Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 6.2e-70 267.3 132 100.0
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 5.1e-64 247.7 132 90.9
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.1e-63 246.5 132 90.9
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 9.3e-58 226.9 129 86.0
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 2.1e-57 225.7 128 86.7
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 9.6e-55 216.9 124 87.1
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.9e-50 202.6 129 75.2
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 5.5e-50 201.1 127 78.7
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.7e-49 198.7 129 72.1
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 4.6e-49 198.0 128 75.0
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 4.6e-49 198.0 128 75.0
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 4.6e-49 198.0 128 75.0
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 6.0e-49 197.6 119 80.7
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 1.0e-48 196.8 128 75.0
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 1.8e-48 196.1 123 77.2
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 3.0e-48 195.3 128 73.4
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 1.1e-47 193.4 129 72.9
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 4.3e-47 191.4 130 72.3
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 4.8e-46 188.0 128 69.5
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 9.0e-45 183.7 120 71.7
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 9.0e-45 183.7 128 69.5
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 9.0e-45 183.7 120 71.7
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 9.0e-45 183.7 128 69.5
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 7.6e-44 180.6 120 70.8
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 3.8e-43 178.3 120 70.0
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 6.7e-40 167.5 131 61.8
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 6.7e-40 167.5 131 63.4
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 6.7e-40 167.5 131 63.4
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 6.7e-40 167.5 131 63.4
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 6.7e-40 167.5 132 64.4
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.5e-39 166.4 128 64.8
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 1.9e-39 166.0 129 65.9
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.6e-38 162.9 131 61.8
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 1.6e-38 162.9 128 61.7
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 1.6e-38 162.9 131 58.8
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 2.8e-38 162.2 131 61.8
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.8e-38 162.2 131 61.1
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 2.8e-38 162.2 128 60.9
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 3.7e-38 161.8 129 62.0
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 3.7e-38 161.8 128 59.4
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 4.8e-38 161.4 131 58.0
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 6.3e-38 161.0 132 59.8
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 6.3e-38 161.0 132 61.4
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 8.2e-38 160.6 131 58.0
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 8.2e-38 160.6 129 60.5
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 1.1e-37 160.2 125 60.8
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 1.8e-37 159.5 129 62.8
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 1.8e-37 159.5 123 61.8
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 2.4e-37 159.1 123 63.4
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 2.4e-37 159.1 129 62.8
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 3.1e-37 158.7 131 58.8
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 4.1e-37 158.3 131 58.0
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 5.3e-37 157.9 131 58.0
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 5.3e-37 157.9 123 62.6
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 5.3e-37 157.9 132 59.1
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 6.9e-37 157.5 124 62.9
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 6.9e-37 157.5 123 61.8
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 9.0e-37 157.1 123 59.3
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.2e-36 156.8 131 58.8
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 1.2e-36 156.8 131 58.0
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 1.2e-36 156.8 132 58.3
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 1.2e-36 156.8 124 63.7
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.5e-36 156.4 131 56.5
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 1.5e-36 156.4 129 59.7
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 1.5e-36 156.4 129 57.4
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 1.5e-36 156.4 123 59.3
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.0e-36 156.0 123 62.6
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 2.0e-36 156.0 131 59.5
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 2.6e-36 155.6 132 58.3
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 3.4e-36 155.2 119 60.5
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 3.4e-36 155.2 120 62.5
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 4.5e-36 154.8 127 60.6
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 4.5e-36 154.8 130 61.5
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 5.9e-36 154.5 119 63.0
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 7.6e-36 154.1 126 61.1
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 7.6e-36 154.1 122 61.5
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 7.6e-36 154.1 123 63.4
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 1.0e-35 153.7 122 59.8
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 1.0e-35 153.7 126 59.5
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.3e-35 153.3 131 55.0
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 1.3e-35 153.3 120 60.0
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 1.3e-35 153.3 123 61.8
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 1.3e-35 153.3 126 60.3
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 1.7e-35 152.9 122 59.8
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.2e-35 152.5 123 61.0
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 2.2e-35 152.5 123 61.0
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.2e-35 152.5 119 63.9
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 2.9e-35 152.1 123 59.3
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 3.8e-35 151.8 130 58.5
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 3.8e-35 151.8 121 63.6
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 3.8e-35 151.8 131 56.5
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 3.8e-35 151.8 126 57.1
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 3.8e-35 151.8 125 58.4
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 5.0e-35 151.4 125 57.6
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 5.0e-35 151.4 131 56.5
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 5.0e-35 151.4 129 58.1
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 5.0e-35 151.4 121 62.8
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 5.0e-35 151.4 131 56.5
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 6.5e-35 151.0 123 61.8
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 6.5e-35 151.0 128 57.8
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 6.5e-35 151.0 120 60.0
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 6.5e-35 151.0 131 55.0
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 8.5e-35 150.6 126 57.1
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 8.5e-35 150.6 123 57.7
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 1.1e-34 150.2 123 58.5
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 1.1e-34 150.2 130 59.2
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 1.1e-34 150.2 123 57.7
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 1.4e-34 149.8 128 57.0
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 1.4e-34 149.8 129 53.5
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 1.4e-34 149.8 124 56.5
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 1.9e-34 149.4 123 56.9
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 2.5e-34 149.1 129 57.4
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 3.2e-34 148.7 129 56.6
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 3.2e-34 148.7 126 59.5
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 4.2e-34 148.3 124 55.6
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 4.2e-34 148.3 129 55.8
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 7.2e-34 147.5 120 60.8
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 9.3e-34 147.1 126 57.1
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.2e-33 146.7 126 55.6
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 2.1e-33 146.0 123 57.7
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 7.9e-33 144.1 125 55.2
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 1.0e-32 143.7 120 58.3
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 1.3e-32 143.3 129 55.8
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 2.3e-32 142.5 121 55.4
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 3.0e-32 142.1 119 58.0
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 5.1e-32 141.4 120 55.8
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 6.7e-32 141.0 123 54.5
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 6.7e-32 141.0 120 57.5
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 8.7e-32 140.6 120 56.7
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 1.1e-31 140.2 123 52.8
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 1.9e-31 139.4 120 56.7
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 4.3e-31 138.3 123 55.3
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 5.7e-31 137.9 118 58.5
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 5.7e-31 137.9 143 51.0
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 7.4e-31 137.5 122 54.1
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 9.7e-31 137.1 126 52.4
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 3.7e-30 135.2 116 55.2
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 3.7e-30 135.2 120 53.3
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 4.8e-30 134.8 117 54.7
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 8.2e-30 134.0 113 56.6
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.8e-29 132.9 102 64.7
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 2.4e-29 132.5 119 52.9
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 6.9e-29 131.0 106 58.5
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 6.9e-29 131.0 120 54.2
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 1.5e-28 129.8 130 54.6
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 1.5e-28 129.8 120 53.3
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 2.6e-28 129.0 125 51.2
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 7.7e-28 127.5 118 53.4
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 4.2e-26 121.7 100 57.0
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 4.2e-26 121.7 117 49.6
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 5.5e-26 121.3 113 54.9
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 7.2e-26 120.9 129 47.3
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 9.4e-26 120.6 123 49.6
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 3.6e-25 118.6 122 50.0
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 4.7e-25 118.2 118 48.3
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 6.1e-25 117.9 109 54.1
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 3.0e-24 115.5 135 46.7
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 3.8e-19 98.6 80 58.8
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 7.2e-18 94.4 70 62.9
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 6.1e-17 91.3 65 61.5
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 2.2e-14 82.8 54 68.5
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 3.7e-14 82.0 62 56.5
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 4.8e-14 81.6 112 35.7
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 1.8e-13 79.7 57 61.4
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 9.1e-13 77.4 119 37.8
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.3e-11 73.6 54 63.0
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.3e-11 73.6 65 55.4
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 2.9e-11 72.4 62 54.8
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 3.8e-11 72.0 65 55.4
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.6e-09 66.6 82 48.8
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 6.1e-09 64.7 61 54.1
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 6.1e-09 64.7 61 54.1
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 2.6e-07 59.3 63 50.8
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 4.4e-07 58.5 65 49.2
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 9.7e-07 57.4 63 49.2


User provided reference genes

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