870 3.9e-24 114.8 100 64.0
RcHm_v2.0_Chr7g0192611 Rosa chinensis HOM05D006995 ORTHO05D008870 3.9e-24 114.8 100 64.0
Actinidia24594 Actinidia chinensis HOM05D006995 ORTHO05D008870 5.1e-24 114.4 100 64.0
CSS0043708 Camellia sinensis var. sinensis HOM05D006995 ORTHO05D008870 5.1e-24 114.4 100 58.0
MSTRG.11491 Avicennia marina HOM05D006995 ORTHO05D008870 8.7e-24 113.6 100 65.0
FAN18G0637 Fragaria x ananassa HOM05D006995 ORTHO05D008870 8.7e-24 113.6 100 63.0
VMungo1309G2685 Vigna mungo HOM05D006995 ORTHO05D008870 1.5e-23 112.8 92 69.6
arahy.Tifrunner.gnm1.ann1.W5ECLN Arachis hypogaea HOM05D006995 ORTHO05D008870 1.9e-23 112.5 100 66.0
arahy.Tifrunner.gnm1.ann1.X0DT51 Arachis hypogaea HOM05D006995 ORTHO05D008870 1.9e-23 112.5 100 66.0
SalBow5G1368 Salvia bowleyana HOM05D006995 ORTHO05D008870 1.9e-23 112.5 100 65.0
SalBow5G3606 Salvia bowleyana HOM05D006995 ORTHO05D008870 1.9e-23 112.5 100 65.0
Oeu008873.1 Olea europaea HOM05D006995 ORTHO05D008870 2.5e-23 112.1 100 61.0
TWI39G0505 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 4.3e-23 111.3 100 68.0
TAR629G0625 Trochodendron aralioides HOM05D006995 ORTHO05D008870 5.6e-23 110.9 100 63.0
Migut.O00152 Erythranthe guttata HOM05D006995 ORTHO05D008870 2.8e-22 108.6 93 59.1
Nitab4.5_0001793g0100 Nicotiana tabacum HOM05D006995 ORTHO05D008870 6.2e-22 107.5 100 64.0
Nitab4.5_0003703g0070 Nicotiana tabacum HOM05D006995 ORTHO05D008870 6.2e-22 107.5 100 64.0
ClCG01G013460 Citrullus lanatus HOM05D006995 ORTHO05D008870 1.4e-21 106.3 100 67.0
MELO3C002295.2 Cucumis melo HOM05D006995 ORTHO05D008870 1.4e-21 106.3 100 67.0
Lsat_1_v5_gn_5_14241 Lactuca sativa HOM05D006995 ORTHO05D008870 1.4e-21 106.3 98 63.3
Lalb_Chr08g0236711 Lupinus albus HOM05D006995 ORTHO05D008870 1.8e-21 105.9 100 65.0
CsaV3_1G008810 Cucumis sativus L. HOM05D006995 ORTHO05D008870 3.1e-21 105.1 100 67.0
Nn4g22611 Nelumbo nucifera HOM05D006995 ORTHO05D008870 3.1e-21 105.1 100 60.0
QL10p006993 Quercus lobata HOM05D006995 ORTHO05D008870 2.0e-20 102.4 98 64.3
Eucgr.K02801 Eucalyptus grandis HOM05D006995 ORTHO05D008870 2.6e-20 102.1 98 62.2
Solyc03g112290.2 Solanum lycopersicum HOM05D006995 ORTHO05D008870 3.4e-20 101.7 100 62.0
Sopen03g031390 Solanum pennellii HOM05D006995 ORTHO05D008870 3.4e-20 101.7 100 62.0
PGSC0003DMG400018185 Solanum tuberosum HOM05D006995 ORTHO05D008870 7.6e-20 100.5 100 61.0
Medtr3g077017 Medicago truncatula HOM05D006995 ORTHO05D008870 2.2e-19 99.0 100 66.0
Sed0018383 Sechium edule HOM05D006995 ORTHO05D008870 2.2e-19 99.0 100 65.0
Atru.chr9.2568 Acer truncatum HOM05D006995 ORTHO05D008870 2.9e-19 98.6 69 69.6
CANSAT80G0726 Cannabis sativa HOM05D006995 ORTHO05D008870 4.9e-19 97.8 100 63.0
CAN.G338.27 Capsicum annuum HOM05D006995 ORTHO05D008870 4.9e-19 97.8 100 60.0
Cpa.g.sc159.33 Carica papaya HOM05D006995 ORTHO05D008870 6.4e-19 97.4 100 64.0
Duzib205G0595 Durio zibethinus HOM05D006995 ORTHO05D008870 6.4e-19 97.4 100 64.0
HanXRQChr04g0101331 Helianthus annuus HOM05D006995 ORTHO05D008870 8.4e-19 97.1 100 61.0
PGR044G0957 Punica granatum HOM05D006995 ORTHO05D008870 8.4e-19 97.1 91 62.6
Thecc.03G024900 Theobroma cacao HOM05D006995 ORTHO05D008870 2.4e-18 95.5 72 63.9
CiPaw.11G020900 Carya illinoinensis HOM05D006995 ORTHO05D008870 7.1e-18 94.0 93 63.4
Gohir.A12G199700 Gossypium hirsutum HOM05D006995 ORTHO05D008870 9.3e-18 93.6 100 63.0
Gorai.008G217400 Gossypium raimondii HOM05D006995 ORTHO05D008870 9.3e-18 93.6 100 63.0
CiPaw.12G030600 Carya illinoinensis HOM05D006995 ORTHO05D008870 1.2e-17 93.2 100 53.0
Ca_22795_v3 Cicer arietinum L. HOM05D001863 ORTHO05D001962 2.1e-17 92.4 78 62.8
BolC3t18603H Brassica oleracea HOM05D006995 ORTHO05D008870 3.5e-17 91.7 48 93.8
Aqoxy5G03762 Aquilegia oxysepala HOM05D006995 ORTHO05D008870 4.6e-17 91.3 100 54.0
ATR0824G277 Amborella trichopoda HOM05D006995 ORTHO05D008870 2.3e-16 89.0 100 53.0
Hund02782 Selenicereus undatus HOM05D006995 ORTHO05D008870 3.9e-16 88.2 100 55.0
Gohir.D12G202400 Gossypium hirsutum HOM05D006995 ORTHO05D008870 6.7e-16 87.4 100 63.0
vmacro16643 Vaccinium macrocarpon HOM05D006995 ORTHO05D008870 5.6e-15 84.3 131 45.0
HPP92_024272 Vanilla planifolia HOM05D006995 ORTHO05D008870 1.6e-14 82.8 100 55.0
Sc04g0001540 Simmondsia chinensis HOM05D006995 ORTHO05D008870 2.8e-14 82.0 100 49.0
ATR0743G118 Amborella trichopoda HOM05D006995 ORTHO05D008870 3.7e-14 81.6 100 49.0
SGA_v2.0_scaffold90G27846 Striga asiatica HOM05D006995 ORTHO05D008870 6.2e-14 80.9 53 71.7
Zm00001eb183600 Zea mays HOM05D006995 ORTHO05D008870 4.0e-13 78.2 100 52.0
Os02g0593400 Oryza sativa ssp. japonica HOM05D006995 ORTHO05D008870 6.9e-13 77.4 100 52.0
Zm00001eb245930 Zea mays HOM05D006995 ORTHO05D008870 6.9e-13 77.4 100 51.0
Ah.11g042030 Amaranthus hybridus HOM05D006995 ORTHO05D008870 4.5e-12 74.7 90 54.4
COL.COLO4_05561 Corchorus olitorius HOM05D006995 ORTHO05D008870 5.8e-12 74.3 48 72.9
EL10Ac5g10662 Beta vulgaris HOM05D006995 ORTHO05D008870 7.6e-12 73.9 100 51.0
Sabra12G0061300 Salix brachista HOM05D006995 ORTHO05D008870 1.0e-11 73.6 48 70.8
Haze_07576 Corylus avellana HOM05D006995 ORTHO05D008870 1.7e-11 72.8 48 68.8
BcaC01g05868 Brassica carinata HOM05D001146 ORTHO05D000973 4.2e-10 68.2 56 71.4
C03p21590 Brassica napus HOM05D001146 ORTHO05D000973 4.2e-10 68.2 56 71.4
C07p20090 Brassica napus HOM05D001146 ORTHO05D000973 4.2e-10 68.2 56 71.4
BolC7t42530H Brassica oleracea HOM05D001146 ORTHO05D000973 4.2e-10 68.2 56 71.4
BolC3t14543H Brassica oleracea HOM05D006995 ORTHO05D104637 5.5e-10 67.8 43 83.7
ECA247G3417 Erigeron canadensis HOM05D006995 ORTHO05D008870 1.2e-09 66.6 93 49.5
C06p19720 Brassica napus HOM05D001146 ORTHO05D000973 1.6e-09 66.2 41 82.9
Ah.11g051120 Amaranthus hybridus HOM05D006995 ORTHO05D008870 4.6e-09 64.7 81 59.3
GSVIVG01007657001 Vitis vinifera HOM05D006995 ORTHO05D008870 1.0e-08 63.5 61 62.3
AUR62008151 Chenopodium quinoa HOM05D006995 ORTHO05D008870 1.3e-08 63.2 57 57.9
SHI24880 Sapria himalayana HOM05D006995 ORTHO05D008870 6.7e-08 60.8 91 45.1
MELO3C035410.2 Cucumis melo HOM05D006995 ORTHO05D167536 8.7e-08 60.5 45 62.2
BcaC04g20222 Brassica carinata HOM05D001146 ORTHO05D000973 1.5e-07 59.7 50 68.0
C09p46490 Brassica napus HOM05D001146 ORTHO05D000973 1.5e-07 59.7 50 68.0
C04p43920 Brassica napus HOM05D001146 ORTHO05D000973 1.9e-07 59.3 30 90.0
BolC4t25973H Brassica oleracea HOM05D001146 ORTHO05D000973 1.9e-07 59.3 30 90.0
BcaC09g51351 Brassica carinata HOM05D006995 ORTHO05D008870 2.5e-07 58.9 52 55.8
BolC7t43312H Brassica oleracea HOM05D001146 ORTHO05D000973 9.6e-07 57.0 30 86.7
DCAR_006239 Daucus carota HOM05D006995 ORTHO05D008870 1.6e-06 56.2 80 51.2


User provided reference genes

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